Cladistic Research Articles

Ceciamaralia, a new genus of Dorvilleidae (Annelida) from deep waters of the Southwest Atlantic Ocean and an insight into its relationship within the family.

Dorvilleidae Chamberlin, 1919 is a family of Annelida containing some of the smallest 'polychaetes' species, being poorly studied worldwide, and with little knowledge regarding its diversity and occurrence. Samples obtained in oceanographic campaigns performed in the Southwest Atlantic Ocean (Brazilian coast) revealed a high number of specimens of dorvilleids, adding to our knowledge of the family's biodiversity. A detailed morphological analysis of these organisms has revealed a new genus, Ceciamaralia gen. nov., with two new species. The new genus differs from other Dorvilleidae genera in (i) the robust and enlarged pharynx which are frequently everted, (ii) unique composition of maxillae, with an elongated pair of serrated basal plates and one pair of anterior free maxillary plates with a long and thin anterior spine and (iii) ventral cirri present only in few first chaetigers. Ceciamaralia lanai gen. et sp. nov. is characterized by the presence of a broad and large dorsal cirrus on a few anterior parapodia and by furcate chaeta in supra-acicular fascicles. While Ceciamaralia nonatoi gen. et sp. nov. presents one geniculate chaeta instead of one furcate, the absence of dorsal cirri and, in some specimens, the absence of palps. A cladistic analysis supported the monophyly of Ceciamaralia gen. nov. by four synapomorphies related to the unique morphology of its maxillae, pharynx and appendages. This study is part of several recent taxonomic studies aiming to elucidate and increase the knowledge of Dorvilleidae, since it is part of a Ph.D project focused on the family.

A lost tooth in the jungle: revisiting the sole dinosaurian record from northern Brazil.

The record of Mesozoic reptiles in the Northern region of Brazil is extremely limited, with the only definite occurrence consisting of two ziphodont teeth recovered from an oil well core in the municipality of Nova Olinda do Norte, Amazonas state, from strata of the Alter do Chão Formation (Cenomanian) of the Amazonas Basin. In this study, we aim to reevaluate MCT.R.514 using the most recent methodologies available for the identification of isolated theropod teeth. The cladistic analyses recovered MCT.R.514 as a possible metriacanthosaurid or non carcharodontosaurid allosauroid while the LDAs showed affinities between the specimen and Abelisauridae, Piatniktzysauridae, and Tyrannosauridae. MCT.R.514 was assigned as an abelisaurid due to its overall morphology that lacked metriacanthosaurid synapomorphies (i.e. spiraling mesial carina, strongly labially displaced distal carina, and well-marked mesiolingual longitudinal groove), while maintaining homoplastic features between both groups (i.e. irregular enamel texture, a lingually biconcave cross section, and a straight distal margin). This, together with a mostly Laurasian distribution of Metriacanthosauridae favors the assignment of MCT.R.514 as an abelisaurid as the most parsimonious hypothesis in this occasion. The identification of the specimen as an abelisaurid further expands the still scarce "Mid'' Cretaceous record of this clade in Brazil.

Molecular identification of new Trypanosoma evansi type non-A/B isolates from buffaloes and cattle in Indonesia.

Trypanosoma evansi is reportedly divided into two genotypes: types A and B. The type B is uncommon and reportedly limited to Africa: Kenya Sudan, and Ethiopia. In contrast, type A has been widely reported in Africa, South America, and Asia. However, Trypanosoma evansi type non-A/B has never been reported. Therefore, this study aims to determine the species and genotype of the Trypanozoon subgenus using a robust identification algorithm. Forty-three trypanosoma isolates from Indonesia were identified as Trypanosoma evansi using a molecular identification algorithm. Further identification showed that 39 isolates were type A and 4 isolates were possibly non-A/B types. The PML, AMN-SB1, and STENT3 isolates were likely non-A/B type Trypanosoma evansi isolated from buffalo, while the PDE isolates were isolated from cattle. Cladistic analysis revealed that Indonesian Trypanosoma evansi was divided into seven clusters based on the gRNA-kDNA minicircle gene. Clusters 6 and 7 are each divided into two sub-clusters. The areas with the highest genetic diversity are the provinces of Banten, Central Java (included Yogyakarta), and East Nusa Tenggara. The Central Java (including Yogyakarta) and East Nusa Tenggara provinces, each have four sub-clusters, while Banten has three.

Hemipenial morphology of whiptail lizards Glaucomastix abaetensis and Glaucomastix littoralis , with comments on the genus Ameivula (Teiidae: Teiinae).

Hemipenes are important structures for the systematics of Squamata, and may assist in the diagnosis of closely related taxa. Only one of the species of Glaucomastix (G. venetacauda) had its hemipenial morphology described in literature so far. Here we analyze and describe for the first time the hemipenes of seven specimens of G. abaetensis and 20 specimens of G. littoralis from the reptile collection of Museu Nacional, Universidade Federal do Rio de Janeiro. In both species the hemipenes are bilobed with a forked sulcus spermaticus in a centripetal orientation and present laminar ornamentations on the hemipenial body and paired awns on the apical region of the lobes. The two species differed from each other only in the modal number of proximal laminae. The main differences in hemipenial morphology between Glaucomastix and its sister genus Ameivula are the presence of laminae in the hemipenial body (absent in Ameivula) and the absence of digitiform papillae on the apical lobular region (present in Ameivula). We expect that our data can be used as an additional tool to diagnose species within the genus Glaucomastix/Ameivula.

Re-examination of the Southern Hemisphere truffle genus Amylascus (Pezizaceae, Ascomycota) and characterization of the sister genus Nothoamylascus gen. nov.

Amylascus is a genus of ectomycorrhizal truffles within Pezizaceae that is known from Australia and contains only two described species, A. herbertianus and A. tasmanicus. Species of Amylascus are closely related to truffles (Pachyphlodes, Luteoamylascus) and cup fungi (Plicariella) from the Northern Hemisphere. Here we reevaluate the species diversity of Amylascus and related taxa from southern South America and Australia based on new morphological and molecular data. We identify previously undocumented diversity and morphological variability in ascospore color, ascospore ornamentation, hymenial construction, epithecium structure and the amyloid reaction of the ascus in Melzer's reagent. We redescribe two Amylascus species from Australia and describe seven new Amylascus species, five from South America and two from Australia. This is the first report of Amylascus species from South America. We also describe the new South American genus Nothoamylascus as sister lineage to the Pachyphlodes-Amylascus-Luteoamylascus clade (including Amylascus, Luteoamylascus, Pachyphlodes, and Plicariella). We obtained ITS sequences of mitotic spore mats from Nothoamylascus erubescens gen. & sp. nov. and four of the seven newly described Amylascus species, providing the first evidence of mitotic spore mats in Amylascus. Additional ITS sequences from mitotic spore mats reveal the presence of nine additional undescribed Amylascus and one Nothoamylascus species that do not correspond to any sampled ascomata. We also identify three additional undescribed Amylascus species based on environmental sequences from the feces of two grounddwelling bird species from Chile, Scelorchilus rubecula and Pteroptochos tarnii. Our results indicate that ascomata from Amylascus and Nothoamylascus species are rarely collected, but molecular data from ectomycorrhizal roots and mitotic spore mats indicate that these species are probably common and widespread in southern South America. Finally, we present a time-calibrated phylogeny that is consistent with a late Gondwanan distribution. The time since the most recent common ancestor of: 1) the family Pezizaceae had a mean of 276 Ma (217-337 HPD); 2) the Amylascus-Pachyphlodes-Nothoamylascus-Luteoamylascus clade had a mean of 79 Ma (60-100 HPD); and 3) the Amylascus-Pachyphlodes clade had a mean of 50 Ma (38-62 HPD). The crown age of Pachyphlodes had a mean of 39 Ma (25-42 HPD) and Amylascus had a mean age of 28 Ma (20-37 HPD), falling near the Eocene-Oligocene boundary and the onset of the Antarctic glaciation (c. 35 Ma). Citation: Healy RA, Truong C, Castellano MA, et al. 2023. Re-examination of the Southern Hemisphere truffle genus Amylascus (Pezizaceae, Ascomycota) and characterization of the sister genus Nothoamylascus gen. nov. Persoonia 51: 125-151. doi: 10.3767/persoonia.2023.51.03.

Taxonomic revision and cladistic analysis of Lasiodora C. L. Koch, 1850 (Araneae, Theraphosidae) with notes on related genera.

The genus Lasiodora C. L. Koch, 1850 is revised and morphological cladistic analyses carried out including all of its species, as well as most of those of the related genera Vitalius Lucas, Silva & Bertani, 1993, Nhandu Lucas, 1983, Pterinopelma Pocock, 1901, Proshapalopus Mello-Leito, 1923, Eupalaestrus Pocock, 1901, Lasiocyano Galleti-Lima, Hamilton, Borges & Guadanucci, 2023, Parvicarina Galleti-Lima, Hamilton, Borges & Guadanucci, 2023, and Tekoapora Galleti-Lima, Hamilton, Borges & Guadanucci, 2023. A matrix with 50 terminal taxa, 2 continuous and 48 discrete characters was analyzed with TNT 1.5. The result shows a monophyletic Lasiodora as sister group of Nhandu, and Vitalius is the sister group of this clade. Lasiodora comprises 7 species: Lasiodora klugi (C. L. Koch, 1841) (type species), L. benedeni Bertkau, 1880, L. parahybana Mello-Leito, 1917, L. subcanens Mello-Leito, 1921, L. camurujipe n. sp., L. sertaneja n. sp., and L. franciscana n. sp. Lasiodora itabunae Mello-Leito, 1921 is considered a junior synonym of L. klugi. Lasiodora differens Chamberlin, 1917, L. curtior Chamberlin, 1917, L. mariannae Mello-Leito, 1921, L. difficilis Mello-Leito, 1921, L. erythrocythara Mello-Leito, 1921, and Acanthoscurria cristata Mello-Leito, 1923 are considered junior synonyms of L. benedeni. Lasiodora acanthognatha Mello-Leito, 1921 is considered junior synonym of L. parahybana. Lasiodora dulcicola Mello-Leito, 1921 is considered junior synonym of L. subcanens. Nhandu sylviae Sherwood, Gabriel & Brescovit, 2023 is considered junior synonym of Vitalius sorocabae Mello-Leito, 1923. The holotype of Crypsidromus isabellinus Ausserer, 1871 (type species of the genus) was reanalyzed and is considered the senior synonym of Proshapalopus anomalus Mello-Leito, 1923 (type species of the genus). Thus, the genus Crypsidromus Ausserer, 1871 is considered valid, removed from the synonymy with Lasiodora, and Proshapalopus is considered a junior synonym of Crypsidromus. The new combination C. multicuspidatus (Mello-Leito, 1929) n. comb. is established. Crypsidromus bolivianus Simon, 1892 is considered a junior synonym of Acanthoscurria insubtilis Simon, 1892. Five species from Costa Rica described in Crypsidromus are transferred back from Lasiodora: Crypsidromus brevibulbus Valerio, 1980 comb. rev., C. carinatus Valerio, 1980 comb. rev., C. icecu Valerio, 1980 comb. rev., C. puriscal Valerio, 1980 comb. rev., C. rubitarsus Valerio, 1980 comb. rev. Lasiodora lakoi Mello-Leito, 1943 is transferred to Megaphobema, making the new combination Megaphobema lakoi (Mello-Leito, 1943) n. comb. Lasiodora spinipes Ausserer, 1871 is transferred to Theraphosa, making the new combination Theraphosa spinipes (Ausserer, 1871) n. comb. Nhandu chromatus Schmidt, 2004 is transferred to Vitalius making the new combination Vitalius chromatus (Schmidt, 2004) n. comb. Lasiodora sternalis is transferred to Acanthoscurria making the new combination Acanthoscurria sternalis (Mello-Leito, 1923). Due to the homonymy with Acanthoscurria sternalis Pocock, 1903, the new name Acanthoscurria melloleitaoi nom. nov. is proposed. The following species are considered nomina dubia: Lasiodora saeva (Walckenaer, 1837), Lasiodora striatipes (Ausserer, 1871), Lasiodora moreni (Holmberg, 1876), Crypsidromus fallax Bertkau, 1880, Trechona pantherina Keyserling, 1891, Lasiodora bahiensis Strand, 1907, Lasiodora citharacantha Mello-Leito, 1921, Lasiodora cryptostigma Mello-Leito, 1921, Lasiodora dolichosterna Mello-Leito, 1921, Lasiodora fracta Mello-Leito, 1921, and Lasiodora pleoplectra Mello-Leito, 1921. A discussion on the relationship of Lasiodora, Nhandu, Vitalius, Pterinopelma and Crypsidromus as well maps with the distributions of all Lasiodora species are provided.

A plurality of morphological characters need not equate with phylogenetic accuracy: A rare genomic change refutes the placement of Solifugae and Pseudoscorpionesin Haplocnemata.

Recent advances in higher-level invertebrate phylogeny have leveraged shared features of genomic architecture to resolve contentious nodes across the tree of life. Yet, the interordinal relationships within Chelicerata have remained recalcitrant given competing topologies in recent molecular analyses. As such, relationships between topologically unstable orders remain supported primarily by morphological cladistic analyses. Solifugae, one such unstable chelicerate order, has long been thought to be the sister group of Pseudoscorpiones, forming the clade Haplocnemata, on the basis of eight putative morphological synapomorphies. The discovery, however, of a shared whole genome duplication placing Pseudoscorpiones in Arachnopulmonata provides the opportunity for a simple litmus test evaluating the validity of Haplocnemata. Here, we present the first developmental transcriptome of a solifuge (Titanopuga salinarum) and survey copy numbers of the homeobox genes for evidence of systemic duplication. We find that over 70% of the identified homeobox genes in T. salinarum are retained in a single copy, while representatives of the arachnopulmonates retain orthologs of those genes as two or more copies. Our results refute the placement of Solifugae in Haplocnemata. Subsequent reevaluation of putative interordinal morphological synapomorphies amongchelicerates reveals a high incidence of homoplasy, reversals, and inaccurate coding within Haplocnemata and other small clades, as well as Arachnida more broadly, suggesting existing morphological character matrices are insufficient to resolve chelicerate phylogeny.

A new species of Keteleeria (Pinaceae) from the Lower Cretaceous of Inner Mongolia, Northeast China, and its palaeogeographic and palaeoclimatic implications

Keteleeria Carrière (Pinaceae) is a small genus of evergreen conifer trees, with three to five extant species and six variants distributed across China, Laos, and Vietnam. A new species of conifer fossil wood, Keteleeria huolinhensis sp. nov., is described from the Lower Cretaceous Huolinhe Formation in Inner Mongolia, China. This species is characterized by a heterogeneous pith, endarch primary xylem, the presence of axial resin canals, abietinean radial tracheid pitting, mostly taxodioid and occasionally cupressoid cross-field pitting, nodular horizontal and end walls of ray parenchyma cells, and uniseriate rays of 1–15 (mainly 1–8) cell height. This newly discovered fossil wood represents the earliest record of Keteleeria wood, and sheds light on its evolutionary history and palaeogeographical distribution ranges in the geological past. Cladistic analysis based on 12 morphological characteristics supports the assignment of Protopiceoxylon as the ancestral group of Keteleerioxylon and Keteleeria, reflecting the evolution of radial tracheid pitting from the mixed to abietinean type. Quantitative analysis of the growth rings indicated that K. huolinhensis sp. nov. is an evergreen tree with a Leaf Retention Time (LRT) of 1–3 years. The growth ring patterns in the present fossil wood specimen suggest that the Huolinhe Basin experienced a temperate climate with regular seasonal fluctuations, and relatively sufficient water supply during the Early Cretaceous. Traumatic resin canals, wound scars, presumed fungal remains, and insect tracks in the stem contribute to a further understanding of the complex ecological relationships in the Early Cretaceous Huolinhe flora.

Studies of Asian ‘Calliandra' lead to expansion of Sanjappa (Fabaceae‐Caesalpinioideae)

The genus Sanjappa, previously with the single species S. cynometroides in southern India, is expanded to include S. umbrosa, comb. nov., in northeastern India, Bangladesh, Myanmar and China (Yunnan) and S. vietnamica, sp. nov., in southern Vietnam. Sanjappa differs from Thailentadopsis, its sister genus in the Zapoteca clade, by having leaves with extrafloral nectaries in the form of sessile (versus stipitate) glands and elastically dehiscent, not moniliform pods (versus pods not elastically dehiscent and submoniliform). Sanjappa umbrosa and S. vietnamica differ from S. cynometroides by having bipinnate leaves with one pair of pinnae (versus simply pinnate leaves with two leaflets only) and a four‐lobed (versus three‐lobed) corolla. In S. umbrosa each pinna is 2–3‐foliolate and paired stipular spines are mainly present on younger growth, whereas in S. vietnamica each pinna is (3–)4–5‐foliolate and branches, including major ones, are armed with numerous paired spines with thickened bases. Synonymies, images and notes on distribution, habitat, taxonomy and conservation for the three species of Sanjappa are provided, and all names are typified. With the taxonomic changes proposed here, all Asian species previously treated as members of Calliandra have been accommodated outside this genus.

Genome sequence and characterization of Streptomyces phages Vanseggelen and Verabelle, representing two new species within the genus Camvirus

Despite the rising interest in bacteriophages, little is known about their infection cycle and lifestyle in a multicellular host. Even in the model system Streptomyces, only a small number of phages have been sequenced and well characterized so far. Here, we report the complete characterization and genome sequences of Streptomyces phages Vanseggelen and Verabelle isolated using Streptomyces coelicolor as a host. A wide range of Streptomyces strains could be infected by both phages, but neither of the two phages was able to infect members of the closely related sister genus Kitasatospora. The phages Vanseggelen and Verabelle have a double-stranded DNA genome with lengths of 48,720 and 48,126 bp, respectively. Both phage genomes contain 72 putative genes, and the presence of an integrase encoding protein indicates a lysogenic lifestyle. Characterization of the phages revealed their stability over a wide range of temperatures (30–45 °C) and pH values (4–10). In conclusion, Streptomyces phage Vanseggelen and Streptomyces phage Verabelle are newly isolated phages that can be classified as new species in the genus Camvirus, within the subfamily Arquattrovirinae.

Echericetus novellus n. gen. n. sp. (Cetacea, Mysticeti, Eomysticetidae), an Oligocene baleen whale from Baja California Sur, Mexico

AbstractAmong the several evolutionary lineages of the baleen whales (Mysticeti), the eomysticetids are an ancient successful family that retain possibly nonfunctional teeth and functional baleen, a transitional stage between toothed and baleen-assisted filter-feeding mysticetes. The patchy fossil record leaves gaps in eomysticetid paleobiology interpretations, but their diversity and widespread geographical distribution can be a relevant proxy to understanding the evolution of crown Mysticeti. Here we describe a new baleen whale, Echericetus novellus n. gen. n. sp., from the Oligocene of Mexico (slightly older than 27.95 million years ago). This new taxon has morphological features that show its affinity to Eomysticetidae, such as the intertemporal region longer than wide, the elongate and oval temporal fossa, and a well-developed and lobate coronoid process of the mandible. Similarly, our cladistic analyses confirm the inclusion of Echericetus in the Eomysticetidae. Echericetus reinforces our notion of the eomysticetid diversity and disparity. Geographically, the existence of Echericetus from Mexico also indicates that eomysticetid inhabited subtropical regions in the Northern Hemisphere. Last, our discovery of a new eomysticetid from the Oligocene of Mexico provides new insights into the distribution patterns and habitat use of Eomysticetidae, essential to further explain the demise of this transitional lineage between toothed and baleen-bearing whales.UUID: http://zoobank.org/00cfc802-e2da-465c-9bb6-59347be00164

The cardiorespiratory system of miniature frogs.

Anurans of the genus Brachycephalus are among the smallest vertebrates in the world, due to an extreme process of miniaturization. As an example of this process, Brachycephalus species show loss of fingers, loss of the eardrum and middle ear, bone fusions, and the presence of paravertebral plates and parotic plaque. However, no studies addressing the consequences of miniaturization on internal organs, such as the lungs and heart, are currently available. Thus, this study aimed to investigate if overall small body size has affected the cardiorespiratory system. We investigated, via dissections, individuals of four Brachycephaloidea species: Brachycephalus rotenbergae, B. pitanga, Eleutherodactylus johnstonei, and Ischnocnema parva. We observed that B. rotenbergae and B. pitanga present a reduction of the atrial septum and absence of the carotid body. On the other hand, despite being a member of the sister genus to Brachycephalus (both genera belong to the Brachycephalidae), individuals of Ischnocnema present a heart with a complete septum and carotid body; this is also observed in E. johnstonei (Eleutherodactylidae). We observed that B. rotenbergae and B. pitanga have thin skin with a one to two cell thick germ layer, and their lungs likely exhibit lower blood supply when compared to individuals of the E. johnstonei and I. parva species. Based on the observed structures, we suggest that in species of Brachycephalus, respiration is performed mainly through the skin, and their lungs may have a reduced respiratory function.

Frankliniella species from India (Thysanoptera: Thripidae), with a new generic synonym and an unusual new species.

Frankliniella genus-group is one of the most important group in the sub-family Thripinae comprising, more than 270 species in nine genera. A morphological-based cladistic analysis of genus-level relationships within this group was performed, based on 54 morphological character states for 26 species, including Thrips physapus as an outgroup. This analysis recovered Pseudanaphothrips as monophyletic and sister-group to a group of five Old World genera: Firmothrips, Kakothrips, Parabaliothrips, Sitothrips and Yaobinthrips. It also showed a sister relationship between eight species of Poaceae-associated Old World species in Frankliniella plus Iridothrips, and a group of five New World species in Frankliniella and Guerothrips. As a result, Iridothrips is here considered a new synonym of Frankliniella, and Frankliniella insolitum sp. n. is described from northern India. A key to the six species of Frankliniella recorded from India is also provided. Images and notes of F. unicolor Morgan based on a paratype of the synonym F. andropogoni Moulton & Andre are also provided.

The spiraling story of Tyleropappus and a new name for Calea (Asteraceae: Neurolaeneae) from Venezuela

Tyleropappus was described in 1931 by Greenman and is characterized by its spiral, alternate leaves and epaleaceous receptacle. Throughout its taxonomic history, the genus was placed into the tribes Helenieae and Neurolaeneae, often treated as the sister genus of Geissopappus, which is currently a synonym of Calea. Later, Tyleropappus was synonymized with Calea; however, when its synonymization was proposed, the sole species in the genus, T. dichotomus, had not been synonymized under a previously described species nor properly transferred to Calea. Ongoing taxonomic studies in Neurolaeneae have provided opportunities to clarify the challenging taxonomic history of this monotypic genus. We confirm the synonymy of Tyleropappus in Calea; however, we recognize T. dichotomus as a distinct species that should be accepted in Calea. Nonetheless, the name C. dichotoma already exists, and is a synonym of C. ternifolia. Therefore, we propose the new name C. spiralis to accommodate this species, which is morphologically similar to C. linearifolia. The former can be distinguished from the latter by the spiral, alternate (vs. decussate) arrangement of leaves, receptacle epaleaceous (vs. oligopaleaceous) and cypselae hirsute (vs. glabrous). We also provide a detailed description of the species, the first map of its geographic occurrence, an illustration with diagnostic characters, and the first taxonomic key for the Nana clade of Calea.

De-novo whole genome assembly of the orange jewelweed, Impatiens capensis Meerb. (Balsaminaceae) using nanopore long-read sequencing.

The plant family Balsaminaceae comprises only two genera, and they are a study in contrasts. While Impatiens is an impressively prolific genus, with over 1,000 species and more being discovered each year, its sister genus, Hydrocera, has one solitary species, H. triflora. The two genera also differ in geographic distribution and habitat type (Impatiens species are widely distributed in much of the Old World and N. America, while H. triflora is confined to wetlands specific to S. India, Sri Lanka, and SE Asia). Other contrasting features include plant habit, habitat, floral architecture, mode of seed dispersal, and a host of other traits. The family Balsaminaceae is therefore an excellent model for studying speciation and character evolution as well as understanding the proximal and evolutionary forces that have driven the two genera to adopt such contrasting evolutionary paths. Various species of the Impatiens genus are also commercially important in the ornamental flower industry and as sources of phytochemicals that are of medicinal and other commercial value. As a preliminary step towards studying the genomic basis of the contrasting features of the two genera, we have sequenced and assembled, de novo, the genome of an iconic Impatiens species from N. America, namely I. capensis, and report our findings here.

Revision of the darkling beetle genusEurynotus(Blaptinae: Platynotini) and new records of ovovivipary in Tenebrionidae

AbstractThe taxonomic concepts and monophyly of the southern African genus Eurynotus and its subgeneric components (Biolus and Neosolenopistoma) are tested using cladistic analyses. Seventy morphological characters were scored and analysed using maximum parsimony and Bayesian inference for 26 Eurynotina species, including all Eurynotus. Comprehensive revision of Biolus and Eurynotus resulted in Neosolenopistoma becoming a junior synonym of the genus Biolus stat. nov. (elevated to generic rank), restoration of one species (B. asperipennis stat. res.), recognition of seven new combinations, and descriptions of two new species (Biolus brunoi sp. nov. and Eurynotus privisolum sp. nov.). Lectotypes are designated for previously described species from syntype material, and a key to species of Biolus and Eurynotus is provided. Three species were confirmed as ovoviviparous (two Biolus and one Eurynotus) bringing the number of recorded ovoviviparous Tenebrionidae to 14. Shortened ovipositors are discounted as requisite for ovovivipary based on elongate paraprocts in Biolus and Eurynotus. Principal component analyses were used to examine three lineages of ovoviviparous tenebrionids; however, no single set of climatic variables was correlated with ovovivipary. Southern African, Malagasy, and Guadeloupe lineages of ovoviviparous Tenebrionidae probably have additional and/or separate evolutionary origins and selection pressures to consider when examining this reproductive strategy.

Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a large-scale biogeographical context.

This study examines nineteen phreatobiological hand pump samples collected in 20092010 in three separate areas of salmon river basins in the southern part of Primorye, in the Far East of Russia. For the first time, faunal groundwater patterns were assessed for the rivers of Eastern Manchuria, the Ussury River Basin and the rivers of the south-western slope of Sikhote Alin. A total of 164 species (including 32 stygobionts) belonging to the phyla Annelida, Mollusca and Arthropoda are first records of groundwater animals, and two of the stygobionts are described below as new species for Science. Nipponasellus sudzukhensis spec. nov. and N. matsumotoi spec. nov. are described and illustrated, and their taxonomic affinities with congeners are discussed. The morphology of male pleopod 2 of the genus Nipponasellus is re-examined using scanning electron microscopy (SEM), which revealed fine details of the pleopodal structures. The two new continental species of Nipponasellus were characterised by a distinct cannula completely immersed in ctenoid cuticular scales and the absence of a labial spur. Informal macrogroups were proposed based on the structure of the appendix masculina and an analysis of family distribution. The results of cladistic analyses revealed relationships between the proposed groups, but phylogenetic relationships within the Caecidotea-Proasellus group remain challenging. Common diagnostic characters of Nipponasellus showed that the group occupies an independent position close to the Caecidotea-Proasellus group rather than the Asellus-pattern sensu Magniez. Revised diagnosis for the genus Nipponasellus is given, including the two new species and the five previously described ones. The species diversity of East Asian stygobiotic asellid isopods is briefly reviewed to infer a biogeographic distribution pattern that emphasises the strict endemicity of members of the genus Nipponasellus. The intracontinental separation between continental Far East Asia and the Japanese archipelago highlights the biogeographic importance of the land-bridge in the Oligocene and raises questions about hypotheses explaining the (disjunct) distribution in East Asia, together with the circumstances preceding an ancient colonisation of the region.

New and revised taxa of Neotropical Diplotaxini (Coleoptera: Melolonthidae): do they change the existing relationships? Revisiting systematics with morphological and molecular data

Abstract The relationships among the Neotropical Diplotaxini and homology of revised and new taxa are revisited with parsimony analyses based on morphological characters, and probabilistic analyses based on concatenated ITS2 and COI genes. Neotropical Diplotaxini is now composed of five monophyletic genera: Pacuvia, Pachrodema, Homalochilus, Liogenys, and Careocallus gen. nov.. Pseudodiplotaxis is here transferred to incertae sedis of Melolonthinae. Careocallus is the sister genus of Liogenys and is composed of Careocallus tehuelche sp. nov. and Careocallus densicollis sp. nov. Sister phylogenetic relationship between Homalochilus and the rest of genera except Pacuvia is revealed. Homalochilussensu nov. is comprised by Homalochilus punctatostriatus and Homalochilus nigripennis sp. nov. This genus recovered its monophyly by transferring Homalochilus niger to Liogenys, as Liogenys nigercomb. nov. and this name is also synonymized with L. morio. The type species of Homalochilus is emended to be H. punctatostriatus. A neotype (Liogenys morio) and lectotypes (H. punctatostriatus, H. niger) are designated. Dichotomious key to Neotropical Diplotaxini genera and to species of Homalochilus and Careocallus are presented. Sequences and phylogenetic signals for Neotropical melolonthines are reported for the first time.

Üçüncü Basamak Üniversite Hastanesinde Takip Edilen Altı SARS-CoV-2 Pozitif Hastanın Tüm Genom Dizi Analizi

Aims: In this study, we aimed to determine mutations in the gene sequence of this virus, by performing whole genome sequence analysis from patient samples found positive by actual RT-PCR (PCR) for SARS-CoV-2.
 Methods: The study included six adult patient samples with different clinical manifestations with positive PCR tests for SARS-CoV-2, between June 01, 2020, and March 12, 2021. Sequence knowledge of all samples/testers has been loaded into the GISEAD (Global Initiative on Sharing All Influenza Data) data system. Clade Analysis, Genome Analysis, Variant Analysis, and Phylogenetic Tree Analysis were conducted.
 Results: 3 of the patients were women (female), and three were men(male), with the mean age of 42.5 years old (between 20 - 61). Totally 71 mutations were specified in 6 adult patients. By the Pangolin lineage, three of the patients were B.1.177, two were B.1, one was of B1.36 lineage. By the Pango lineage, two of the patients were B.1.609, one was B.177, one was B.1.36. By the Nexstrain Clade, four of the patients were 20A and two were of 19A lineage. No D614G mutation was detected in any of the patients. While five patients recovered, one patient with metastatic lung adenocarcinoma died.
 Conclusion; The patients were detected in the commonly found 'Non-VOC' group. Therefore, variants could not be associated with the clinical status and prognosis of the patients. However, it is thought that the data obtained contribute to both global and national SARS-CoV-2 data.

Description of two new genera and five new species of clade K92 from Bahia and Esprito Santo, southeastern Brazil (Arachnida, Opiliones, Gonyleptidae).

The systematics of gonyleptid harvestmen has recently been undergoing critical changes, especially regarding the Pachylinae and the K92 clade. In a recent cladistic analysis of the latter, the authors refrained from describing some of the detected new species to minimize the bulk of the alpha taxonomy in the manuscript. Herein, as a supplement and following the results of that analysis and the dismantlement of the genus Metagonyleptes Roewer, 1913, the formalization of two genera and five species belonging to clade K92 is proposed. Cajango gen. nov. is described in Caelopyginae based on three new species from southern Bahia State. Titanoleptes gen. nov. is proposed in Sodreaninae to include Metagonyleptes calcar Roewer, 1913, Metagonyleptoides cupidensis Soares & Soares, 1946, and two new species from Esprito Santo State.