Cladistic Research Articles

Rethinking asexuality: the enigmatic case of functional sexual genes in Lepraria (Stereocaulaceae)

BackgroundThe ubiquity of sex across eukaryotes, given its high costs, strongly suggests it is evolutionarily advantageous. Asexual lineages can avoid, for example, the risks and energetic costs of recombination, but suffer short-term reductions in adaptive potential and long-term damage to genome integrity. Despite these costs, lichenized fungi have frequently evolved asexual reproduction, likely because it allows the retention of symbiotic algae across generations. The lichenized fungal genus Lepraria is thought to be exclusively asexual, while its sister genus Stereocaulon completes a sexual reproductive cycle. A comparison of sister sexual and asexual clades should shed light on the evolution of asexuality in lichens in general, as well as the apparent long-term maintenance of asexuality in Lepraria, specifically.ResultsIn this study, we assembled and annotated representative long-read genomes from the putatively asexual Lepraria genus and its sexual sister genus Stereocaulon, and added short-read assemblies from an additional 22 individuals across both genera. Comparative genomic analyses revealed that both genera were heterothallic, with intact mating-type loci of both idiomorphs present across each genus. Additionally, we identified and assessed 29 genes involved in meiosis and mitosis and 45 genes that contribute to formation of fungal sexual reproductive structures (ascomata). All genes were present and appeared functional in nearly all Lepraria, and we failed to identify a general pattern of relaxation of selection on these genes across the Lepraria lineage. Together, these results suggest that Lepraria may be capable of sexual reproduction, including mate recognition, meiosis, and production of ascomata.ConclusionsDespite apparent maintenance of machinery essential for fungal sex, over 200 years of careful observations by lichenologists have produced no evidence of canonical sexual reproduction in Lepraria. We suggest that Lepraria may have instead evolved a form of parasexual reproduction, perhaps by repurposing MAT and meiosis-specific genes. This may, in turn, allow these lichenized fungi to avoid long-term consequences of asexuality, while maintaining the benefit of an unbroken bond with their algal symbionts.

Hidden in the plains: Two new extra‐andean species of Euathlus (Mygalomorphae, Theraphosidae) from Argentina with comments on their sexual behaviour

AbstractTwo new species of Euathlus (Verhandlungen der Kaiserlich‐Königlichen Zoologisch‐Botanischen Gesellschaft in Wien, 1875, 25, 125) from Argentina are described. Euathlus ameghinoi sp. n. and Euathlus ventus sp. n. are the first records for the Patagonian Steppe. Here we used mitochondrial DNA (cox1) to perform the first molecular phylogeny of some representatives of the genus. In addition, we present the first description of the sexual behaviour of the genus. Both molecular and cladistic morphological analysis showed the genus Euathlus as monophyletic, and new species were recovered as sister groups. New species show new morphological variations of typical characters for the genus (e.g. tibial apophyses and palpal organs).

Dasysiphonia adriatica sp. nov. (Delesseriaceae, Rhodophyta), a new red algal species from the North Adriatic Sea (Mediterranean Sea)

Dasysiphonia is a genus of the family Delesseriaceae (Rhodophyta) including 9 taxonomically accepted species, among which only the non-indigenous Dasysiphonia japonica has been documented from the Adriatic Sea (Mediterranean). This invasive species is native to Hokkaido Island (Japan) and was introduced to Europe and the Mediterranean Sea through imports of the commercial Pacific oyster Magallana gigas. In this study, we describe a new species belonging to the genus Dasysiphonia, collected in the Mediterranean Sea. This new taxon was sampled in Slovenian coastal waters; its thalli were analysed using both molecular and morphological approaches and it was compared with the other known species. Moreover, samples of the invasive D. japonica were collected from different Venice Lagoon (Italy) sites and used for comparison with the new taxon. The phylogenetic reconstruction, based on the plastid rbcL gene, clearly distinguished the new Slovenian entity from all the known Dasysiphonia species, including the ones recently transferred from the sister genus Dasya. These results indicate that the Slovenian samples represent a new species, hereby named Dasysiphonia adriatica sp. nov.

Molar enamel–dentine junction shape of Pliobates cataloniae and other Iberian pliopithecoids

The phylogenetic relationships of the small-bodied catarrhine Pliobates cataloniae (∼11.6 Ma, NE Iberian Peninsula) have been controversial since its original description. However, the recent report of additional dentognathic remains has supported its crouzeliid pliopithecoid status. Based on the available hypodigm, the molar enamel–dentine junction (EDJ) shape of P. cataloniae is compared with that of other pliopithecoids from the same basin as well as both extinct and extant hominoids to further evaluate its pliopithecoid affinities. We also quantitatively compare the EDJ shape among these taxa by means of landmark-based three-dimensional geometric morphometrics using principal component analysis (PCA), canonical variate analysis, and between-group PCA. Permutation tests are performed to test whether Pliobates variation exceeds that of extant hominoid genera. Results indicate that Pliobates is similar in molar EDJ shape to other pliopithecoids, particularly crouzeliids. The variation displayed by Pliobates upper molars is less marked at the EDJ level than at the outer enamel surface, probably owing to differential enamel wear and intraspecific differences in enamel thickness. Multivariate analyses of EDJ shape show that all pliopithecoids (including Pliobates) cluster together in the PCAs, canonical variate analyses, and between-group PCAs and occupy a different portion of the morphospaces from extinct and extant hominoids. Posterior and typicality probabilities strongly support the classification of Pliobates as a pliopithecoid, wheras permutation tests fail to reject the single-genus hypothesis for the P. cataloniae hypodigm. We conclude that P. cataloniae is a crouzeliid pliopithecoid, as recently supported by cladistic analyses of craniodental characters, and that previous cladistic results that supported a stem hominoid status are attributable to postcranial convergences with crown hominoids. Our results further highlight the potential of three-dimensional geometric morphometrics analyses of the EDJ shape for better informing fossil primate alpha-taxonomy by means of quantitatively testing hypotheses about tooth shape variation.

The Paussus (Scaphipaussus) lanxangensis species group of Indomalayan ant nest beetles (Coleoptera, Carabidae, Paussinae, Paussini) with description of a new species

The new species Paussus agatae sp. nov. could not easily be allocated to an established subgenus or even species group. The informal Paussus lanxangensis species group is established to include the new species and other related species. Its diagnostic characters are described and screened for possible use in cladistic analyses in the future. Currently, it consists of five described species of the Indomalayan mainland, which are arranged in a key.

Prasiolopsis wulf-kochii (Prasiolales, Trebouxiophyceae), a New Species Occurring in Hairs of the Sloth Bradypus tridactylus.

The monotypic genus Prasiolopsis has been known for a long time, but is often overlooked because of difficulties in identification and the morphological variability between uniseriate filaments and cell packages forming pseudoparenchymatic thalli depending on age. We investigated a strain (SAG 84.81) originally denoted as Trichophilus welckeri, which was isolated from the hairs of the sloth Bradypus tridactylus, and compared it with other available strains of Prasiolopsis and of the sister genus Pseudomarvania. Our investigations clearly showed that this strain differed in morphology, especially of the chloroplast, from those originally described for Trichophilus. Phylogenetic analyses of the SSU and ITS rDNA sequences revealed that the strain SAG 84.81 is sister to several strains of P. ramosa within the Prasiola clade (Trebouxiophyceae). Using the ITS-2/CBC approach, we clearly demonstrated that this strain represented a new species of Prasiolopsis, which we proposed here as P. wulf-kochii. In addition, we evaluated the ITS-2/CBC approach by comparing it with the two species of Pseudomarvania. All investigated strains showed CBCs and HCBCs, which support their species delimitation. The sequencing data of Trichophilus welckeri available in GenBank were phylogenetically re-evaluated by including all representatives of the Ulotrichales (Ulvophyceae). Our analyses showed that these sequences formed their own lineage within this order.

BIOGEOGRAPHIC PATTERNS OF COLOMBIAN FROGS AND TOADS

Using the data provided in Ruiz-Carranza et al. (1996) the distributions of the 540 species of frogs and toads are partitioned among ten ecogeographic units of Colombia defined on the basis of precipitation and elevation. Sorne lowlands areas (Pacific lowlands, Amazonia) exhibit high diversity (85-94 species) but lowlands areas in general are impoverished (30-52 species), especially when contrasted with upland areas. The three Andean cordilleras harbor between 87 and 121 species of frogs and toads, demonstrating that the biodiversity of Colombia resides primarily in its montane components, not in its lowland rainforests. When biological endemicity is separated from political endemicity, five areas of high endemicity remain (the three Andean cordilleras, the Sierra Nevada de Santa Marta, and the Pacific lowlands). We endeavor to explain this description by recourse to cladistic analyses of several groups of leptodactylid frogs where we find that the general pattem of diversification is by meaos of horizontal diversification (allopatric speciation) with a minor contribution from vertical diversification.

Phylogenetic systematics of Vigna sensu stricto in the context of Physostigma and allies.

Vigna includes economically vital crops and wild species. Molecular systematic studies of Vigna species resulted in generic segregates of many New World (NW) species. However, limited Old World (OW) sampling left questions regarding inter- and intraspecific relationships in Vigna s.s. African species, including the putative sister genus Physostigma, were comprehensively sampled within the context of NW relatives. Maximum likelihood and Bayesian inference analyses of the chloroplast matK-trnK and nuclear ribosomal ITS/5.8 S (ITS) DNA regions were undertaken to resolve OW Vigna taxonomic questions. Divergence dates were estimated using BEAST to date key nodes in the phylogeny. Analyses of matK and ITS data supported five clades of Vigna s.s.: subg. Lasiospron, a reduced subg. Vigna, subg. Haydonia, subg. Ceratotropis, an enlarged subg. Plectrotropis, and a clade including V. kirkii and V. stenophylla. Genome size estimates of 601 Mb for V. kirkii are near the overall mean of the genus, whereas V. stenophylla had a larger genome (810 Mb), similar to some Vigna subg. Ceratotropis or Plectrotropis species. Former subg. Vigna is reduced to yellow- and blue-flowered species and subg. Plectrotropis is enlarged to mostly all white-, pink-, and purple-flowered species. The age of the split between NW and OW Vigna lineages is ~6-7 Myr. Genome size estimates cannot rule out a polyploid or hybrid origin for V. stenophylla, potentially involving extinct lineage ancestors of Vigna subg. Ceratotropis or Plectrotropis, as indicated by network and phylogenetic analyses. Taxonomic revisions are suggested based on these results.

A PHYLOGENETIC ANALYSIS OF THE SUBFAMILY ARISTOLOCHIOIDEAE (ARISTOLOCHIACEAE)

A cladistic analysis of the subfamily Aristolochioideae (Aristolochiaceae) based on morphological characters is presented. The analysis includes 65 taxa within the ingroup, which represent all the tribes, subtribes, genera, and infrageneric taxa formally described within the subfamily Aristolochioideae sensu Schmidt. The analysis shows that Aristolochia s.l. is paraphyletic and that Euglypha and Holostylis are not different lineages from Aristolochia. Two of the three subgenera recognized within Aristolochia (Siphisia and Pararistolochia) are shown to be monophyletic. The third subgenus (Aristolochia) is paraphyletic. Most taxa at lower rank levels (sections, subsections, series, and subseries) are shown to be either polyphyletic or paraphyletic. The characters traditionally used for the recognition of these taxa are evaluated and new characters are introduced. Finally, a revised system of classification of the Aristolochioideae based on monophyletic groupings and consisting of two tribes, two subtribes, and five genera is proposed here.

Elucidating the biotechnological potential of the genera Parageobacillus and Saccharococcus through comparative genomic and pan-genome analysis

BackgroundThe genus Geobacillus and its associated taxa have been the focal point of numerous thermophilic biotechnological investigations, both at the whole cell and enzyme level. By contrast, comparatively little research has been done on its recently delineated sister genus, Parageobacillus. Here we performed pan-genomic analyses on a subset of publicly available Parageobacillus and Saccharococcus genomes to elucidate their biotechnological potential.ResultsPhylogenomic analysis delineated the compared taxa into two distinct genera, Parageobacillus and Saccharococcus, with P. caldoxylosilyticus isolates clustering with S. thermophilus in the latter genus. Both genera present open pan-genomes, with the species P. toebii being characterized with the highest novel gene accrual. Diversification of the two genera is driven through the variable presence of plasmids, bacteriophages and transposable elements. Both genera present a range of potentially biotechnologically relevant features, including a source of novel antimicrobials, thermostable enzymes including DNA-active enzymes, carbohydrate active enzymes, proteases, lipases and carboxylesterases. Furthermore, they present a number of metabolic pathways pertinent to degradation of complex hydrocarbons and xenobiotics and for green energy production.ConclusionsComparative genomic analyses of Parageobacillus and Saccharococcus suggest that taxa in both of these genera can serve as a rich source of biotechnologically and industrially relevant secondary metabolites, thermostable enzymes and metabolic pathways that warrant further investigation.

Further Brazilian “pachylines” absorbed into the DRMN clade: The genus Gyndoides Mello-Leitão, 1927 revisited (Opiliones, Gonyleptidae)

The ongoing depletion of the diversity of Pachylinae, the largest subfamily within Gonyleptidae, is progressing. The unranked clade DRMN continues to expand, now incorporating two additional genera – Gyndoides Mello-Leitão, 1927, and Sertaneja Saraiva, Hara & DaSilva, 2021 – previously classified under Pachylinae. Through a cladistic analysis, with an expansion of the morphological dataset used in previous works, our research reveals that both Gyndoides and Sertaneja are separately placed within DRMN. As DRMN is not a formal Linnean taxon, both genera are herein called Gonyleptidae incertae sedis to avoid the establishment of new monogeneric subfamilies. A new species of Gyndoides is described from the state of Paraná, marking the first record for the genus from this state. The other two species, from Santa Catarina state, are herein redescribed, and an emended diagnosis is provided for the genus.

A new lepisosteiform neopterygian (Actinopterygii) from the lower Toarcian Grimmen Formation (Lower Jurassic) of Mecklenburg and Western Pomerania, Germany

AbstractThe Lower Jurassic (lower Toarcian) Grimmen Formation (formerly known as "Green Series") of Mecklenburg and Western Pomerania (Northeast Germany) yielded two articulated anterior skeletons of fossil fish, which represent a new lepisosteiform genus and species: Mengius acutidens gen. et sp. nov. The new taxon is described. Osteology of the species is most similar to the contemporaneous species of Lepidotes Agassiz. It differs from Lepidotes in having a non-tritoral dentition and a differently shaped operculum. A cladistic analysis shows Mengius acutidens gen. et sp. nov. to be the sister taxon of Lepidotes, accordingly, the new species is assigned to the family Lepidotidae Agassiz. The occurrence of M. acutidens emphasises the endemic character of the lower Toarcian Grimmen Formation fish fauna of Northeast Germany.

Comparative Analysis and Phylogeny of the Complete Chloroplast Genomes of Nine Cynanchum (Apocynaceae) Species.

Cynanchum belongs to the Apocynaceae family and is a morphologically diverse genus that includes around 200 shrub or perennial herb species. Despite the utilization of CPGs, few molecular phylogenetic studies have endeavored to elucidate infrafamilial relationships within Cynanchum through extensive taxon sampling. In this research, we constructed a phylogeny and estimated divergence time based on the chloroplast genomes (CPGs) of nine Cynanchum species. We sequenced and annotated nine chloroplast (CP) genomes in this study. The comparative analysis of these genomes from these Cynanchum species revealed a typical quadripartite structure, with a total sequence length ranging from 158,283 to 161,241 base pairs (bp). The CP genome (CPG) was highly conserved and moderately differentiated. Through annotation, we identified a total of 129-132 genes. Analysis of the boundaries of inverted repeat (IR) regions showed consistent positioning: the rps19 gene was located in the IRb region, varying from 46 to 50 bp. IRb/SSC junctions were located between the trnN and ndhF genes. We did not detect major expansions or contractions in the IR region or rearrangements or insertions in the CPGs of the nine Cynanchum species. The results of SSR analysis revealed a variation in the number of SSRs, ranging from 112 to 150. In five types of SSRs, the largest number was mononucleotide repeats, and the smallest number was hexanucleotide repeats. The number of long repeats in the cp genomes of nine Cynanchum species was from 35 to 80. In nine species of Cynanchum, the GC3s values ranged from 26.80% to 27.00%, indicating a strong bias towards A/U-ending codons. Comparative analyses revealed four hotspot regions in the CPG, ndhA-ndhH, trnI-GAU-rrn16, psbI-trnS-GCU, and rps7-ndhB, which could potentially serve as molecular markers. In addition, phylogenetic tree construction based on the CPG indicated that the nine Cynanchum species formed a monophyletic group. Molecular dating suggested that Cynanchum diverged from its sister genus approximately 18.87 million years ago (Mya) and species diversification within the Cynanchum species primarily occurred during the recent Miocene epoch. The divergence time estimation presented in this study will facilitate future research on Cynanchum, aid in species differentiation, and facilitate diverse investigations into this economically and ecologically important genus.

A morphology-based phylogeny of the diatoms formerly assigned to the Orthoseiraceae (Bacillariophyta): phylogenetic relationships, character analysis and classification

ABSTRACT A formal cladistic analysis of the morphological features of taxa assigned to the Orthoseiraceae, including Phycavernosa, Guarreraea and species of the genus Orthoseira is developed for 35 taxa based on 16 characters along with two Melosira species and four biddulphioid species as ingroup taxa as well as Leptocylindrus danicus as the outgroup. A consensus tree of 266 843 most parsimonious topologies suggests that the Orthoseiraceae is monophyletic, and that Guarreraea plus all former species of Orthoseira represent a monophyletic group. This analysis of morphological data did not provide support for the members of the Orthoseiraceae being more closely related to melosiroid or biddulphioid diatoms. Relationships within the monophyletic orthoseiracean group are detailed. Due to the exclusion of the generitype of Orthoseira not possessing carinoportulae which are central tube processes, one of the diagnostic features of the former Orthoseiraceae, other taxon names are described and recognized herein. We recognize and describe a new order, the Liparogyrales, based on the genus Liparogyra for taxa that were previously assigned to Orthoseira. Two families, the Phycavernosaceae, comprising the genus Phycavernosa, and the Liparogyraceae, comprising Guarreraea and taxa formerly assigned to Orthoseira, are described. The genus Liparogyra is composed of three subgenera: the subgenus Liparogyra, the subgenus Porocyclia, and the subgenus Insularis which are diagnosed by synapomorphic features. Based on our analysis, the genus Stephanosira appears to lack synapomorphies. Liparogyra, Porocyclia and Stephanosira had previously been described as genera by Ehrenberg. Guarreraea and one newly proposed genus are also included in the Liparogyraceae. Several other lineages are aphyletic, due to them either being monotypic or without diagnostic features. Thus, a total of 29 species in five genera are recognized within the newly described order and two newly described families. Eighteen new combinations are proposed for the transfer of taxa from Orthoseira to other genera. Homoplasy amongst some of the character states is discussed.

A new Trachyaspis-like pan-cheloniid turtle from the Bartonian of Kazakhstan

The article describes a fossil pan-cheloniid Protrachyaspis shorymensis gen. et sp. nov. from the Karakeshi, Kert, Kuyulus, and Monata localities of the Shorym Formation (Bartonian, middle Eocene), as well as unknown localities of the Mangyshlak Peninsula, Kazakhstan. In addition, the shell bones of small pan-cheloniids from the Kuyulus and Tuzbair localities of the Shorym Formation with some traits of P. shorymensis are described, which probably represent remains of juvenile specimens of this species. The new taxon is characterized by a number of features rarely found in pan-cheloniids, including serrated dentaries, distally displaced lateral process of the humerus, and deeply sculptured external carapace surface. These features indicate a likely herbivorous diet and pelagic lifestyle of the new pan-cheloniid. According to the results of the cladistic analysis, P. shorymensis is sister to the Neogene species Trachyaspis lardyi Meyer, 1843, from which it differs in the absence of ridges on the carapace in adult individuals, the configuration of the scutes on the parietal bone, and the structure of the plastron. The stratigraphic gap between the appearance of P. shorymensis and its sister T. lardyi suggests a long ghost lineage of members of this clade throughout the Bartonian – Aquitanian (ca. 20.7 million years) preceding the appearance of T. lardyi. In most trees, the P. shorymensis + T. lardyi clade is located within the Chelonini clade, which, taking into account the middle Eocene age of P. shorymensis, indicates the early divergence of crown cheloniids, previously established based on molecular data. The new taxon is similar to the fragmentary remains of pan-cheloniids with a sculptured external surface of the shell, previously described from four localities of the upper part of the Buchak and lower part of Kiev formations in the south of European Russia and Ukraine, which makes it possible to determine these materials as cf. Protrachyaspis sp., and probably extends the appearance of the P. shorymensis + T. lardyi clade back to the middle Lutetian.

NEW INSIGHTS ON THE ENIGMATIC OTTERS FROM THE LATE MIOCENE OF TUSCANY: <em>TYRRHENOLUTRA MAREMMANA</em> NOV. COMB. (LUTRINAE, MUSTELIDAE, CARNIVORA), WITH A PHYLOGENY OF BUNODONT OTTERS

Otters, subfamily Lutrinae (Mustelidae), are predators that thrive in aquatic environments, and have a semiaquatic to fully aquatic lifestyle. While modern otters are found across the globe, their fossil history is limited, primarily documented by fragmented dentognathic remains. In this work, we report on and describe new dental remains of a medium-sized Lutrinae from the Late Miocene of Baccinello and Casteani (Tuscany), improving the poor fossil record of the subfamily in Europe. Tyrrhenolutra helbingi Hürzeler, 1987 is a poorly known species, described on some dental remains from the Baccinello mines and a few other localities. Considering its peculiar morphology, it has often been overlooked in the scientific literature. Description of the material stored at the Naturhistorisches Museum, Basel and Museo di Geologia e Paleontologia dell’Università di Firenze offers new insights on the intraspecific variability and dental morphology of this taxon. The comparative study of these findings highlights several morphological and biometrical similarities between T. helbingi and Paludolutra maremmana Hürzeler, 1987, which allow us to redefine these taxa as Tyrrhenolutra maremmana nov. comb. We carried out a total-evidence cladistic analysis seeking support for morphometric and morphological similarities between T. “helbingi” and “P.” maremmana. The resulting parsimony analyses support the synonymy, excluding a close relationship of T. maremmana with Paludolutra of Italy and Spain, as previously thought. Furthermore, we confirm a long-forgotten hypothesis identifying Limnonyx Crusafont Pairó, 1950 as the possible continental ancestor of Tyrrhenolutra.

Phylogenetic analysis and divergence time estimation of Lycium species in China based on the chloroplast genomes

BackgroundLycium is an economically and ecologically important genus of shrubs, consisting of approximately 70 species distributed worldwide, 15 of which are located in China. Despite the economic and ecological importance of Lycium, its phylogeny, interspecific relationships, and evolutionary history remain relatively unknown. In this study, we constructed a phylogeny and estimated divergence time based on the chloroplast genomes (CPGs) of 15 species, including subspecies, of the genus Lycium from China.ResultsWe sequenced and annotated 15 CPGs in this study. Comparative analysis of these genomes from these Lycium species revealed a typical quadripartite structure, with a total sequence length ranging from 154,890 to 155,677 base pairs (bp). The CPGs was highly conserved and moderately differentiated. Through annotation, we identified a total of 128–132 genes. Analysis of the boundaries of inverted repeat (IR) regions showed consistent positioning: the junctions of the IRb/LSC region were located in rps19 in all Lycium species, IRb/SSC between the ycf1 and ndhF genes, and SSC/IRa within the ycf1 gene. Sequence variation in the SSC region exceeded that in the IR region. We did not detect major expansions or contractions in the IR region or rearrangements or insertions in the CPGs of the 15 Lycium species. Comparative analyses revealed five hotspot regions in the CPG: trnR(UCU), atpF-atpH, ycf3-trnS(GGA), trnS(GGA), and trnL-UAG, which could potentially serve as molecular markers. In addition, phylogenetic tree construction based on the CPG indicated that the 15 Lycium species formed a monophyletic group and were divided into two typical subbranches and three minor branches. Molecular dating suggested that Lycium diverged from its sister genus approximately 17.7 million years ago (Mya) and species diversification within the Lycium species of China primarily occurred during the recent Pliocene epoch.ConclusionThe divergence time estimation presented in this study will facilitate future research on Lycium, aid in species differentiation, and facilitate diverse investigations into this economically and ecologically important genus.

Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis.

In exploring the evolutionary trajectories of both pathogenesis and karyotype dynamics in fungi, we conducted a large-scale comparative genomic analysis spanning the Cryptococcus genus, encompassing both global human fungal pathogens and nonpathogenic species, and related species from the sister genus Kwoniella. Chromosome-level genome assemblies were generated for multiple species, covering virtually all known diversity within these genera. Although Cryptococcus and Kwoniella have comparable genome sizes (about 19.2 and 22.9 Mb) and similar gene content, hinting at preadaptive pathogenic potential, our analysis found evidence of gene gain (via horizontal gene transfer) and gene loss in pathogenic Cryptococcus species, which might represent evolutionary signatures of pathogenic development. Genome analysis also revealed a significant variation in chromosome number and structure between the 2 genera. By combining synteny analysis and experimental centromere validation, we found that most Cryptococcus species have 14 chromosomes, whereas most Kwoniella species have fewer (11, 8, 5, or even as few as 3). Reduced chromosome number in Kwoniella is associated with formation of giant chromosomes (up to 18 Mb) through repeated chromosome fusion events, each marked by a pericentric inversion and centromere loss. While similar chromosome inversion-fusion patterns were observed in all Kwoniella species with fewer than 14 chromosomes, no such pattern was detected in Cryptococcus. Instead, Cryptococcus species with less than 14 chromosomes showed reductions primarily through rearrangements associated with the loss of repeat-rich centromeres. Additionally, Cryptococcus genomes exhibited frequent interchromosomal translocations, including intercentromeric recombination facilitated by transposons shared between centromeres. Overall, our findings advance our understanding of genetic changes possibly associated with pathogenicity in Cryptococcus and provide a foundation to elucidate mechanisms of centromere loss and chromosome fusion driving distinct karyotypes in closely related fungal species, including prominent global human pathogens.

The mitochondrial genome of Homoneura picta (Diptera: Lauxaniidae) and its phylogenetic analysis

Homoneura picta belongs to the Homoneurinae subfamily of Lauxaniidae, and it is widely distributed and common in China. This study reports the newly sequenced mitochondrial genome of H. picta. The sequence is 15,469 bp long and contains 37 genes (13 protein-coding, 22 tRNA, and 2 rRNA genes) and a control region. The overall base composition is 38.4% for A, 37.7% for T, 14.1% for C, and 9.8% for G, with a bias toward A + T (76.1%). Phylogenetic analysis show that Homoneura is a sister genus of Cestrotus. We have successfully sequenced the mitochondrial genome of H. picta, which can be useful in investigating the phylogenetic status of Homoneurinae. Our results provide data for further studies of phylogeny in Diptera.

Thought to Be Extinct, but Still Alive Today: The Miocene Genus Primascena Klimaszewsi, 1997 (Hemiptera: Psyllidae) in the Light of Two Extant Species from Brazil.

Fossils can document the morphological diversification through time and date lineages, providing relevant characters are preserved. Primascena Klimaszewsi, 1997 was erected for P. subita Klimaszewsi, 1997 on the basis of a single, partly damaged male from Dominican amber. Originally assigned to Rhinocolidae: Paurocephalinae, the genus was subsequently transferred to Psyllidae: Aphalaroidinae. Recently, two undescribed species resembling the fossil species were discovered in Brazil (Mato Grosso do Sul), allowing a detailed morphological study of adults and immatures. Based on the morphological study, a revised diagnosis of the genus is provided, including the previously unknown female and fifth instar immatures. Primascena subita is redescribed and P. empsycha n. spec. and P. ruprechtiae n. spec. are formally described and illustrated. An identification key is provided for the species of Primascena. A cladistic morphological analysis supports the placement of the two new species in Primascena, and of this genus in the Aphalaroidinae. It is sister to all but Aphalaroida, though with little support. The two Brazilian species develop on Ruprechtia spp. (Polygonaceae: Eriogonoideae), an unusual psyllid host. Immatures of P. ruprechtiae are free-living on the lower leaf face and do not induce galls.