Orange trees (Citrus × sinensis (L.) Osbeck) are the third-most cultivated citrus fruit species in Chile. In recent years, several trees in three orange orchards of ‘Lane late’ and ‘Fukumoto’ cultivars grafted on ‘Robidoux’ trifoliate orange (Poncirus trifoliata (L.) Raf.) have shown chlorosis, canopy reduction, wilting, root necrosis, defoliation, and plant death symptoms. This study aims to characterize the morphological symptoms observed in diseased orange trees in central Chile and identify the fungal pathogens that are involved. Isolation and morphological characterization of the pathogens were conducted by using different culture media. A total of 53 isolates were obtained, morphologically characterized and 12 isolates were selected for molecular identification. The isolates were identified using ITS, TEF-1α, and RPB2 regions. Two Fusarium species complexes were identified, Neocosmospora (Fusarium) solani (FSSC) and F. oxysporum (FOSC), based on >99% identity. Pathogenicity tests were conducted on young orange seedlings under greenhouse conditions. Results indicated that two months post inoculation, trifoliate orange seedlings displayed root rot symptoms such as necrosis, vascular discoloration, and wilting. FSSC and FOSC were re-isolated from necrotic seedling roots and identified through a combination of morphological traits and molecular techniques. This is the first detailed report of this disease, attributed to FSSC and FOSC, in orange orchards in Chile. These diagnostic results represent the first step in developing adequate phytosanitary programs for managing this disease.
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