All organisms need a border delineating an internal space that is buffered against the fluctuating challenges of the outer world. These borders, at the same time, have to reconcile stability with dynamics and therefore are anything else but simple surfaces. Evolutionary processes very often are targeted to changes of biological borders, for instance, when organisms intrude (or are devoured) and subsequently maintain a partial border integrity. It is mostly the extent to which this border integrity is maintained or modulated that sets the frame for interactions that can range from symbiogenesis to biotrophic pathogenicity. The selective permeability of borders will ensure the maintenance of an internal homeostasis, and specific adherence to cell borders often defines the specificity of organismal interactions. In other words, biological borders are the sites where the identity of organisms is negotiated by interaction with the external world including other organisms. Several reviews and original papers in the current issue highlight different aspects of this fascinating biological phenomenon for examples from different domains of life. Microtubule-based flagellar beat represents, along with amoeboid movements, a central mechanism for eukaryotic motility and is located at the external border of many protozoan, animal, and generative plant cells. The evolutionary origin of eukaryotic flagellae seems to be linked with originally ectoparasitic spirochaete-like bacteria that subsequently were domesticated in consequence of an endosymbiotic event. This might be one explanation for the fact that flagellae, in many aspects, behave as closed regulatory systems posing interesting questions with respect to the maintenance of their homeostasis. The work by Williamson et al. (2012) in the current issue investigates how the transport of flagellar components to the growing tip of the flagellum is balanced with the exit of turnover products. This transport involves directional microtubule motors (kinesin-II for transport to the tip and dyneins for the retrograde transport) that form two complexes, termed A and B. Using conditional temperaturesensitive mutants of the model Chlamydomonas reinhardtii, they can show that the B complex confers dynein import, whereas the A complex is responsible for dynein exit from the flagellum. The initiation of flagellar differentiation is linked with a widely distributed, functionally diverse group of proteins, called centrins, reviewed by Zhang and He (2012) in the current issue. These calcium-binding proteins are organised in distinct domains that differ in structure and confer quite diverse functions to the different members of the centrin family. In addition to a participation of microtubule nucleation, they have also been shown a long time ago to participate in flagellar function (Melkonian 1979). These centrin functions are surprisingly divergent and can be not only structural, as shown for one of the Chlamydomonas centrins associated with the inner dynein arms, but also regulatory, as centrin 1 from Paramecium caudatum that controls the calcium channels that are responsible in ciliary reversal. Although the border usually is located at the outer surface of an organism, this does not necessarily need to be the case. The endodermis of vascular plants represents an interesting exception of the rule that the border is outside. Whereas the outer layers of the root allow free diffusion of the external medium by mobility through the apoplast, the endodermis sorts and selects nutrients and ions and thus represents the true border, where a fluctuating exterior is separated from a buffered interior. The core element of this border function is a cell-wall modification, where a water-impermeable Handling Editor: Peter Nick