Chromite is a critical mineral that is of great significance for the development of metallurgical, chemical, and other industries. In order to study the deep ore prospecting methods of ophiolite-type chromitite, we have carried out plane-profile geological and mineral surveys, as well as high-precision gravity, magnetic, and controlled source audio-frequency magnetotelluric (CSAMT) measurements in the Sartohay, West Junggar. Based on the analysis, interpretation, and inference of multi-source geological information, a three-dimensional (3D) geological model of the typical mining area in Sartohay District was established. The results show that Sartohay ophiolite was occurred in the form of rootless tectonic blocks and generally displayed deformation and metamorphism (e.g., oblique thrust, transverse extrusion, and lateral strike slip). Sartohay ophiolite is in tectonic contact with surrounding strata. Several northwest dipping high-angle thrust faults are developed at the contact sites and inside the ophiolite rock mass, showing a thrust imbricated structure. Meanwhile, ophiolite in the modeling area is a NW-trending monoclinic rock mass. The base surface of the ophiolite is obliquely distributed in an “N-like” shape, and the chromitite bearing lithofacies zones also have a NW-trending distribution. Geophysical data reveal that the studied mining area is characterized by a layered electrical structure in the vertical direction. The upper layer displays a high-resistivity agglomerate and a low-resistivity band distributed alternately, while the lower layer is a complete high-resistivity block. Combined with the deposit characteristics in Sartohay, it is considered that the morphological occurrence, geological structure, lithology, and lithofacies of ophiolite control the spatial distribution of related chromitites. The dunite-harzburgite lithofacies belts, highly strain zones, and strong tectonic alteration belts of the ophiolite rock mass are significant sites for the chromite ore bodies/groups occurrence. This study provides approaches for researching on the production laws of ophiolite-type chromitite and supplys a prospecting pattern for deep concealed orebodies.