Chinese Wheat Research Articles

Identifying cis-Acting Elements Associated with the High Activity and Endosperm Specificity of the Promoters of Genes Encoding Low-Molecular-Weight Glutenin Subunits in Common Wheat (Triticum aestivum).

Low-molecular-weight glutenin subunits (LMW-GSs) associated with bread-baking quality and flour nutrient quality accumulate in endosperms of common wheat and related species. However, the mechanism underlying the expression regulation of genes encoding LMW-GSs has not been fully elucidated. In this study, we identified LMW-D2 and LMW-D7, which are highly and weakly expressed, respectively, via the analysis of RNA-sequencing data of Chinese Spring wheat and wheat transgenic lines transformed with 5' deletion promoter fragments and GUS fusion constructs. The 605-bp fragment upstream of the LMW-D2 start codon could drive high levels of GUS expression in the endosperm. The truncated endosperm box located at the -300 site resulted in the loss of LMW-D2 promoter activity, and a single-nucleotide polymorphism on the GCN4 motif was closely related to the expression of LMW-GSs. TCT and TGACG motifs, as well as the others located on the 5' distal end, might also be involved in the transcription regulation of LMW-GSs. In transgenic lines, fusion proteins of LMW-GS and GUS were deposited into protein bodies. Our findings provide new insights into the mechanism underlying the transcription regulation of LMW-GSs and will contribute to the development of wheat endosperm as a bioreactor for the production of nutraceuticals, antibodies, vaccines, and medicinal proteins.

Molecular identification and validation of four stable QTL for adult-plant resistance to powdery mildew in Chinese wheat cultivar Bainong 64.

Four stable QTL for adult-plant resistance (APR) to powdery mildew were identified on chromosome arms 1DL, 2BS, 2DL, and 6BL in the widely grown Chinese wheat cultivar Bainong 64. These QTL had no effect on response to stripe rust or leaf rust. Wheat powdery mildew, caused by Blumeria graminis f. sp. tritici (Bgt), is a devastating fungal disease. Seedlings of Chinese wheat Bainong 64 are susceptible to Bgt, but adult plants have maintained resistance since it was released in 1996. A population of 171 recombinant inbred lines (RILs) developed from cross Jingshuang 16/Bainong 64 (JS16/BN64) was used to dissect genetic components of powdery mildew resistance. A genetic map comprising 5383 polymorphic markers was constructed using the 15K SNP chip and kompetitive allele-specific PCR (KASP) markers. Composite interval mapping identified four stable QTL with favorable alleles all from BN64 on chromosome arms 1DL, 2BS, 2DL, and 6BL in at least four environments. They accounted for 8.3%, 13.8%, 14.4%, and 9.0% of the total phenotypic variation explained (PVE) in maximum, respectively. QPmjbr.caas-1DL, situated about 22Mb from centromere, is probably a new QTL. QPmjbr.caas-2DL located near the end of arm 2DL and explained the largest PVE. Using genetic maps populated with KASP markers, QPmjbr.caas-2BS and QPmjbr.caas-6BL were fine mapped to a 1.8cM genetic intervals spanning 13.6Mb (76.0-89.6Mb) and 1.7cM and 4.9Mb (659.9-664.8Mb), respectively. The four QTL independent of stripe rust and leaf rust resistance were validated for powdery mildew resistance in another RIL population related to BN64 and a cultivar panel using representative KASP markers. Since BN64 has been a leading cultivar and an important breeding parent in China, the QTL and markers reported in this study will be useful for marker-assisted selection of APR.

The impact of participation in agricultural industry organizational models on crop yields: evidence from Chinese wheat growers

Increasing income for grain farmers is crucial to mobilise farmers’ incentive for grain cultivation. This article, based on the survey data of 2032 wheat growers in Anhui Province, China, employs the Logit model, multinomial Logit model, and entropy balance-OLS regression method to empirically analyze the factors influencing wheat growers’ participation in agricultural industrial organization models and the impact of their participation decisions on planting returns. The research found that: (1) Wheat growers with richer resource endowments are more likely to participate in agricultural industrial organization models. Factors such as household head’s education level, training experience, quality of arable land, scale of operation, and labor endowment are crucial determinants of wheat growers’ decisions to participate in industrial organization models. (2) Participation in agricultural industrial organizations significantly enhances the net income of wheat growers. Comparatively, the income-boosting effect is more pronounced for those participating in the “household + farmer cooperatives/agricultural enterprises” model. (3) The mechanisms through which wheat growers’ participation in different agricultural industrial organization models affects their crop yields vary. The income-enhancing effects of wheat growers' participation in the “household + farmer cooperatives/agricultural enterprises” model of industrial organization primarily stem from the improvement in land productivity and market bargaining power. On the other hand, the income-enhancing effects of participation in the “household + village collective + farmer cooperatives/agricultural enterprises” model are mainly attributed to the improvement in market bargaining power. The policy implication is that priority should be given to cultivating and developing industrial organisations based on the model of “household + farmers’ co-operatives/agribusinesses” in regions where farmers are richly endowed with resources, and at the same time, the development of industrial organisations based on the model of “household + village collectives + farmers’ co-operatives/agribusinesses” should be supplemented in accordance with local conditions. At the same time, the development of “household + village collectives + farmers’ cooperatives/agribusinesses” mode is supplemented according to local conditions.

A promising QTL QSns.sau-MC-3D.1 likely superior to WAPO1 for the number of spikelets per spike of wheat shows no adverse effects on yield-related traits.

A likely new locus QSns.sau-MC-3D.1 associated with SNS showing no negative effect on yield-related traits compared to WAPO1 was identified and validated in various genetic populations under multiple environments. The number of spikelets per spike (SNS) is one of the crucial factors determining wheat yield. Thus, improving our understanding of the genes that regulate SNS could help develop wheat varieties with higher yield. In this study, a recombinant inbred line (RIL) population (MC) containing 198 lines derived from a cross between msf and Chuannong 16 (CN16) was used to construct a genetic linkage map using the GenoBaits Wheat 16K Panel. The genetic map contained 5,991 polymorphic SNP markers spanning 2,813.25cM. A total of twelve QTL for SNS were detected, and two of them, i.e., QSns.sau-MC-3D.1 and QSns.sau-MC-7A, were stably expressed. QSns.sau-MC-3D.1 had high LOD values ranging from 4.99 to 11.06 and explained 9.71-16.75% of the phenotypic variation. Comparison of QSns.sau-MC-3D.1 with previously reported SNS QTL suggested that it is likely a novel one, and two kompetitive allele-specific PCR (KASP) markers were further developed. The positive effect of QSns.sau-MC-3D.1 was also validated in three biparental populations and a diverse panel containing 388 Chinese wheat accessions. Genetic analysis indicated that WHEAT ORTHOLOG OFAPO1 (WAPO1) was a candidate gene for QSns.sau-MC-7A. Pyramiding of QSns.sau-MC-3D.1 and WAP01 had a great additive effect increasing SNS by 7.10%. Correlation analysis suggested that QSns.sau-MC-3D.1 was likely independent of effective tiller number, plant height, spike length, anthesis date, and thousand kernel weight. However, the H2 haplotype of WAPO1 may affect effective tiller number and plant height. These results indicated that utilization of QSns.sau-MC-3D.1 should be given priority for wheat breeding. Geographical distribution analysis showed that the positive allele of QSns.nsau-MC-3D.1 was dominant in most wheat-producing regions of China, and it has been positively selected among modern cultivars released in China since the 1940s. Gene prediction, qRT-PCR analysis, and sequence alignment suggested that TraesCS3D03G0216800 may be the candidate gene of QSns.nsau-MC-3D.1. Taken together, these results enrich our understanding of the genetic basis of wheat SNS and will be useful for fine mapping and cloning of the gene underlying QSns.sau-MC-3D.1.

Quality traits analysis of 153 wheat lines derived from CIMMYT and China.

In order to understand the difference of quality for Chinese and CIMMYT wheat varieties (lines), we selected 153 wheat germplasm from both China and CIMMYT to explore the contribution relationship of different allelic variation combinations to wheat quality through genotyping and phenotyping, including grain hardness, polyphenol oxidase (PPO) activity, lipoxygenase (LOX) activity, yellow pigment (YP) content and protein content. In terms of flour milling quality, Chinese wheat varieties were mainly carrying Pina-D1a/Pinb-D1b, accounting for 32.0% of the total tested varieties, while the CIMMYT wheat lines were mainly carrying Pina-D1b/Pinb-D1a with 45.8% of the total collection. The distribution frequencies of subunit 1/2* and 5 + 10 were 47.0% and 42.5%, respectively, in CIMMYT varieties, however they were only 31.4% and 13.7% respectively of the Chinese wheat tested varieties. In addition, the proportion of phytoene synthase (PSY) allele, PPO allele and LOX active allele were roughly the same between Chinese and CIMMYT varieties. Based on the present study, we found that Pina gene had a greater impact on grain hardness value than Pinb gene; The influence of PPO-A1 gene on polyphenol oxidase activity was more significant than PPO-D1 gene. The high protein content of varieties mostly containing hardness genes and 1/2*/5 + 10 subunit combinations. Based on the present study, we found that the quality gene distribution of Chinese and CIMMYT varieties was quite different, for instance, the high-quality HMW-GS subunits of Chinese varieties were lower than CIMMYT lines. It will be much useful for Chinese wheat breeders to develop good quality wheat variety by crossing with 3 good strong gluten CIMMYT wheat lines by molecular marker-assisted selection.

Slow stripe rusting in Chinese wheat Jimai 44 conferred by Yr29 in combination with a major QTL on chromosome arm 6AL.

YrJ44, a more effective slow rusting gene than Yr29, was localized to a 3.5-cM interval between AQP markers AX-109373479 and AX-109563479 on chromosome 6AL. "Slow rusting" (SR) is a type of adult plant resistance (APR) that can provide non-specific durable resistance to stripe rust in wheat. Chinese elite wheat cultivar Jimai 44 (JM44) has maintained SR to stripe rust in China since its release despite exposure to a changing and variable pathogen population. An F2:6 population comprising 295 recombinant inbred lines (RILs) derived from a cross between JM44 and susceptible cultivar Jimai 229 (JM229) was used in genetic analysis of the SR. The RILs and parental lines were evaluated for stripe rust response in five field environments and genotyped using the Affymetrix Wheat55K SNP array and 13 allele-specific quantitative PCR-based (AQP) markers. Two stable QTL on chromosome arms 1BL and 6AL were identified by inclusive composite interval mapping. The 1BL QTL was probably the pleiotropic gene Lr46/Yr29/Sr58. QYr.nwafu-6AL (hereafter named YrJ44), mapped in a 3.5-cM interval between AQP markers AX-109373479 and AX-109563479, was more effective than Yr29 in reducing disease severity and relative area under the disease progress curve (rAUDPC). RILs harboring both YrJ44 and Yr29 displayed levels of SR equal to the resistant parent JM44. The AQP markers linked with YrJ44 were polymorphic and significantly correlated with stripe rust resistance in a panel of 1,019 wheat cultivars and breeding lines. These results suggested that adequate SR resistance can be obtained by combining YrJ44 and Yr29 and the AQP markers can be used in breeding for durable stripe rust resistance.

Fine mapping and transcriptome sequencing reveal candidate genes conferring all-stage resistance to stripe rust on chromosome arm 1AL in Chinese wheat landrace AS1676

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), threatens wheat production worldwide, and resistant varieties tend to become susceptible after a period of cultivation owing to the variation of pathogen races. In this study, a new resistance gene against Pst race CYR34 was identified and predicted using the descendants of a cross between AS1676, a highly resistant Chinese landrace, and Avocet S, a susceptible cultivar. From a heterozygous plant from a F7 recombinant inbred line (RIL) population lacking the Yr18 gene, a near-isogenic line (NIL) population was developed to map the resistance gene. An all-stage resistance gene, YrAS1676, was identified on chromosome arm 1AL via bulked-segregant exome-capture sequencing. By analyzing a large NIL population consisting of 6537 plants, the gene was further mapped to the marker interval between KA1A_485.36 and KA1A_490.13, spanning 485.36–490.13 Mb on 1AL. A total of 66 annotated genes have been reported in this region. To characterize and predict the candidate gene(s), an RNA-seq was performed using NIL-R and NIL-S seedlings 3 days after CYR34 inoculation. Compared to NIL-S plants, NIL-R plants showed stronger immune reaction and higher expression levels of genes encoding pathogenesis-associated proteins. These differences may help to explain why NIL-R plants were more resistant to Pst race CYR34 than NIL-S plants. By combining fine-mapping and transcriptome sequencing, a calcium-dependent protein kinase gene was finally predicted as the potential candidate gene of YrAS1676. This gene contained a single-nucleotide polymorphism. The candidate gene was more highly expressed in NIL-R than in NIL-S plants. In field experiments with Pst challenge, the YrAS1676 genotype showed mitigation of disease damage and yield loss without adverse effects on tested agronomic traits. These results suggest that YrAS1676 has potential use in wheat stripe rust resistance breeding.

Supramolecular Fluorescence Sensor Array Based on Cucurbit[8]uril Complexes Used for the Detection of Multiplex Quaternary Ammonium Pesticides.

The simultaneous detection of multiple quaternary ammonium pesticides (QAPs) in water is a challenge due to their high solubility in water and similar structures. In this paper, we have developed a quadruple-channel supramolecular fluorescence sensor array for the simultaneous analysis of five QAPs, including paraquat (PQ), diquat (DQ), difenzoquat (DFQ), mepiquat (MQ), and chlormequat (CQ). Not only were QAP samples of different concentrations (10, 50, and 300 μM) in water distinguished with 100% accuracy but also single QAP and binary QAP mixed samples (DFQ-DQ) were sensitively quantified. Our experimental interference study confirmed that the developed array has good anti-interference ability. The array can quickly identify five QAPs in river and tap water samples. In addition, it also qualitatively detected QAP residues in Chinese cabbage and wheat seedlings extract. This array has rich output signals, low cost, easy preparation, and simple technology, demonstrating great potential in environmental analysis.

Identification of genes for leaf rust resistance in seedlings of wheat cultivars from the Yellow-Huai Basin in China and slow rusting observations in field trials

Wheat leaf rust is a devastating disease worldwide. Identification of leaf rust resistance genes in seedlings and of genes for slow rusting are important in resistance breeding and for gene deployment to control the disease. A total of 108 wheat cultivars from the Beijing and Shandong province and a set of 36 differentials, mostly near-isogenic lines in the background of Thatcher with known leaf rust resistance genes, were tested with 20 Puccinia triticina pathotypes (FHJS1, FGBQ,PGJQ, SHJT, FHGQ, PHTT1, FHGQ, FHGQ, PHJS, THSM, FHSQ, PHST, PRSQ, FNTQ, PHGM, KHGQ, PHTT2, TGTT, FHJS2, NHHT) at the seedling stage in the greenhouse. The cultivars and differentials were also planted in the field to test their slow rusting resistance using a mixture of races at Baoding, Hebei province and Zhoukou, Henan province, for two consecutive years. Ten leaf rust resistance genes, Lr1, 9, 10, 19, 20, 24, 26, 34, 37 and 46 were identified in the 57 commercial wheat cultivars, either singly or in combination, using molecular markers. Combined, the results from gene postulation and marker detection showed that one or more of the genes Lr1, 3, 10, 14a, 14b, 26, 36, 39, 34 and 46, were present in 57 cultivars, and that no known resistance gene was present in the remaining 51 cultivars. The resistance gene Lr26 was present in 42 cultivars, and nine cultivars contained Lr1. Lr46 was present in 10 cultivars, as indicated by the presence of the closely linked marker csLV46G22. Seven genotypes were identified as possibly carrying the gene Lr39. Lr3 and 10 were found in six and four genotypes, respectively. The ggenes Lr14b and 34 were each present in three cultivars, while evidence for the presence of Lr14a and 36 was obtained in single genotypes. Finally, 12 cultivars showed slow rusting resistance at two locations in two crop seasons. The identification of leaf rust resistance genes in Chinese wheat cultivars will be helpful for gene deployment to control leaf rust.

Impacts of straw return coupled with tillage practices on soil organic carbon stock in upland wheat and maize croplands in China: A meta-analysis

Despite numerous individual studies evaluating the impact of straw return on soil organic carbon (SOC) stock in upland wheat and maize croplands in China using no-tillage (NTS), rotary tillage (RTS), and deep tillage (DTS) practices, the results have shown inconsistency. In addition, several factors influence the effects of various tillage practices with straw return on SOC stock that are not well understand. In this study, we conducted a meta-analysis of 764 comparisons to determine the combined impact of SOC stock in the topsoil (0–20 cm) and subsoil (20–40 cm) layers, while considering factors such as climate conditions, management practices, and initial soil properties. The results indicate that straw return with different tillage practices significantly improved SOC stock in both soil layers compared to straws removal. The increase in topsoil SOC stock was nearly identical for NTS (7.38 %) and DTS (7.17 %), compared to the RTS. However, the increase in subsoil SOC stock was significantly higher for DTS (28.8 %). According to subgroup analysis, NTS has been more effective in increasing topsoil SOC stock in regions with medium temperature (10–15 °C) and low precipitation (<400 mm), when used in a single cropping system. However, in regions with higher temperature (>15 °C) and precipitation (>800 mm), DTS is more effective in increasing SOC stock in both topsoil and subsoil layers in a double cropping system. Long-term (11–20 years) DTS resulted in a significant increase in SOC stock in the topsoil (19.2 %) and subsoil (18.5 %), while the increased effects of NTS on SOC stock were only in topsoil layer (17.1 %). The effects of straw return on SOC stock were also found to be associated with soil texture, with NTS having a greater impact on sandy to loam soils, and DTS having a greater impact on clay soils. Furthermore, a significant (P < 0.01) positive linear relationship was observed between annual carbon (C) input and SOC sequestration in the topsoil under NTS, as well as in both soil layers under DTS. These findings have important implications for enhancing SOC in Chinese upland wheat and maize cropland soils through optimizing straw return, given that more than 518 million tons of crop straw are produced annually.

Characterization of four commercial waxy wheats developed in China

AbstractBackground and ObjectivesAs the interest in use of waxy wheat in food applications continues to grow, it is important to fully understand characteristics of waxy wheats. To the best of our knowledge, there was no previous study reporting a complete characterization of commercial waxy wheats developed in China, especially properties of wheat kernels, dough, wet milling, gluten, and starch. To promote the industrial utilization of waxy wheat, four Chinese commercial waxy wheats were collected and characterized.FindingsFour commercial waxy wheats commercialized in China were sound medium hard wheats. Care must be taken during harvesting and storage of waxy wheats since the waxy wheat flours were very sensitive to the endogenous α‐amylase even at a very low level of enzyme activity. Rapid viscosity analyzer had a good potential for evaluating the sprout damage of waxy wheat. Dough rheological properties and gluten index showed that the four waxy wheats had weak gluten quality, agreeing with wet‐milling performance. The waxy wheat starches had higher onset, peak, and conclusion gelatinization temperatures than normal wheat starch. While the waxy wheat starches showed lower pasting temperature and higher peak viscosity than normal wheat starch.ConclusionsResults suggested that the four commercial waxy wheats varied in kernel characteristics, protein and starch contents, wet‐milling performance, gluten quality, dough rheological properties and pasting properties, which might provide a wide range of applications.Significance and NoveltyThe research work provides useful information for wheat breeders to breed waxy wheat suitable for industrial applications and for scientists to promote the use of waxy wheat flour and starch in food applications.

Molecular characterization and validation of adult-plant stripe rust resistance gene Yr86 in Chinese wheat cultivar Zhongmai 895.

Adult-plant stripe rust resistance gene Yr86 in Chinese wheat cultivar Zhongmai 895 was mapped to the physical interval 710.2-713.2Mb on the long arm of chromosome 2A. Adult-plant resistance to stripe rust is generally more durable than all-stage resistance. Chinese wheat cultivar Zhongmai 895 showed stable stripe rust resistance at the adult-plant stage. To map the genetic loci underlying its resistance, 171 doubled haploid (DH) lines from a Yangmai 16/Zhongmai 895 cross were genotyped with the wheat 660K SNP chip. Disease severities of the DH population and parents were assessed in four environments. A major QTL designated QYryz.caas-2AL was mapped to interval 703.7-715.3Mb on the long arm of chromosome 2A using both chip-based and KASP (kompetitive allele-specific PCR) marker-based methods, explaining 31.5 to 54.1% of the phenotypic variances. The QTL was further validated in an F2 population of cross Emai 580/Zhongmai 895 with 459 plants and a panel of 240 wheat cultivars using KASP markers. Three reliable KASP markers predicted a low frequency (7.2-10.5%) of QYryz.caas-2AL in the test panel and remapped the gene to the physical interval 710.2-713.2Mb. Based on different physical positions or genetic effects from known genes or QTL on chromosome arm 2AL, the gene was predicted to be a new one for adult-plant stripe rust resistance and was named Yr86. Twenty KASP markers linked to Yr86 were developed in this study based on wheat 660K SNP array and genome re-sequencing. Three of them are significantly associated with stripe rust resistance in natural population. These markers should be useful for marker-assisted selection and also provide a starting point for fine mapping and map-based cloning of the new resistance gene.

Creating large EMS populations for functional genomics and breeding in wheat

Wheat germplasm is a fundamental resource for basic research, applied studies, and wheat breeding, which can be enriched normally by several paths, such as collecting natural lines, accumulating breeding lines, and introducing mutagenesis materials. Ethyl methane sulfonate (EMS) is an alkylating agent that can effectively introduce genetic variations in a wide variety of plant species. In this study, we created a million-scale EMS population (MEP) that started with the Chinese wheat cultivars 'Luyan 128', 'Jimai 38', 'Jimai 44', and 'Shannong 30'. In the M1 generation, the MEP had numerous phenotypical variations, such as >3,000 chlorophyll-deficient mutants, 2,519 compact spikes, and 1,692 male sterile spikes. There were also rare mutations, including 30 independent tillers each with double heads. Some M1 variations of chlorophyll-deficiency and compact spikes were inheritable, appearing in the M2 or M3 generations. To advance the entire MEP to higher generations, we adopted a single-seed descendent (SSD) approach. All other seed composites of M2 were used to screen other agronomically important traits, such as the tolerance to herbicide quizalofop-P-methyl. The MEP is available for collaborative projects, and provides a valuable toolbox for wheat genetics and breeding for sustainable agriculture.

Transfer of the high-temperature adult-plant stripe rust resistance gene Yr62 in four Chinese wheat cultivars.

The online version contains supplementary material available at 10.1007/s11032-023-01393-1.

Genome-Wide Analysis of MYB Transcription Factors in the Wheat Genome and Their Roles in Salt Stress Response.

Large and rapidly increasing areas of salt-affected soils are posing major challenges for the agricultural sector. Most fields used for the important food crop Triticum aestivum (wheat) are expected to be salt-affected within 50 years. To counter the associated problems, it is essential to understand the molecular mechanisms involved in salt stress responses and tolerance, thereby enabling their exploitation in the development of salt-tolerant varieties. The myeloblastosis (MYB) family of transcription factors are key regulators of responses to both biotic and abiotic stress, including salt stress. Thus, we used the Chinese spring wheat genome assembled by the International Wheat Genome Sequencing Consortium to identify putative MYB proteins (719 in total). Protein families (PFAM) analysis of the MYB sequences identified 28 combinations of 16 domains in the encoded proteins. The most common consisted of MYB_DNA-binding and MYB-DNA-bind_6 domains, and five highly conserved tryptophans were located in the aligned MYB protein sequence. Interestingly, we found and characterized a novel 5R-MYB group in the wheat genome. In silico studies showed that MYB transcription factors MYB3, MYB4, MYB13 and MYB59 are involved in salt stress responses. qPCR analysis confirmed upregulation of the expression of all these MYBs in both roots and shoots of the wheat variety BARI Gom-25 (except MYB4, which was downregulated in roots) under salt stress. Moreover, we identified nine target genes involved in salt stress that are regulated by the four MYB proteins, most of which have cellular locations and are involved in catalytic and binding activities associated with various cellular and metabolic processes.

Wheat NAC-A18 regulates grain starch and storage proteins synthesis and affects grain weight.

Wheat NAC-A18 regulates both starch and storage protein synthesis in the grain, and a haplotype with positive effects on grain weight showed increased frequency during wheat breeding in China. Starch and seed storage protein (SSP) directly affect the processing quality of wheat grain. The synthesis of starch and SSP are also regulated at the transcriptional level. However, only a few starch and SSP regulators have been identified in wheat. In this study, we discovered a NAC transcription factor, designated as NAC-A18, which acts as a regulator of both starch and SSP synthesis. NAC-A18, is predominately expressed in wheat developing grains, encodes a transcription factor localized in the nucleus, with both activation and repression domains. Ectopic expression of wheat NAC-A18 in rice significantly decreased starch accumulation and increased SSP accumulation and grain size and weight. Dual-luciferase reporter assays indicated that NAC-A18 could reduce the expression of TaGBSSI-A1 and TaGBSSI-A2, and enhance the expression of TaLMW-D6 and TaLMW-D1. A yeast one hybrid assay demonstrated that NAC-A18 bound directly to the cis-element "ACGCAA" in the promoters of TaLMW-D6 and TaLMW-D1. Further analysis indicated that two haplotypes were formed at NAC-A18, and that NAC-A18_h1 was a favorable haplotype correlated with higher thousand grain weight. Based on limited population data, NAC-A18_h1 underwent positive selection during Chinese wheat breeding. Our study demonstrates that wheat NAC-A18 regulates starch and SSP accumulation and grain size. A molecular marker was developed for the favorable allele for breeding applications.

Mapping of leaf rust resistance genes in common wheat ‘Guinong08-6’

Wheat leaf rust (Puccinia triticina Eriks.), a devastating disease of wheat in the world, causes severe yield losses and therefore the development of resistant cultivars is very important. Here, a Chinese wheat line (Guinong08-6) showed adult-plant resistance against mixed fungal isolates of leaf rust, which is common in Guiyang region. It was crossed with a susceptible wheat line (Guinong19) to develop F1, F2, and F3 hybrids. Combined SSR and STS markers were used to map leaf rust resistance genes in Guinong08-6, and the resistance phenotype of Guinong08-6 was co-regulated by two complementary dominant genes, named LrGn08-6A and LrGn08-6B. LrGn08-6A was mapped to chromosome 2AS with markers URIC-LN2 and Xgpw2204, which flanked the gene at distances of 1.8 centimorgan (cM) and 14.83 cM, respectively. LrGn08-6B was mapped to chromosome 4DL with markers Xgpw342 and Xbarc93, which both flanked the gene at a distance of 26.57 cM. Genetic and molecular marker analyses demonstrated that LrGn08-6A, which was inherited from Aegilops ventricosa may be the resistance gene Lr37, while LrGn08-6B may be a newly discovered leaf rust resistance gene.

Prediction of Food Safety Risk Level of Wheat in China Based on Pyraformer Neural Network Model for Heavy Metal Contamination.

Heavy metal contamination in wheat not only endangers human health, but also causes crop quality degradation, leads to economic losses and affects social stability. Therefore, this paper proposes a Pyraformer-based model to predict the safety risk level of Chinese wheat contaminated with heavy metals. First, based on the heavy metal sampling data of wheat and the dietary consumption data of residents, a wheat risk level dataset was constructed using the risk evaluation method; a data-driven approach was used to classify the dataset into risk levels using the K-Means++ clustering algorithm; and, finally, on the constructed dataset, Pyraformer was used to predict the risk assessment indicator and, thus, the risk level. In this paper, the proposed model was compared to the constructed dataset, and for the dataset with the lowest risk level, the precision and recall of this model still reached more than 90%, which was 25.38-4.15% and 18.42-5.26% higher, respectively. The model proposed in this paper provides a technical means for hierarchical management and early warning of heavy metal contamination of wheat in China, and also provides a scientific basis for dynamic monitoring and integrated prevention of heavy metal contamination of wheat in farmland.

Effects of protein-polysaccharide extracted from Auricularia auricula-judae mushroom on the quality characteristics of Chinese wheat noodles

This study revealed the effect of protein-polysaccharide extracted from Auricularia auricula-judae fruiting bodies (AAP) on the textural properties and microstructures of Chinese wheat noodles. In addition, the underlying mechanisms were explored. AAP is a protein polysaccharide with a molecular weight of more than 104 Da. According to the RVA and DSC results, AAP increased the pasting (PV and FV) and thermal properties parameters (To, Tp, and Tc) of wheat starch. AAP also significantly increased β-sheet and β-turn (p < 0.05) in the secondary structure of gluten but decreased α-helix content and the sulfhydryl group. Additionally, AAP increased the hardness, adhesion, tensile force, and tension distance of wheat noodles and significantly reduced the cooking yield and cooking loss (p < 0.05). The cross-linking of protein molecular networks was promoted to enhance the compact microstructure of the dough detected by CLSM. Moreover, the water status was changed by AAP, forming more combined water in contact with gluten and starch through hydrogen bonds. A theoretical basis for the positive effects of mushroom polysaccharides on the quality of wheat food from the perspectives of physicochemical characteristics of wheat starch and gluten was provided in this study.

Pathogenic function of the natural variation of CP in WYMV and CWMV

The soil-borne viral disease, caused by wheat yellow mosaic virus (WYMV) and Chinese wheat mosaic virus (CWMV), is one of the most destructive wheat diseases in China. Considering the large wheat growing area in China, the genetic diversity of WYMV and CWMV could be high in the country. However, studies on genetic diversity of WYMV and CWMV in China are limited, making it difficult to prevent and control viral diseases on wheat. During 2021–2022, the wheat leaves with typical yellow mosaic virus symptoms were randomly collected from wheat fields in seven provinces. Nine WYMV and one CWMV isolates were identified in the samples using small RNA sequencing and RACE technology. Sequence alignment showed that several amino acid substitutions were occurred in the coat protein (CP) from these isolates. Moreover, we replaced the CP of WYMV and CWMV infectious clones with CP of newly identified isolates and found that natural variation of CP is involved in the pathogenicity of WYMV. Moreover, the WYMV infectious clones containing CP of the WYMV isolates from Junan at Shandong Province or Yangzhou at Jiangsu Province have enhanced WYMV infection in several local wheat resistance cultivars. Taken together, our findings suggest that the distribution of WYMV and CWMV in wheat growing areas has expanded in these years and the natural variation of viral genome is involved in pathogenicity of WYMV. Our results also provide a theoretical basis to explain the real distribution of wheat viral resistance varieties in China.