Chemical Shift Values Research Articles

Synthesis and Spatial Structure of 3-Phenylacrylic Acid Octahydroquinolizin-1-Ylmethyl Ester and 2-(Octahydroquinolizin-1-Ylmethyl)Isoindole-1,3-Dione

The reactions of lupinine alkaloid and its chlorine derivative with cinnamoyl chloride and 2-K-isoindole-1,3-dione were investigated to obtain 3-phenylacrylic acid octahydroquinolizin-1-ylmethyl ester and 2-(octahydroquinolizin-1-ylmethyl)isoindole-1,3-dione, respectively. The optimal conditions for carrying out the aforementioned reactions were determined, taking into account the nature of the solvent and medium. It was established that acylation of the molecule in a benzene medium, in the presence of trimethylamine, resulted in the formation of 3-phenylacrylic acid octahydroquinolizin-1-ylmethyl ester, with an 82% yield. It was demonstrated that the interaction of chlorolupinine with 2-K-isoindole-1,3-dione under Gabriel reaction conditions resulted in the formation of 2-(octahydroquinolizin-1-ylmethyl)isoindole-1,3-dione. The conformer with an axial orientation of the isoindole-1,3-dione substituent was observed to exhibit greater stability than the conformer with an equatorial orientation. The structure of the synthesized compounds was investigated by IR, 1H, and 13C NMR spectroscopy. The use of two-dimensional spectra in COSY (1H-1H) and HMQC (1H-13C) formats enabled the establishment of homo- and heteronuclear interactions, thereby confirming the structure of the compounds under investigation. The values of chemical shifts, multiplet and integrated intensity of 1H and 13C signals in one-dimensional NMR spectra of the novel compounds were determined. The crystal structures of 3-phenylacrylic acid octahydroquinolizin-1-ylmethyl ester and 2-(octahydroquinolizin-1-ylmethyl)isoindole-1,3-dione were elucidated through X-ray analysis.

Understanding the Interactions of Nanoparticles and Dissolved Organic Matter at the Molecular Level by 1H 2D Multi-Exponential Transverse Relaxation NMR Spectroscopy.

The interaction between humic acid (HA) and engineered nanoparticles (NPs) is critical in environmental sciences, especially for understanding the behavior of NPs in natural waters. This study employs 1H 2D Multi-Exponential Transverse Relaxation (METR) NMR spectroscopy to examine the molecular-level interactions between Pahokee Peat humic acid (HA) and carboxyl-functionalized iron oxide nanoparticles (NPCOs). First, 1H 2D METR NMR spectroscopy allowed not only the identification of HA in terms of its chemical composition but also the separation of molecules with the same chemical shift values but different rates of molecular tumbling. Then, using solutions with varying NPCO concentrations (0, 10, 40, and 100 μM), we observed significant changes in the T2 relaxation times of HA components, indicating interactions between HA and NPCO. Analysis showed the biggest effect on two chemical shift regions, corresponding to lipids and carbohydrates, revealing that smaller molecules within these regions exhibit the most significant changes in T2 values upon the addition of NPCO. This suggests that these molecules are the initial sites of interaction, with the entire HA system being affected at higher NPCO concentrations. These findings highlight the utility of METR NMR spectroscopy in studying complex environmental mixtures and provide insights into the behavior of HA and NPs, essential for understanding the fate of NPs in the environment.

Stabilization of the Compressed Planar Benzene Dianion in Inverse-Sandwich Rare Earth Metal Complexes.

For the first time, the capture of a planar antiaromatic benzene dianion in between two trivalent rare earth (RE) metal cations, each stabilized by two guanidinate ligands, is reported. The synthesized inverse-sandwich complexes [{(Me3Si)2NC(NiPr)2}2RE]2(µ-ƞ6:ƞ6-C6H6), (RE = Y (1), Dy (2), and Er (3)) feature a remarkably planar benzene dianion, previously not encountered for any metal ion prone to low or absent covalency. The -2 charge localization at the benzene ligand was deduced from the results obtained by single-crystal X-ray diffraction analyses, spectroscopy, magnetometry, and Density Functional Theory (DFT) calculations. In the 1H NMR spectrum of the diamagnetic Y complex 1, the equivalent proton resonance of the bridging benzene dianion ligand is drastically shifted to higher field in comparison to free benzene. This and the calculated highly positive Nucleus-Independent Chemical Shift (NICS) values are attributed to the antiaromatic character of the benzene dianion ligand. The crucial role of the ancillary guanidinate ligand scaffold in stabilizing the planar benzene dianion conformation was also elucidated by DFT calculations. Remarkably, the planarity of the benzene dianion originates from the stabilization of the π-type orbitals of the d-manifold and compression through its strong electrostatic interaction with the two REIII sites.

Stabilization of the Compressed Planar Benzene Dianion in Inverse‐Sandwich Rare Earth Metal Complexes

For the first time, the capture of a planar antiaromatic benzene dianion in between two trivalent rare earth (RE) metal cations, each stabilized by two guanidinate ligands, is reported. The synthesized inverse‐sandwich complexes [{(Me3Si)2NC(NiPr)2}2RE]2(µ–ƞ6:ƞ6–C6H6), (RE = Y (1), Dy (2), and Er (3)) feature a remarkably planar benzene dianion, previously not encountered for any metal ion prone to low or absent covalency. The ‐2 charge localization at the benzene ligand was deduced from the results obtained by single‐crystal X‐ray diffraction analyses, spectroscopy, magnetometry, and Density Functional Theory (DFT) calculations. In the 1H NMR spectrum of the diamagnetic Y complex 1, the equivalent proton resonance of the bridging benzene dianion ligand is drastically shifted to higher field in comparison to free benzene. This and the calculated highly positive Nucleus‐Independent Chemical Shift (NICS) values are attributed to the antiaromatic character of the benzene dianion ligand. The crucial role of the ancillary guanidinate ligand scaffold in stabilizing the planar benzene dianion conformation was also elucidated by DFT calculations. Remarkably, the planarity of the benzene dianion originates from the stabilization of the π‐type orbitals of the d‐manifold and compression through its strong electrostatic interaction with the two REIII sites.

1H NMR Chemical Shift Changes as a Result of Introduction of Carbonyl-Containing Protecting Groups Observed in Bornol and Isoborneol

Complete assignments of the 1H NMR chemical shifts for monoterpenes, borneol, and isoborneol, and their derivatives in which the secondary hydroxy group is protected with an acetyl group or a benzoyl group, have been made in CDCl3 and C6D6. Upon the protection of the hydroxy group with the carbonyl functional groups, or acetyl or benzoyl groups, many protons constituting the bicyclic ring exhibited downfield and upfield shifts in the chemical shift values, aiding in the unambiguous assignments of protons and carbons.

Protoporphyrin IX iron(II) revisited. An overview of the Mössbauer spectroscopic parameters of low-spin porphyrin iron(II) complexes.

Mössbauer parameters of low-spin six-coordinate [Fe(II)(Por)L2] complexes (where Por is a synthetic porphyrin; L is a nitrogenous aliphatic, an aromatic base or a heterocyclic ligand, a P-bonding ligand, CO or CN) and low-spin [Fe(Por)LX] complexes (where L and X are different ligands) are reported. A known point charge calculation approach was extended to investigate how the axial ligands and the four porphyrinato-N atoms generate the observed quadrupole splittings (ΔEQ) for the complexes. Partial quadrupole splitting (p.q.s.) and partial chemical shifts (p.c.s.) values were derived for all the axial ligands, and porphyrins reported in the literature. The values for each porphyrin are different emphasising the importance/uniqueness of the [Fe(PPIX)] moiety, (which is ubiquitous in nature). This new analysis enabled the construction of figures relating p.c.s and p.q.s values. The relationships presented in the figures indicates that strong field ligands such as CO can, and do change the sign of the electric field gradient in the [Fe(II)(Por)L2] complexes. The limiting p.q.s. value a ligand can have and still form a six-coordinate low-spin [Fe(II)(Por)L2] complex is established. It is shown that the control the porphyrin ligands exert on the low-spin Fe(II) atom limits its bonding to a defined range of axial ligands; outside this range the spin state of the iron is unstable and five-coordinate high-spin complexes are favoured. Amongst many conclusions, it was found that oxygen cannot form a stable low-spin [Fe(II)(Por)L(O2)] complex and that oxy-haemoglobin is best described as an [Fe(III)(Por)L(O2-)] complex, the iron is ferric bound to the superoxide molecule.

Synthesis, structure, and biological activity of sodium, zinc, and magnesium mono- and bis-1-alkoxy-4-(2′-naphthyl)-1,4-dioxo-2-buten-2-olates

The search for new biologically active compounds is a key area of chemical science. Therefore, the synthesis of compounds with a potentially bactericidal effect seems relevant. In order to extend the range of biologically active substances, the synthesis of sodium 4-(2’-naphthyl)-1,4-dioxo-1-ethoxy-2-buten-2-olate and sodium 1-butoxy-4-(2´-naphthyl)-1,4-dioxo-2-buten-2-olate was carried out by Claisen condensation of equimolar amounts of 2-acetonaphtone and dialkyloxalates in a non-polar medium in the presence of sodium as a condensing agent. Bidentate mononuclear metal chelates were obtained by the metal exchange reaction of sodium oxoenolates with Zn(II) and Mg(II) salts. The structure of the synthesized compounds was confirmed by infrared spectroscopy, (1Н, 13С) nuclear magnetic resonance spectroscopy, and mass spectrometry. The infrared spectra of solid samples of sodium oxoenolates and metal complexes contain bands of stretching vibrations of ester carbonyl groups, skeletal vibrations of aromatic rings, as well as “ether” bands due to vibrations of C–O–C bonds. The 1Н and 13С nuclear magnetic resonance spectra recorded in CDCl3 and Dimethyl sulfoxide-d6 are characterized by a complete set of all expected signals with chemical shift values that are well comparable with the reference data. In the mass spectra of the analyzed compounds, recorded in an acetonitrile solution in the electrospray mode, signals of [M+H]+ and [M+Na]+ protonated and cationized molecules are observed. The bactericidal action of the synthesized preparations was assessed using the agar well diffusion method in combination with the serial dilution method. The biological activity of sodium 4-(2’-naphthyl)-1,4-dioxo-1-ethoxy-2-buten-2-olate against Pseudomonas Aeruginosa and Staphylococcus Aureus, as well as sodium 1-butoxy-4-(2’-naphthyl)-1,4-dioxo-2-buten-2-olate against Pseudomonas Aeruginosa, was revealed. Pronounced resistance of Salmonella spp. to the studied compounds was established.

The impact of hetero-aromatic rings on optoelectronic and charge transport properties of fused polycyclic compounds

The structural, optoelectronic, and charge-transport properties of linearly fused polycyclic hydrocarbon molecules with heteroatoms (NH, O, S, and Se) in five-membered rings have been investigated using the DFT approach. The hybrid functional B3LYP in combination with the 6–311 + G (d,p) basis set is utilized in the Gaussian 16 W software package for all the calculations. The absorption and emission energies are investigated by using time-dependent density functional theory (TD-DFT) at the same level of theory. To investigate the stability of each molecule concerning its aromaticity, nucleus-independent chemical shift (NICS) values are computed. Electron affinity (EA), hole extraction potential (HEP), ionization potential (IP), and electron extraction potential (EEP) are also reported. The simulated hole (λ h) and electron (λ e) reorganization energies for the majority of the molecules are lower than the characteristics hole and electron-transporting materials. The reported fused polycyclic compounds may have potential applications in optoelectronic devices.

Semisynthesis, Structure Elucidation and Anti-Mycobacterium marinum Activity of a Series of Marine-Derived 14-Membered Resorcylic Acid Lactones with Interesting Ketal Groups.

The incidence of Mycobacterium marinum infection is on the rise; however, the existing drug treatment cycle is lengthy and often requires multi-drug combination. Therefore, there is a need to develop new and effective anti-M. marinum drugs. Cochliomycin A, a 14-membered resorcylic acid lactone with an acetonide group at C-5' and C-6', exhibits a wide range of antimicrobial, antimalarial, and antifouling activities. To further explore the effect of this structural change at C-5' and C-6' on this compound's activity, we synthesized a series of compounds with a structure similar to that of cochliomycin A, bearing ketal groups at C-5' and C-6'. The R/S configuration of the diastereoisomer at C-13' was further determined through an NOE correlation analysis of CH3 or CH2 at the derivative C-13' position and the H-5' and H-6' by means of a 1D NOE experiment. Further comparative 1H NMR analysis of diastereoisomers showed the difference in the chemical shift (δ) value of the diastereoisomers. The synthetic compounds were screened for their anti-microbial activities in vitro. Compounds 15-24 and 28-35 demonstrated promising activity against M. marinum, with MIC90 values ranging from 70 to 90 μM, closely approaching the MIC90 of isoniazid. The preliminary structure-activity relationships showed that the ketal groups with aromatic rings at C-5' and C-6' could enhance the inhibition of M. marinum. Further study demonstrated that compounds 23, 24, 29, and 30 had significant inhibitory effects on M. marinum and addictive effects with isoniazid and rifampicin. Its effective properties make it an important clue for future drug development toward combatting M. marinum resistance.

Synthesis, DFT investigation, antioxidant, molecular docking and ADME-T properties of N′-(1-benzylpiperidin-4-ylidene) furan-2-carbohydrazide derivatives against SARS-CoV-2 spike proteins

ABSTRACT A novel synthetic reaction was used to produce a piperidine derivative, specifically N′-(1-benzylpiperidin-4-ylidene)furan-2-carbohydrazide (BPFC). The structure of the synthesised compound was confirmed through FT-IR, 1H-NMR and 13C-NMR spectral analysis. DFT calculations were performed to optimise structural parameters and investigate Natural Bond Orbital (NBO) analysis, Frontier Molecular Orbitals (FMOs), Molecular Electrostatic Potentials, Mulliken Charge Analysis, and Non-linear Optical properties. The predicted chemical shift values align well with the expected results. The antioxidant properties of the newly synthesised compound were assessed using DPPH, ABTS, and H2O2 radical scavenging assays. Molecular docking studies were also carried out to explore the binding mechanism of the compound with COVID-19-related proteins, particularly 6WCF and 6LU7. Additionally, the synthesised compound was assessed for drug-likeness and ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) properties, revealing favourable pharmacokinetic profiles without any signs of toxicity.

1H, 13C, 15N NMR, and DFT Studies on Complex Formation of Zinc(II) Ion with Ethylenediamine in Ionic Liquid [C2mIm][TFSA

In bis(trifluoromethylsulfonyl)amide (TFSA-)-based ionic liquid (IL), 1-ethyl-3-methylimidazolium TFSA- ([C2mIm][TFSA]), the complex formation equilibria of zinc(II) ion (Zn2+) with ethylenediamine (EN) have been investigated. An EN molecule may coordinate with Zn2+ as a bidentate ligand. First, the formation of Zn2+-EN complexes in [C2mIm][TFSA] was confirmed from the difference of 1H and 13C NMR chemical shift values of EN molecules between [C2mIm][TFSA]-EN binary solvents and the 0.1 mol dm-3 Zn(TFSA)2/[C2mIm][TFSA]-EN solutions as a function of EN mole fraction xEN. Second, the stability constants of Zn2+-EN complexes formed in the IL were determined from the concentration ratio [EN]/[Zn2+] dependence of 15N NMR chemical shift values of the TFSA- N atom in the Zn2+/IL-EN solutions. In the IL, mono-, bis-, and tris-EN complexes are successively formed by 1:1 replacement of TFSA- anions coordinated with Zn2+ by EN molecules with increasing EN content. Third, 1H and 13C NMR measurements with the help of density functional theory (DFT) calculations were made on [C2mIm][TFSA]-EN binary solvents as a function of xEN to clarify key interactions to the mechanism of the complex formation. Fourth, the stability constants of Zn2+-EN complexes in the IL were compared with those in aqueous solutions. It was suggested that the hydrogen bonding of the EN molecule with the imidazolium ring H atoms and the TFSA- O atoms reduces the stability of the mono-EN complex in the IL. In contrast, the intracomplex hydrogen bonds between EN and TFSA- in the first coordination shell contribute to the higher stability of the bis-EN complex in the IL than that in aqueous solutions. The difference in the stability constants between the tris-EN complexes and hexaacetonitrile complexes, where acetonitrile (AN) molecules act as monodentate ligands, was interpreted in terms of the higher electron donicity of EN. Finally, to verify the present evaluation, the experimental 13C NMR chemical shift values of EN molecules in the solutions were compared with the theoretical values calculated by DFT using the stability constants determined.

Enhancing ketoprofen's solubility and anti-inflammatory efficacy with safe methyl-β-cyclodextrin complexation

Improved solubility and anti-inflammatory (AI) properties are imperative for enhancing the effectiveness of poorly water-soluble drugs, particularly non-steroidal anti-inflammatory drugs (NSAIDs). To address these critical issues, our focus is on obtaining NSAID materials in the form of inclusion complexes (IC) with methyl-beta-cyclodextrin (MCD). Ketoprofen (KTP) is selected as the NSAID for this study due to its potency in treating various types of pain, inflammation, and arthritis. Our objective is to tackle the solubility challenge followed by enhancing the AI activity. Confirmation of complexation is achieved through observing changes in the absorbance and fluorescence intensities of KTP upon the addition of MCD, indicating a 1:1 stoichiometric ratio. Phase solubility studies demonstrated improved dissolution rates after the formation of ICs. Further analysis of the optimized IC is conducted using FT-IR, NMR, FE-SEM, and TG/DTA techniques. Notable shifts in chemical shift values and morphological alterations on the surface of the ICs are observed compared to their free form. Most significantly, the IC exhibited superior AI and anti-arthritic (AA) activity compared to KTP alone. These findings highlight the potential of ICs in expanding the application of KTP, particularly in pharmaceuticals, where enhanced stability and efficacy of natural AIs and AAs are paramount.

Benzo[6,7]cyclohepta[1,2-d]pyrazolo[1,5-a]pyrimidines: Regioselective synthesis of a Novel Ring System, DFT-based NMR prediction, local reactivity indexes, and MEP analysis

Novel benzo[6,7]cyclohepta[1,2-d]pyrazolo[1,5-a]pyrimidines were prepared as a new ring system utilizing a regioselective protocol. A mixture of the appropriate 3,5-diamino-1H-pyrazoles and benzosuberone-based enones in ethanolic potassium hydroxide solution was heated at reflux for 5 h to produce the novel benzosuberone-fused pyrazolo[1,5-a]pyrimidines in 87–94 % yields. Both spectral data as well as elemental analyses were used to establish the structure of the novel products. Theoretical calculation of chemical shifts of NMR spectra is a powerful tool in analyzing experimental spectra for known substrates as well as elucidating the chemical structure for unknown ones. Using the DFT-GIAO approach under the B3LYP and mPW1PW91 functions, as well as a variety of basis sets, including 6–31G(d,p), 6–31+G(d), 6–311G(d), 6–311+G(d,p), 6–311++G-(d,p), and 6–311+G(2d,p), the chemical shifts of 1H- and 13C NMR in DMSO were calculated. The results that are most similar to the experimental observations are obtained from the computation of the chemical shift values under the 6–31G(d,p) or 6–31+G(d,p) basis sets and mPW1PW91 when using the multistranded approach. By identifying the preferred regions for electrophilic and nucleophilic attack, DFT-based FMO, global descriptors, local reactivity indexes, and MEP mapping were applied at the B3LYP function using the 6–31+G(d,p) basis set to provide additional insight into the regioselectivity in the desired reaction as well as the plausible mechanism for the formation of new products.

1H, 13C and 15N resonance assignments of a shark variable new antigen receptor against hyaluronan synthase.

Single domain antibody (sdAb) is only composed of a variable domain of the heavy-chain-only antibody, which is devoid of light chain and naturally occurring in camelids and cartilaginous fishes. Variable New Antigen Receptor (VNAR), a type of single domain antibody present in cartilaginous fishes such as sharks, is the smallest functional antigen-binding fragment found in nature. The unique features, including flexible paratope, high solubility and outstanding stability make VNAR a promising prospect in antibody drug development and structural biology research. However, VNAR's research has lagged behind camelid-derived sdAb, especially in the field of structural research. Here we report the 1H,15N,13C resonance assignments of a VNAR derived from the immune library of Chiloscyllium plagiosum, termed B2-3, which recognizes the hyaluronan synthase. Analysis of the backbone chemical shifts demonstrates that the secondary structure of VNAR is predominately composed of β-sheets corresponding to around 40% of the B2-3 backbone. The Cβ chemical shift values of cysteine residues, combined with mass spectrometry data, clearly shows that B2-3 contains two pairs of disulfide bonds, which is import for protein stability. The assignments will be essential for determining the high resolution solution structure of B2-3 by NMR spectroscopy.

Synthesis, QTAIM, anticancer activity analysis of pyrrole-imidazole/benzimidazole derivatives and investigation of their reactivity properties using DFT calculations and molecular docking

As part of our ongoing investigation into pyrrole derivatives, we here present the synthesis, spectroscopic characterization, QTAIM, reactivity, anticancer activity, and comparative experimental and computational analysis of pyrrole-imidazole ((3l), (3p)) and benzimidazole derivatives ((3h), (3i), (3j), (3k), (3m), (3n), (3o)). All synthesized compounds (3h-3p) have been well characterized by spectroscopic techniques (FT-IR, 1H and 13C NMR, Mass spectrometry). The experimental 1H and 13C NMR chemical shift values of synthesized pyrrole-imidazole (3l, 3p) and benzimidazole (3h-3o) derivatives have been well corroborated with computed chemical shifts. The vibrational analysis for four derivatives of pyrrole-benzimidazole (3m), (3n), (3o), and pyrrole-imidazole (3p) has the suitability for dimer formation in solid state by intermolecular heteronuclear hydrogen bonding (N–H···O) and the interaction energy of dimers are calculated to be 10.88, 11.70, 9.89 and 10.72 kcal/mol, using DFT. After basis-set superposition error (BSSE) correction, the interaction energies of dimers were found to be 11.12, 12.11, 10.13, and 11.52 kcal/mol. Estimated intermolecular H-bond in (3m-3n) compounds were found to be -13.38, -12.86, -11.02, and -11.28 kJ/mol using QTAIM. All the synthetic pyrrole-imidazole (3l, 3p) and benzimidazole (3h-3o) derivatives exhibit strong antileukemia activity in vitro against the proliferative cell line L1210 leukemia cells. A dataset of investigated compounds was subjected for molecular modelling simulation against three distinct proteins (SYK, PI3K, and BTK), which was found to be highly implicated in the favourable interaction between the compounds and their target proteins in every instance. The synthesized pyrrole-imidazole (3l, 3p) and benzimidazole (3h-3o) derivatives shown favourable interactions with their target proteins, with high activity and binding free energy values falling between 15.22 and 13.43 and -7.4 and -9.8 kcal/mol, respectively. The structure of pyrrole-imidazole (3l, 3p) and benzimidazole (3h-3o) derivatives is thoroughly examined, and several parameters are proposed here to improve their anticancer activity.

β-d-Glucopyranose – Silver+ (1:1) complex assisted aromaticity involving electron deficient X3 (X=Be, Mg) core

Seeing the frontier molecular orbitals (FMO) picture of β-d-glucopyranose–silver+ (1:1) complex ([Ag(C6H12O6)]+) reported in a recent article (Mondal, 2024) [53], we used the FMO based approach to obtain inverted sandwich like organometallic complex comprising X3 (X=Be, Mg) core, in silico. Thermodynamic feasibility of obtaining [(C6H12O6)Ag-X3-Ag(C6H12O6)] (X=Be, Mg) complexes are explored. Conceptual density functional theory (CDFT) based reactivity descriptors guide to ascertain the stability order of such complexes. By the help of natural bond orbital analysis, Wiberg bond indices (WBI), bond critical point analysis, electron density descriptors, and gradient isosurface between selected contacts, the nature of interaction between the X3 core and Ag metals are studied. FMO of the complexes further help in ascertaining the nature of binding. Energy decomposition analysis marks the interaction between X3 and Ag metals in [(C6H12O6)Ag-X3-Ag(C6H12O6)] (X=Be, Mg) as partially covalent. Negative values of nucleus independent chemical shift (NICS) at the triangular ring (X3) centres [NICS(0)] indicate aromatic property.

Synthesis and Biological Activity of New Hydrazones Based on N-Aminomorpholine.

The data on the synthesis of N-aminomorpholine hydrazones are presented. It is shown that the interaction of N-aminomorpholine with functionally substituted benzaldehydes and 4-pyridinaldehyde in isopropyl alcohol leads to the formation of corresponding hydrazones. The structure of the synthesized compounds was studied by 1H and 13C NMR spectroscopy methods, including the COSY (1H-1H), HMQC (1H-13C) and HMBC (1H-13C) methodologies. The values of chemical shifts, multiplicity, and integral intensity of 1H and 13C signals in one-dimensional NMR spectra were determined. The COSY (1H-1H), HMQC (1H-13C), and HMBC (1H-13C) results revealed homo- and heteronuclear interactions, confirming the structure of the studied compounds. The antiviral, cytotoxic, and antimicrobial activity of some synthesized hydrazones were investigated. It is shown that 2-((morpholinoimino)methyl)benzoic acid has a pronounced viral inhibitory property, comparable in its activity to commercial drugs Tamiflu and Remantadine. A docking study was performed using the influenza virus protein models (1930 Swine H1 Hemagglutinin and Neuraminidase of 1918 H1N1 strain). The potential binding sites that are complementary with 2-((morpholinoimino)methyl)benzoic acid were found.

Impact of solvents on electronic transition, molecular structure, and spectroscopy analysis of newly synthesized 3-methoxy-5-(1-phenyl-3-p-tolyl-1H-pyrazol-4-yl)-4H-1,2, 4-triazole- rheumatoid arthritis agent

Theoretical DFT calculation and Experimental analysis, such as FTIR and NMR were done on the title compound to anticipate its structural properties, frequency analysis and electronic parameters. The title compound was synthesized using ultrasound radiation. Through optimization, structural properties were found and prominent bond variables of the title compound were highlighted. Frequency analyses for all the normal modes were analyzed and compared with experimental FTIR values. MEP and ESP explain the active region of the title compound. Frontier molecular orbital pictures the electron occupations through HOMO and LUMO orbitals. Benzonitrile, benzyl alcohol, DMF, DMSO, ethanol, Trifluoroethanol, chloroform, methanol, water and gas are the solvents used in UV analysis to find out the solvation effects of the chosen compound. NMR Chemical shift values were predicted using both theoretical and experimental techniques. Optical property was also investigated and the results are compared with prototype substance. Surface properties was analyzed using Multiwfn and VMD softwares. In addition, Drug like properties reveals that title compound does not have any violation against Lipinski's rule of five. Molecular docking was also carried out.

Synthesis, Characterization and Evaluation of Antibacterial activity of Amine-Boranes

Amine-Boranes (AB) are an elite class of reagent and belongs to the Borane-Lewis family, has found extensive use in chemical synthesis. Interesting aspect of AB reagents are to display chemo selectivity among the functional groups. The present investigation highlights on the innovative, green synthesis and characterization of the three of unique AB complexes, including triethylamine-borane (aliphatic), aniline-borane (aromatic), and (aromatic substituted) N,N-dimethylaniline-borane (DMAB) under an open air condition. The 11B NMR technique was used to characterize the synthesized AB reagents. The chemical shift values obtained were in accordance with the results of previous research studies, and it's interesting to note that there is a difference in 11B-NMR chemical shift values between the borane complexes of aromatic and aliphatic amines. The antibacterial efficacy of three AB reagents has been stated for the first instance by using disc diffusion method against four bacterial strains: Escherichia coli, Salmonella typhimurium, Pseudomonas aeruginosa, and Staphylococcus aureus. When compared to other AB complexes, the DMAB reagent demonstrated significant antibacterial properties against the four different bacterial species.

Structures prediction and replica exchange molecular dynamics simulations of α-synuclein: A case study for intrinsically disordered proteins

In recent years, a variety of three-dimensional structure prediction tools, including AlphaFold2, AlphaFold3, I-TASSER, C-I-TASSER, Phyre2, ESMFold, and RoseTTAFold, have been employed in the investigation of intrinsically disordered proteins. However, a comprehensive validation of these tools specifically for intrinsically disordered proteins has yet to be conducted. In this study, we utilize AlphaFold2, AlphaFold3, I-TASSER, C-I-TASSER, Phyre2, ESMFold, and RoseTTAFold to predict the structure of a model intrinsically disordered α-synuclein protein. Additionally, extensive replica exchange molecular dynamics simulations of the intrinsically disordered protein are conducted. The resulting structures from both structure prediction tools and replica exchange molecular dynamics simulations are analyzed for radius of gyration, secondary and tertiary structure properties, as well as Cα and Hα chemical shift values. A comparison of the obtained results with experimental data reveals that replica exchange molecular dynamics simulations provide results in excellent agreement with experimental observations. However, none of the structure prediction tools utilized in this study can fully capture the structural characteristics of the model intrinsically disordered protein. This study shows that a cluster of ensembles are required for intrinsically disordered proteins. Artificial-intelligence based structure prediction tools such as AlphaFold3 and C-I-TASSER could benefit from stochastic sampling or Monte Carlo simulations for generating an ensemble of structures for intrinsically disordered proteins.