Polycyclic aromatic hydrocarbons (PAHs) are a group of emerging chemical pollutants that pose severe health challenges and toxicity to people and aquatic organisms exposed to these pollutants. This study sought to assess the types and levels of PAHs and their eco-toxicity indices in surface waters of Narok and Bomet counties of Kenya, which have witnessed an increase in charcoal-burning activities and vehicular emissions near water bodies. Sampling was done in eight regions of the two counties based on their proximity to PAH sources. Extraction of the water samples was done via a solid-phase mmethod. Seven US Environmental Protection Agency (US EPA) priority PAHs were detected. The concentrations of these PAHs varied from below the limits of detection up to 31.42 µg l −1 for dibenzo[ a,h ]anthracene. The majority of the PAHs from Narok County were pyrogenic, while those from Bomet were petrogenic based on PAH diagnostic ratios. The surface waters were significantly polluted with dibenzo[ a,h ]anthracene, with risk quotients above 1.0 in the surface waters, and were found to be hazardous, with hazard quotients above 10.0, thus indicating potential environmental risks. The findings indicate the need for stringent measures to be put in place to mitigate the risks posed by these PAHs.