Charged Patch Research Articles

Tuning charge density of chimeric antigen receptor optimizes tonic signaling and CAR-T cell fitness

Tonic signaling of chimeric antigen receptor (CAR), i.e., the spontaneous CAR activation in the absence of tumor antigen stimulation, is considered to be a pivotal event controlling CAR-T efficacy. However, the molecular mechanism underlying the spontaneous CAR signals remains elusive. Here, we unveil that positively charged patches (PCPs) on the surface of the CAR antigen-binding domain mediate CAR clustering and result in CAR tonic signaling. For CARs with high tonic signaling (e.g., GD2.CAR and CSPG4.CAR), reducing PCPs on CARs or boosting ionic strength in the culture medium during ex vivo CAR-T cell expansion minimizes spontaneous CAR activation and alleviates CAR-T cell exhaustion. In contrast, introducing PCPs into the CAR with weak tonic signaling, such as CD19.CAR, results in improved in vivo persistence and superior antitumor function. These results demonstrate that CAR tonic signaling is induced and maintained by PCP-mediated CAR clustering. Notably, the mutations we generated to alter the PCPs maintain the antigen-binding affinity and specificity of the CAR. Therefore, our findings suggest that the rational tuning of PCPs to optimize tonic signaling and in vivo fitness of CAR-T cells is a promising design strategy for the next-generation CAR.

Synthesis of patchy particles using gaseous ligands

The collective self-assembly of colloidal particles can be influenced by the composition of the suspending medium, the bulk material of the particles themselves and, importantly, by their surface chemistry. This can be inhomogeneous or patchy to give an orientational dependence to the interaction potential between the particles. These additional constraints to the energy landscape then steer the self-assembly towards configurations of fundamental or applicational interest. We present a novel approach to modify the surface chemistry of colloidal particles to give them two polar patches, using gaseous ligands. In particular, we synthesize polar inverse patchy colloids, i.e., charged particles with two (fluorescent) patches of the opposite charge on their poles. We characterize the dependence of these charges on the pH of the suspending solution.

Evaluation of preferred binding regions on ubiquitin and IgG1 FC for interacting with multimodal cation exchange resins using DEPC labeling/mass spectrometry.

There is significant interest in identifying the preferred binding domains of biological products to various chromatographic materials. In this work, we develop a biophysical technique that uses diethyl pyrocarbonate (DEPC) based covalent labeling in concert with enzymatic digestion and mass spectrometry to identify the binding patches for proteins bound to commercially available multimodal (MM) cation exchange chromatography resins. The technique compares the changes in covalent labeling of the protein in solution and in the bound state and uses the differences in this labeling to identify residues that are sterically shielded upon resin binding and, therefore, potentially involved in the resin binding process. Importantly, this approach enables the labeling of many amino acids and can be carried out over a pH range of 5.5-7.5, thus enabling the protein surface mapping at conditions of interest in MM cation exchange systems. The protocol is first developed using the model protein ubiquitin and the results indicate that lysine residues located on the front face of the protein show dramatic changes in DEPC labeling while residues present on other regions have minimal or no reductions. This indicates that the front face of ubiquitin is likely involved in resin binding. In addition, surface property maps indicate that the hypothesized front face binding region consists of overlapping positively charged and hydrophobic patches. The technique is then employed with an IgG1 FC and the results indicate that residues on the CH 2-CH 3 interface and the hinge are significantly sterically shielded upon binding to the resin. Further, these regions are again associated with significant overlap of positively charged and hydrophobic patches. On the other hand, while, residues on the CH 2 and the front face of the IgG1 FC also exhibited some changes in DEPC labeling upon binding, these regions have less distinct charged and hydrophobic patches. Importantly, the hypothesized binding patches identified for both ubiquitin and FC using this approach are shown to be consistent with previously reported NMR studies. In contrast to NMR, this new approach enables the identification of preferred binding regions without the need for isotopically labeled proteins or chemical shift assignments. The technique developed in this work sets the stage for the evaluation of the binding domains of a wide range of biological products to chromatographic surfaces, with important implications for designing biomolecules with improved biomanufacturability properties.

Physical Factors Governing the Shape of the Miram Curve Knee in Thermionic Emission

In a current density versus temperature (J-T) (Miram) curve in thermionic electron emission, experimental measurements demonstrate there is a smooth transition between the exponential region and the saturated emission regions, which is sometimes referred to as the "roll-off" or "Miram curve knee". The shape of the Miram curve knee is an important figure of merit for thermionic vacuum cathodes. Specifically, cathodes with a sharp Miram curve knee at low temperature with a flat saturated emission current are typically preferred. Our previous work on modeling nonuniform thermionic emission revealed that the space charge effect and patch field effect are key pieces of physics which impact the shape of the Miram curve knee. This work provides a more complete understanding of the physical factors connecting these physical effects and their relative impact on the shape of the knee, including the smoothness, the temperature, and the flatness of the saturated emission current density. For our analyses, we use a periodic, equal-width striped ("zebra crossing") work function distribution as a model system and illustrate how the space charge and patch field effects restrict the emission current density near the Miram curve knee. The results indicate there are three main physical parameters which significantly impact the shape of the Miram curve. Such physical knowledge directly connects the patch size, work function values, anode-cathode voltage, and anode-cathode gap distance to the shape of the Miram curve, providing new understanding and a guide to the design of thermionic cathodes used as electron sources in vacuum electronic devices (VEDs).

Cationic Pullulan Derivatives Based Flocculants for Removal of Some Metal Oxides from Simulated Wastewater

Modified polysaccharides have been increasingly used as flocculants in wastewater treatment due to their non-toxicity, low price, biodegradability, etc. However, the pullulan derivatives are less used in wastewater purification processes. Therefore, this article presents some data regarding FeO and TiO2 particle removal from model suspensions by some pullulan derivatives with pendant quaternary ammonium salt groups, trimethylammonium propyl carbamate chloride (TMAPx-P). The influence of the polymer ionic content, dose, and initial solution concentration as well as of the dispersion pH and composition (metal oxide content, salts, and kaolin) on the separation efficacy were considered. UV-Vis spectroscopy measurements have shown a very good removal efficacy of TMAPx-P for the FeO particles (around 95% and more), irrespective of the polymer and suspension characteristics; a lower clarification of the TiO2 particles suspension (removal efficiency between 68% and 75%) was noticed. Both the zeta potential and the particle aggregates size measurements revealed the charge patch as the main mechanism which governs the metal oxide removal process. The surface morphology analysis/EDX data provided supplementary evidence regarding the separation process. A good removal efficiency (90%) of the pullulan derivatives/FeO flocs for the Bordeaux mixture particles from simulated wastewater was found.

Parametric and kinetic studies of activated sludge dewatering by cationic chitosan-like bioflocculant BF01314 produced from Citrobacter youngae

Bacterial strains belonging to Citrobacter spp. were reported to produce polysaccharides consisting of N-acetylglucosamine and glucosamine like chitosan, with high flocculation activity. In this work, the flocculation dewatering performance of activated sludge conditioned by a novel cationic chitosan-like bioflocculant (BF) named BF01314, produced from Citrobacter youngae GTC 01314, was evaluated under the influences of flocculant dosage, pH, and temperature. At BF dosage as low as 0.5 kg/t DS, the sludge dewaterability was significantly enhanced in comparison to the raw (untreated) sludge, featuring well-flocculated characteristic (reduction in CST from 22.0 s to 9.4 s) and good sludge filterability with reduced resistance (reduction in SRF by one order from 7.42 × 1011 to 9.59 × 1010 m/kg) and increased compactness of sludge (increase in CSC from 15.2 to 23.2%). Besides, the BF demonstrated comparable high sludge dewatering performance within the pH range between 2 and 8, and temperature range between 25 °C and 80 °C. Comparison between the BF, the pristine chitosan and the commercial cationic copolymer MF 7861 demonstrated equivalent performance with enhanced dewaterability at the dosage between 2.0 and 3.0 kg/t DS. Besides, the BF demonstrated strong flocculation activity (>99%) when added to the sludge suspension using moderate to high flocculation speeds (100–200 rpm) with at least 3-min mixing time. The BF's reaction in sludge flocculation was best fitted with a pseudo first-order kinetic model. Electrostatic charge patching and polymer bridging mechanisms are believed to be the dominant mechanistic phenomena during the BF's sludge conditioning process (coagulation-flocculation).

Characterization of the pH response of disordered tubulin tails.

Microtubules, formed by the polymerization of alpha and beta tubulin heterodimers, play an essential role in cell division and motility. The disordered C-terminal tails of each tubulin monomer are major sites of tubulin regulation and, despite being flexible, appear to regulate microtubule dynamics and tubulin interactions with its binding partners. Across species and isoforms, there is a preponderance of acidic amino acids in the C terminal tails, primarily present in polyglutamate tracts. We postulated that these negatively charged patches may lend the tail sensitivity to various protonation states as might be experienced under cellular stress conditions. Using nuclear magnetic resonance (NMR) spectroscopy, an ideal tool to probe the dynamics and properties of small, disordered regions such as the C-terminal tubulin tails, we probed the pH response of alpha and beta tubulin tail peptides from different species. We used point mutations and truncations within the charged regions to probe the robustness of the pH response of these disordered regions. Our results indicate there is a dynamic and attested effect from changes in pH throughout the C-terminal tail of tubulin monomers.

Crystal Structure of the SH3 Domain of ASAP1 in Complex with the Proline Rich Motif (PRM) of MICAL1 Reveals a Unique SH3/PRM Interaction Mode

SH3 domains are common protein binding modules. The target sequence of SH3 domains is usually a proline-rich motif (PRM) containing a minimal "PxxP" sequence. The mechanism of how different SH3 domains specifically choose their targets from vast PxxP-containing sequences is still not very clear, as many reported SH3/PRM interactions are weak and promiscuous. Here, we identified the binding of the SH3 domain of ASAP1 to the PRM of MICAL1 with a sub-μM binding affinity, and determined the crystal structure of ASAP1-SH3 and MICAL1-PRM complex. Our structural and biochemical analyses revealed that the target-binding pocket of ASAP1-SH3 contains two negatively charged patches to recognize the "xPx + Px+" sequence in MICAL1-PRM and consequently strengthen the interaction, differing from the typical SH3/PRM interaction. This unique PRM-binding pocket is also found in the SH3 domains of GTPase Regulator associated with focal adhesion kinase (GRAF) and Src kinase associated phosphoprotein 1 (SKAP1), which we named SH3AGS. In addition, we searched the Swiss-Prot database and found ~130 proteins with the SH3AGS-binding PRM in silico. Finally, gene ontology analysis suggests that the strong interaction between the SH3AGS-containing proteins and their targets may play roles in actin cytoskeleton regulation and vesicle trafficking.

Shape control of deformable charge-patterned nanoparticles.

Deformable nanoparticles (NPs) offer unprecedented opportunities as dynamic building blocks that can spontaneously reconfigure during assembly in response to environmental cues. Designing reconfigurable materials based on deformable NPs hinges on an understanding of the shapes that can be engineered in these NPs. We solve for the low-energy shapes of charge-patterned deformable NPs by using molecular dynamics-based simulated annealing to minimize a coarse-grained model Hamiltonian characterized with NP elastic and electrostatic energies subject to a volume constraint. We show that deformable spherical NPs of radius 50nm whose surface is tailored with octahedrally distributed charged patches and double-cap charged patches adapt their shape differently in response to changes in surface charge coverage and ionic strength. We find shape transitions to rounded octahedra, faceted octahedra, faceted bowls, oblate spheroids, spherocylinders, dented beans, and dimpled rounded bowls. We demonstrate that similar shape transitions can be achieved in deformable NPs of different sizes. The effects of counterion condensation on the free-energetic drive associated with the observed deformations are examined via Manning model calculations that utilize simulation-derived estimates for the NP Coulomb energy under salt-free conditions. The charge-pattern-based shape control of deformable NPs has implications for the design of responsive nanocontainers and for assembling reconfigurable materials whose functionality hinges on the shape-shifting properties of their nanoscale building blocks.

In-Cell Chemical Crosslinking Identifies Hotspots for SQSTM-1/p62-IκBα Interaction That Underscore a Critical Role of p62 in Limiting NF-κB Activation Through IκBα Stabilization

We have previously documented that in liver cells, the multifunctional protein scaffold p62/SQSTM1 is closely associated with IκBα, an inhibitor of the transcriptional activator NF-κB. Such an intimate p62-IκBα association we now document leads to a marked 18-fold proteolytic IκBα-stabilization, enabling its nuclear entry and termination of the NF-κB–activation cycle. In p62−/−-cells, such termination is abrogated resulting in the nuclear persistence and prolonged activation of NF-κB following inflammatory stimuli. Utilizing various approaches both classic (structural deletion, site-directed mutagenesis) as well as novel (in-cell chemical crosslinking), coupled with proteomic analyses, we have defined the precise structural hotspots of p62-IκBα association. Accordingly, we have identified such IκBα hotspots to reside around N-terminal (K38, K47, and K67) and C-terminal (K238/C239) residues in its fifth ankyrin repeat domain. These sites interact with two hotspots in p62: One in its PB-1 subdomain around K13, and the other comprised of a positively charged patch (R183/R186/K187/K189) between its ZZ- and TB-subdomains. APEX proximity analyses upon IκBα-cotransfection of cells with and without p62 have enabled the characterization of the p62 influence on IκBα–protein-protein interactions. Interestingly, consistent with p62’s capacity to proteolytically stabilize IκBα, its presence greatly impaired IκBα′s interactions with various 20S/26S proteasomal subunits. Furthermore, consistent with p62 interaction with IκBα on an interface opposite to that of its NF-κB–interacting interface, p62 failed to significantly affect IκBα–NF-κB interactions. These collective findings together with the known dynamic p62 nucleocytoplasmic shuttling leads us to speculate that it may be involved in “piggy-back” nuclear transport of IκBα following its NF-κB–elicited transcriptional activation and de novo synthesis, required for termination of the NF-κB–activation cycle. Consequently, mice carrying a liver-specific deletion of p62-residues 68 to 252 reveal age-dependent–enhanced liver inflammation. Our findings reveal yet another mode of p62-mediated pathophysiologically relevant regulation of NF-κB.

LilrB3 is a putative cell surface receptor of APOE4.

The three isoforms of apolipoprotein E (APOE2, APOE3, and APOE4) only differ in two amino acid positions but exert quite different immunomodulatory effects. The underlying mechanism of such APOE isoform dependence remains enigmatic. Here we demonstrate that APOE4, but not APOE2, specifically interacts with the leukocyte immunoglobulin-like receptor B3 (LilrB3). Two discrete immunoglobin-like domains of the LilrB3 extracellular domain (ECD) recognize a positively charged surface patch on the N-terminal domain (NTD) of APOE4. The atomic structure reveals how two APOE4 molecules specifically engage two LilrB3 molecules, bringing their intracellular signaling motifs into close proximity through formation of a hetero-tetrameric complex. Consistent with our biochemical and structural analyses, APOE4, but not APOE2, activates human microglia cells (HMC3) into a pro-inflammatory state in a LilrB3-dependent manner. Together, our study identifies LilrB3 as a putative immune cell surface receptor for APOE4, but not APOE2, and may have implications for understanding the biological functions as well as disease relevance of the APOE isoforms.

Effect of Double Mutation (L452R and E484Q) on the Binding Affinity of Monoclonal Antibodies (mAbs) against the RBD-A Target for Vaccine Development.

The COVID-19 pandemic, caused by SARS-CoV-2, emerges as a global health problem, as the viral genome is evolving rapidly to form several variants. Advancement and progress in the development of effective vaccines and neutralizing monoclonal antibodies are promising to combat viral infections. In the current scenario, several lineages containing "co-mutations" in the receptor-binding domain (RBD) region of the spike (S) protein are imposing new challenges. Co-occurrence of some co-mutations includes delta (L452R/T478K), kappa (L452R/E484Q), and a common mutation in both beta and gamma variants (E484K/N501Y). The effect of co-mutants (L452R/E484Q) on human angiotensin-converting enzyme 2 (hACE2) binding has already been elucidated. Here, for the first time, we investigated the role of these RBD co-mutations (L452R/E484Q) on the binding affinity of mAbs by adopting molecular dynamics (MD) simulation and free-energy binding estimation. The results obtained from our study suggest that the structural and dynamic changes introduced by these co-mutations reduce the binding affinity of the viral S protein to monoclonal antibodies (mAbs). The structural changes imposed by L452R create a charged patch near the interfacial surface that alters the affinity towards mAbs. In E484Q mutation, polar negatively charged E484 helps in the formation of electrostatic interaction, while the neutrally charged Q residue affects the interaction by forming repulsive forces. MD simulations along with molecular mechanics-generalized Born surface area (MMGBSA) studies revealed that the REGN 10933, BD-368-2, and S2M11 complexes have reduced binding affinity towards the double-mutant RBD. This indicates that their mutant (MT) structures have a stronger ability to escape from most antibodies than the wild type (WT). However, EY6A Ab showed higher affinity towards the double MT-RBD complex as compared to the WT. However, no significant effect of the per-residue contribution of double-mutated residues was observed, as this mAb does not interact with the region harboring L452 and E484 residues.

The surface charge decay: A theoretical and experimental analysis

The ability to retain localized charges at the surface or interface of dielectric materials is a universal property that applies to many different fields such as tribocharging, charge nanopatterning, nanoxerography, etc. Once the surface is charged, its stability and subsequent discharging rate will determine the potential applications of a given system. This decay rate is properly defined by the macroscopic equations which depend on dielectric constants and conductivities of the two media. Here, we derive the equations to model the decay of charge distributions localized at the surface/interface of materials and solve them avoiding additional approximations made so far. Addressing the problem in the Fourier space, we arrive to a compact generic equation which provides a useful tool to determine both the bulk and surface conductivities of a material. Furthermore, we show that Kelvin Probe Force Microscopy (KPFM) is a particularly suited method to exploit this tool. Monitoring the charge decay of previously injected charge patches on silicon dioxide (SiO2), together with an appropriated data analysis, we verify the behavior predicted by our equations. This allows us to characterize the surface and bulk conductivities of SiO2 layers as well as its dependence with the relative humidity.

Biomolecular Complexation on the "Wrong Side": A Case Study of the Influence of Salts and Sugars on the Interactions between Bovine Serum Albumin and Sodium Polystyrene Sulfonate.

In the protein purification, drug delivery, food industry, and biotechnological applications involving protein–polyelectrolyte complexation, proper selection of co-solutes and solution conditions plays a crucial role. The onset of (bio)macromolecular complexation occurs even on the so-called “wrong side” of the protein isoionic point where both the protein and the polyelectrolyte are net like-charged. To gain mechanistic insights into the modulatory role of salts (NaCl, NaBr, and NaI) and sugars (sucrose and sucralose) in protein–polyelectrolyte complexation under such conditions, interaction between bovine serum albumin (BSA) and sodium polystyrene sulfonate (NaPSS) at pH = 8.0 was studied by a combination of isothermal titration calorimetry, fluorescence spectroscopy, circular dichroism, and thermodynamic modeling. The BSA–NaPSS complexation proceeds by two binding processes (first, formation of intrapolymer complexes and then formation of interpolymer complexes), both driven by favorable electrostatic interactions between the negatively charged sulfonic groups (−SO3–) of NaPSS and positively charged patches on the BSA surface. Two such positive patches were identified, each responsible for one of the two binding processes. The presence of salts screened both short-range attractive and long-range repulsive electrostatic interactions between both macromolecules, resulting in a nonmonotonic dependence of the binding affinity on the total ionic strength for both binding processes. In addition, distinct anion-specific effects were observed (NaCl < NaBr < NaI). The effect of sugars was less pronounced: sucrose had no effect on the complexation, but its chlorinated analogue, sucralose, promoted it slightly due to the screening of long-range repulsive electrostatic interactions between BSA and NaPSS. Although short-range non-electrostatic interactions are frequently mentioned in the literature in relation to BSA or NaPSS, we found that the main driving force of complexation on the “wrong side” are electrostatic interactions.

Crystal Structure of the Recombination Mediator Protein RecO from Campylobacter jejuni and Its Interaction with DNA and a Zinc Ion.

Homologous recombination is involved in repairing DNA damage, contributing to maintaining the integrity and stability of viral and cellular genomes. In bacteria, the recombination mediator proteins RecO and RecR are required to load the RecA recombinase on ssDNA for homologous recombination. To structurally and functionally characterize RecO, we determined the crystal structure of RecO from Campylobacter jejuni (cjRecO) at a 1.8 Å resolution and biochemically assessed its capacity to interact with DNA and a metal ion. cjRecO folds into a curved rod-like structure that consists of an N-terminal domain (NTD), C-terminal domain (CTD), and Zn2+-binding domain (ZnD). The ZnD at the end of the rod-like structure coordinates three cysteine residues and one histidine residue to accommodate a Zn2+ ion. Based on an extensive comparative analysis of RecO structures and sequences, we propose that the Zn2+-binding consensus sequence of RecO is CxxC…C/HxxC/H/D. The interaction with Zn2+ is indispensable for the protein stability of cjRecO but does not seem to be required for the recombination mediator function. cjRecO also interacts with ssDNA as part of its biological function, potentially using the positively charged patch in the NTD and CTD. However, cjRecO displays a low ssDNA-binding affinity, suggesting that cjRecO requires RecR to efficiently recognize ssDNA for homologous recombination.

One-pot production of a graft copolymer of cationic starch and cationic polyacrylamide applicable as flocculant for wastewater treatment

A newly developed, high-performance, and environmentally friendly flocculant, i.e., a graft copolymer of cationic starch and cationic polyacrylamide (SC-CPAM), is synthesized via a single-step pathway in which the cationic agent is incorporated onto the starch backbone and into the polyacrylamide grafted branch simultaneously. One-pot preparation method is quick, reproducible, and easily scalable, which yields high-quality products with better flocculation performance than conventional cationic starch (SC) and starch-graft-polyacrylamide (S-PAM). The synthesized samples are characterized by physicochemical techniques, namely Fourier Transform Infrared Spectroscopy (FTIR), elemental analysis, H1 Nuclear Magnetic Resonance (H1NMR) Spectroscopy, Zeta Potential (ZP), and Dynamic light scattering (DLS). The application as a flocculant for wastewater treatment is investigated by flocculation of kaolinite suspension and analysis of turbidity (UV-Vis and NTU), ZP, and floc size in neutral pH. A high clarification of 97.8%, low turbidity of 1.97 NTU, and large floc size of 136 µm, obtained by SC-CPAM, are believed to result from dual flocculation mechanisms, i.e., polymer charge patch and particle bridging, enabled by the cationic high molecular weight branched bio-based flocculant for wastewater purification applications.

Modulating Functionality of Starch-Based Patchy Particles by Manipulating Architecture and Environmental Factors.

Starch as a food-grade thickener has been commonly used in food products to modulate textural properties. Improving viscosity-enhancing ability, so as to be able to use less starch for the same texture, has been considered as an approach to reduce the dietary consumption of carbohydrates. We have positively charged amaranth starch (∼1 μm) and negatively charged corn starch (>10 μm) and physically fused the particles together to create a starch with a heterogeneous pattern. This starch has a negatively charged main body, due to the larger corn particles, and positively charged patches from the amaranth starch. These patchy particles self-assembled through electrostatic interactions into a shear-reversible thickener. The impact of patchiness and charge density on material functionality was investigated. The degree of patchiness was controlled by manipulating the ratio between the two starches, and results showed that viscosity was reduced when the patchiness was higher. With the same patchy area, a higher charge density did not contribute to higher water-holding capacity. The more charged particles were able to enhance the viscosity, however, due to the stronger interparticle electrostatic interaction. The effects of environmental factors including pH level and ionic strength were also investigated, and the results showed that at extreme pH levels, or in the presence of Na+ or Ca2+, the charges on the starch particles were screened, and this inhibited interaction and reduced viscosity. The present work demonstrates that the texture of starch slurries can be fine-tuned by manipulating the degree of patchiness and the charge density of patchy particles. It also evaluates the application potential in food products with different pH levels and ionic strengths.

Molecular and functional interactions of alpha-synuclein with Rab3a

Alpha-synuclein (a-Syn) is a presynaptic protein, the misfolding of which is associated with Parkinson’s disease. Rab GTPases are small guanine nucleotide binding proteins that play key roles in vesicle trafficking and have been associated with a-Syn function and dysfunction. a-Syn is enriched on synaptic vesicles, where it has been reported to interact with GTP-bound Rab3a, a master regulator of synaptic vesicle trafficking. a-Syn is known to bind weakly to Rab8a in solution via a positively charged patch, but the physiological implications of such interactions have not been explored. Here, we investigate direct interactions between a-Syn and Rab3a in solution and on lipid membranes using NMR spectroscopy. We find that the C terminus of a-Syn interacts with Rab3a in a manner similar to its previously reported interaction with Rab8a. While weak in solution, we demonstrate that this interaction becomes stronger when the proteins are bound to a membrane surface. The Rab3a binding site for a-Syn is similar to the surface that contacts the Rab3a effector rabphilin-3A, which modulates the enzymatic activity of Rab3a. Accordingly, we show that a-Syn inhibits GTP hydrolysis by Rab3a and that inhibition is more potent on the membrane surface, suggesting that their interaction may be functionally relevant. Finally, we show that phosphorylation of a-Syn residue Ser 129, a modification associated with Parkinson’s disease pathology, enhances its interactions with Rab3a and increases its ability to inhibit Rab3a GTP hydrolysis. These results represent the first observation of a functional role for synuclein-Rab interactions and for a-Syn Ser 129 phosphorylation.

Synthesis and characterization of a cationic dextran-based flocculant and its application in bacterial sedimentation

As a promising material in the field of wastewater treatment, polysaccharide-modified flocculants have received increasing attention due to their environmental friendliness. In this study, an efficient and environmentally friendly flocculant was synthesized using a graft copolymerization reaction of dextran and [2-(methacryloyloxy) ethyl] trimethylammonium chloride (METAC). The reaction conditions were optimized at 3 mol/mol METAC/dextran, 60 g/L dextran concentration, 3 h reaction time, 60 ℃ and pH 7. The results of elemental analysis, Fourier transform infrared (FTIR) spectroscopy, NMR hydrogen spectroscopy (1H NMR), X-ray diffraction (XRD), field-emission scanning electron microscopy (FESEM), thermogravimetric analysis (TGA) and viscosity measurement confirmed that the graft copolymerization reaction was successful. When flocculating a kaolin suspension used as synthetic wastewater, the flocculant showed effective flocculation performance at a low dosage. The results indicate that this cationic polysaccharide flocculant removed 98.2% of the kaolin solid suspended particles. Investigation of the flocculation mechanism showed that the flocculation process consisted of charge neutralization, charge patching and adsorption bridging mechanisms. When flocculating an E. coli culture medium, this flocculant showed high efficiency under acidic, neutral and alkaline conditions. In addition, this flocculant can be easily biodegraded by the enzymatic method. As a biomaterial, this cationic dextran derivative can contribute to future treatment of industrial wastewater and harvesting of microbial cells.

Covalent Labeling-Mass Spectrometry Provides a Molecular Understanding of Noncovalent Polymer-Protein Complexation.

The delivery of functional proteins to the intracellular space offers tremendous advantages for the development of new therapeutics but is limited by the passage of these large polar biomacromolecules through the cell membrane. Noncovalent polymer-protein binding that is driven by strong carrier-cargo interactions, including electrostatics and hydrophobicity, has previously been explored in the context of delivery of functional proteins. Appropriately designed polymer-based carriers can take advantage of the heterogeneous surface of protein cargoes, where multiple types of physical binding interactions with polymers can occur. Traditional methods of assessing polymer-protein binding, including dynamic light scattering, circular dichroism spectroscopy, and fluorescence-based assays, are useful in the study of new polymer-based carriers but face a number of limitations. We implement for the first time the method of covalent labeling-mass spectrometry (CL-MS) to probe intermolecular surface interactions within noncovalent polymer-protein complexes. We demonstrate the utility of CL-MS for establishing binding of an amphiphilic block copolymer to negatively charged and hydrophobic surface patches of a model protein, superfolder green fluorescent protein (sfGFP), using diethylpyrocarbonate as a pseudo-specific labeling reagent. In addition, we utilize this method to explore differences at the intermolecular surface as the ratio of polymer to protein increases, particularly in the context of defining effective protein delivery regimes. By promoting an understanding of the intermolecular interactions in polymer-protein binding and identifying sites where polymers bind to protein surfaces, noncovalent polymer carriers can be more effectively designed for protein delivery applications.