Characterization Of Strains Research Articles

Multi-functional properties of lactic acid bacteria strains derived from canine feces.

Probiotics, especially Lactic Acid Bacteria (LAB), can promote the health of host animals in a variety of ways, such as regulating intestinal flora and stimulating the host's immune system. In this study, 206 LAB strains were isolated from 48 canine fecal samples. Eleven LAB strains were selected based on growth performance, acid and bile salt resistance. The 11 candidates underwent comprehensive evaluation for probiotic properties, including antipathogenic activity, adhesion, safety, antioxidant capacity, and metabolites. The results of the antipathogenic activity tests showed that 11 LAB strains exhibited strong inhibitory effect and co-aggregation ability against four target pathogens (E. coli, Staphylococcus aureus, Salmonella braenderup, and Pseudomonas aeruginosa). The results of the adhesion test showed that the 11 LAB strains had high cell surface hydrophobicity, self-aggregation ability, biofilm-forming ability and adhesion ability to the Caco-2 cells. Among them, Lactobacillus acidophilus (L177) showed strong activity in various adhesion experiments. Safety tests showed that 11 LAB strains are sensitive to most antibiotics, with L102, L171, and L177 having the highest sensitivity rate at 85.71%, and no hemolysis occurred in all strains. Antioxidant test results showed that all strains showed good H2O2 tolerance, high scavenging capacity for 1, 1-diphenyl-2-trinitrophenylhydrazine (DPPH) and hydroxyl (OH-). In addition, 11 LAB strains can produce high levels of metabolites including exopolysaccharide (EPS), γ-aminobutyric acid (GABA), and bile salt hydrolase (BSH). This study provides a thorough characterization of canine-derived LAB strains, highlighting their multifunctional potential as probiotics. The diverse capabilities of the strains make them promising candidates for canine dietary supplements, offering a holistic approach to canine health. Further research should validate their efficacy in vivo to ensure their practical application.

Durability Studies and Stress Strain Characteristics of hooked end steel fiber reinforced ambient cured geopolymer concrete

Abstract For conventional concrete, the use of fibers has proven to improve the strength properties of the material. However, in the case of ambient cured geopolymer concrete, there are limited studies that explore the application of fibers, in particular, the use of hooked end steel fibers. Further, it is important to study the durability properties of geopolymer concrete with fibers, since it will influence the service life of the structures in practice. Therefore, in the present study, fiber-reinforced geopolymer concrete was synthesized using fly ash, GGBS, hooked end steel fibers, and alkaline solution made with Na2SiO3 and NaOH. The percentage of steel fibers varied in the range of 0.5% to 2% with an increment of 0.5% by volume fraction of the binder. The precursor materials were characterized using techniques such as X-ray fluorescence (XRF), X-ray diffraction (XRD), and scanning electron microscope (SEM). Durability studies like water absorption, drying shrinkage, sulphate attack were studied. In addition, the elastic constants were determined through stress strain behaviour of geopolymer concrete in uniaxial compression. The results of the experimental study showed that the addition of hooked end steel fibers influences the strength of geopolymer concrete up to an optimal percentage, which was found to be 1%. Furthermore, in terms of durability properties, the addition of fibers exhibited better results in terms of resistance to water absorption and chemical attack, and this was validated by the microstructural studies, where the specimens with hooked end steel fibers revealed much denser hardened geopolymer matrix when compared to the mixes without fibers.

Identification and nutritional characterization of a wild Calocybe indica strain from Anantapur forest

Identification and nutritional characterization of a wild Calocybe indica strain from Anantapur forest

Modified constitutive models and cutting finite element simulation of Ti-6Al-4V alloy at cryogenic

Mastering the high strain characteristics at cryogenics and constructing an accurate constitutive model are critical for establishing a cryogenic cutting simulation of Ti-6Al-4V alloy. The traditional constitutive model is inadequate for accounting for high and cryogenic conditions. In this paper, cryogenic split Hopkinson pressure bar (SHPB) experiments are conducted, specifically for Ti-6Al-4V alloy, to develop a modified Johnson–Cook (J–C) constitutive model that incorporates the cryogenic effect. A coupled two-dimensional orthogonal finite element simulation involving temperature displacement was conducted for the cryogenic cutting of Ti-6Al-4V alloy. This simulation was performed using ABAQUS, based on a modified J–C constitutive model subroutine. It was observed that the smallest discrepancy between the simulation results and the data from ice-fixed milling experiments was just 2.12%. The modified J–C constitutive model is more adept at simulating the chip morphology under cryogenic conditions. It was also found that cryogenic machining enhances the distribution of temperature and stress within the chip. For every 5°C reduction in processing temperature, the tool temperature diminishes by more than 2%.

Axial local bearing behavior of circular reinforced concrete filled steel tube stub columns

In this work, the axial local compression of circular reinforced concrete-filled steel tube (CRCFT) stub columns is studied. Sixteen specimens, including one circular reinforced concrete stub column (CRCC) specimen and fifteen CRCFT specimens, were prepared, considering different variables, such as the local compression area ratio β, sectional steel ratio α, volume stirrup ratio ρv, longitudinal reinforcement ratio ρ, and concrete strength fc. The axial local compression of specimens were experimentally investigated in terms of the damage process, failure mode, load-displacement relationship, ultimate bearing capacity, stiffness, deformation capacity, and strain characteristic. The finite element model of the CRCFT was also developed and validated. The parametric analysis of the local compression area ratio β, sectional steel ratio α, and volume stirrup ratio ρv facilitated the further investigation of the axial local compression behavior of CRCFT. The results showed steel tube buckling and concrete shear failure exhibited by CRCFT specimens. With the increasing local compression area ratio β, the ultimate bearing capacity reduced by 3.6–47.9 %, whereas the local compression strength improvement coefficient βcl increased by 11.8–273.9 %. With the increase in section steel ratio α and volume stirrup ratio ρv, the ultimate bearing capacity, stiffness, and deformation capacity were improved. Longitudinal reinforcement ratio ρ and the concrete strength fc also influenced the stiffness of CRCFT specimens. A simplified calculation method for the ultimate bearing capacity of CRCFT specimens was also presented.

A paradigm for the contextual safety assessment of agricultural microbes: a closer look at Klebsiella variicola

Adopting a risk assessment paradigm that is contextualized and strain-specific will be critical to enabling the continued development and safe use of microbes, particularly bacteria, in numerous industries and applications. An overly simplistic approach of labeling bacterial species as either harmful or beneficial is ill-suited for the complexities of their interactions with hosts and other microbes, where the lines between friend, foe, and innocent bystander are often unclear. Many such nuanced relationships have been described in human microbiome studies, illustrating the inherent challenges of defining bacterial safety. Any effective risk assessment framework must take into account bacterial niche and environment, fitness, host health, route and extent of exposure, and strain characterization. Klebsiella variicola, a diazotrophic soil bacterium isolated around the world, has been the subject of increasing interest on both environmental and clinical fronts, and has been used commercially as a biofertilizer on millions of farm acres. Here we review its population structure, relevance in clinical and environmental settings, and use as a biofertilizer in light of the risk assessment framework described.

Comparison of mutations in human parainfluenza viruses during passage in primary human bronchial/tracheal epithelial air-liquid interface cultures and cell lines.

Adaptation of viruses to cultured cells can increase the risk of misinterpretation in virological characterization of clinical isolates. In human parainfluenza virus (HPIV) 3, it has been reported that the human airway epithelial and lung organoid models are preferable for the study of viral characteristics of clinical strains without mutations. Therefore, we analyzed clinical isolates of all four HPIVs for the occurrence of mutations after five laboratory passages in human bronchial/tracheal epithelial cell air-liquid interface (HBTEC-ALI) or conventional culture. We found a high risk of hemagglutinin-neuraminidase mutagenesis in all four HPIVs in conventional cultured cells. In addition, in HPIV1 and HPIV2, mutations of the large protein were also more frequent in conventional cultured cells than in HBTEC-ALI culture. HBTEC-ALI culture was useful for maintaining the original sequence and characteristics of clinical isolates in all four HPIVs. The present study contributes to the understanding of HPIV pathogenesis and antiviral strategies.

Strain Measurement for Composite Materials During Mechanical Testing Based on Fiber Bragg Grating Monitoring

Composite materials are widely used as repair materials in the oil and gas sector, particularly for vessels, piping, and pipelines. Inspection and monitoring of these composite repairs is a critical aspect of ensuring their integrity and long-term performance. The reason being that failure of composite repairs may lead to loss of production and incur additional costs for re-repair or equipment replacement. Conventionally, a visual inspection is generally performed to observe any irregularities on the external surface of the composite repairs. This will usually be followed by a series of Non-destructive Tests (NDT) to identify the extent of the damage. However, these NDT methods, merely allowing off-line testing in a local manner with complicated and heavy equipment, require extensive and time-consuming labour. Structural Health Monitoring (SHM) based on Fibre Bragg Grating (FBG) that utilizes strain-based signals is one of the best options for monitoring the damage mechanism in composite due to its unique advantages of light weight, high stability and reliability, a long-life cycle, and the ability to capture the online reading. In this paper, the application of the FBG monitoring approach was used to examine the strain characteristics of composite materials based on mechanical tests (tensile and flexural). Three types of samples were prepared to simulate the type of damage mechanism: healthy, delamination, and disbondment. Based on the results, it was shown that the FBG sensor has potential for detecting and distinguishing the types of failure mechanisms in composites, including cracks, delamination, and disbondment. Hence, it was suggested that the FBG sensor technology could be used for site deployment in industry.

Characterization of Collaborative Cross mouse founder strain CAST/EiJ as a novel model for lethal COVID-19.

Mutations in SARS-CoV-2 variants of concern (VOCs) have expanded the viral host range beyond primates, and a limited range of other mammals, to mice, affording the opportunity to exploit genetically diverse mouse panels to model the broad range of responses to infection in patient populations. Here we surveyed responses to VOC infection in genetically diverse Collaborative Cross (CC) founder strains. Infection of wild-derived CC founder strains produced a broad range of viral burden, disease susceptibility and survival, whereas most other strains were resistant to disease despite measurable lung viral titers. In particular, CAST/EiJ, a wild-derived strain, developed high lung viral burdens, more severe lung pathology than seen in other CC strains, and a dysregulated cytokine profile resulting in morbidity and mortality. These inbred mouse strains may serve as a valuable platform to evaluate therapeutic countermeasures against severe COVID-19 and other coronavirus pandemics in the future.

Characterisation of European Field Goat Prion Isolates in Ovine PrP Overexpressing Transgenic Mice (Tgshp IX) Reveals Distinct Prion Strains.

After the detection of bovine spongiform encephalopathy (BSE), and a zoonotic transmissible spongiform encephalopathy (TSE) caused by the pathological prion protein (PrPSc) in two goats, the investigation of goat prions became of greater interest. Therefore, a broad collection of European goat TSE isolates, including atypical scrapie, CH1641 and goat BSE as reference prion strains were biochemically characterised and subsequently inoculated into seven rodent models for further analysis (already published results of this comprehensive study are reviewed here for comparative reasons). We report here the histopathological and immunohistochemical data of this goat TSE panel, obtained after the first passage in Tgshp IX (tg-shARQ) mice, which overexpress the ovine prion protein. In addition to the clear-cut discrimination of all reference prion strains from the classical scrapie (CS) isolates, we were further able to determine three categories of CS strains. The investigation further indicates the occurrence of sub-strains that slightly resemble distant TSE strains, such as BSE or CH1641, reinforcing the theory that CS is not a single strain but a mixture of sub-strains, existing at varying extents in one isolate. This study further proved that Tgshp IX is a potent and reliable tool for the in-depth characterisation of prion strains.

Isolation and characterization of mercury and multidrug-resistant Citrobacter freundii strains from tannery effluents in Kolkata, India.

Mercury (Hg) is one of the most potent toxic heavy metals that distresses livestock, humans, and ecological health. Owing to uncontrolled exposure to untreated tannery industrial effluents, metals such as Hg are increasing in nature and are, therefore, becoming a global concern. As a result, understanding the thriving microflora in that severe condition and their characteristics becomes immensely important. During the course of this study, two Hg-resistant bacteria were isolated from tannery wastewater effluents from leather factories in Kolkata, India, which were able to tolerate 2.211 × 10- 3 M (600µg/ml) Hg. 16S rDNA analysis revealed strong sequence homology with Citrobacter freundii, were named as BNC22A and BNC22C for this study. In addition they showed high tolerance to nickel (Ni) and Chromium (Cr) at 6.31 × 10- 3 M (1500µg/ml) and 6.792 × 10- 3 M (2000µg/ml) respectively. However, both the isolates were sensitive to arsenic (As) and cadmium (Cd). Furthermore, their antibiotic sensitivity profiles reveal a concerning trend towards resistance to multiple drugs. Overuse and misuse of antibiotics in healthcare systems and agriculture has been identified as two of the main reasons for the decline in efficacy of antibiotics. Though their ability to produce lipase makes them industrially potent organisms, their competence to resist several antibiotics and metals that are toxic makes this study immensely relevant. In addition, their ability to negate heavy metal toxicity makes them potential candidates for bioremediation. Finally, the green mung bean seed germination test showed a significant favourable effect of BNC22A and BNC22C against Hg-stimulated toxicity.

Molecular epidemiology and virulence factors of group B Streptococcus in South Korea according to the invasiveness

BackgroundGroup B Streptococcus (GBS) causes invasive infections in newborns and elderly individuals, but is a noninvasive commensal bacterium in most immunocompetent people. Recently, the incidence of invasive GBS infections has increased worldwide, and there is growing interest in the molecular genetic characteristics of invasive GBS strains. Vaccines against GBS are expected in the near future. Here, we aimed to analyze the molecular epidemiology of GBS according to the invasiveness in South Korea.MethodsWe analyzed GBS isolates collected and stored in two hospitals in South Korea between January 2015 and December 2020. The invasiveness of these isolates was determined via a retrospective review of clinical episodes. Totally, 120 GBS isolates from 55 children and 65 adults were analyzed. Serotype and sequence type (ST) were determined using multiplex polymerase chain reaction (PCR) and multilocus sequence typing, respectively. Fourteen virulence factor-encoding genes of GBS were analyzed using multiplex PCR.ResultsForty one (34.2%) were invasive infection-related GBS isolates (iGBS). The most frequently detected serotype was III (39/120, 32.5%), and it accounted for a high proportion of iGBS (21/41, 51.2%). The most frequent ST was ST19 (18/120, 15.0%), followed by ST2 (17/120, 14.2%). Serotype III/ST17 was predominant in iGBS (12/41, 29.3%), and all 17 ST2 strains were noninvasive. The distribution of most of the investigated virulence factors was not significantly related to invasiveness; noteworthily, most of the serotype III/ST17 iGBS carried pilus island (PI) 2b (10/12, 83.3%), and the prevalence of fbsB was significantly low compared with noninvasive GBS isolates (P = 0.004). Characteristically, the combination of bca(+)-cspA(+)-pavA(+)-fbsB(-)-rib(+)-bac(-) was predominant in iGBS (24.4%, 10/41).ConclusionsSerotype III/ST17 GBS carrying PI-2b was frequently detected in iGBS. There was no significant association between invasiveness and the pattern of virulence factors; however, a specific combination of virulence factors was predominant in iGBS.

Mechanism and bearing load-capacity of compound stirrup UHPC-encased CFST columns under axial compression

To augment the synergistic performance between the outer reinforced concrete and the core concrete-filled steel tube (CFST) in standard reinforced concrete encased CFST columns, 14 columns underwent axial compression testing. Of these, 12 columns were encased with compound stirrup Ultra-High Performance Concrete (UHPC), one with compound stirrup high-strength cement-based material, and one with ordinary reinforced concrete. The experiment investigated the effects of compound stirrup forms, stirrup spacing, steel fiber content, steel tube wall thickness, outer concrete types, and core concrete strength on the final failure mode, load-displacement curve, strain characteristics, and development pattern of the specimens. Results indicated improved deformation coordination between the outer compound stirrup UHPC and the core CFST in compound stirrup UHPC encased CFST columns. The yield strength of both the compound stirrup and the steel tube was fully developed within the tested parameter range. A calculation method considering the compound stirrups, fiber constrained outer concrete, and the CFST’s contribution ratio was used to predict the ultimate bearing capacity of reinforced concrete encased CFST columns.

Genotypic and Phenotypic Characterization of Pseudomonas atacamensis EMP42 a PGPR Strain Obtained from the Rhizosphere of Echinocactus platyacanthus (Sweet Barrel).

Plant growth-promoting rhizobacteria (PGPR) are a group of bacteria that associate with the rhizosphere of plants; one of the most abundant bacterial genera in this ecological niche is Pseudomonas, which is constantly expanding due to the emergence of new species such as Pseudomonas atacamensis, whose discovery in 2019 has led to the characterization of several strains from different environments but taxonomically related. The objective of this work was to phenotypically and molecularly characterize P. atacamensis strain EMP42, isolated from the rhizosphere of Echinocactus platyacanthus. The strain EMP42 is able to use different substrates and reduce oxidative stress in plants. It is capable of improving growth parameters such as the number of inflorescences and the height of the aerial body of Arabidopsis thaliana, as well as the germination and seedling survival of the cacti Echinocactus platyacanthus and Astrophytum capricorne. The genetic structure of P. atacamensis EMP42 consists of a closed chromosome of 6.14 Mbp, and 61.1% GC content. It has 5572 genes, including those associated with PGPR activities, such as the trpABCDE, SAP, phoABPRU and acsABC genes, among others, and three ncRNA loci, nine regulatory regions, five complete rRNA operons and three CRISPR-Cas loci, showing phylogenomic similarities with the reference strain P. atacamensis B21-026. Therefore, this study contributes to the understanding of genomic diversity within P. atacamensis and, particularly, highlights the potential application of strain EMP42 as a PGPR.

Precession-Assisted 4D-STEM Strain Characterization of Semiconductor Devices

Precession-Assisted 4D-STEM Strain Characterization of Semiconductor Devices

Total stress model of clay considering small strain characteristics

Saturated soft clay has the characteristics of high compressibility, low strength, and high structural sensitivity. Its small strain characteristics have a significant impact on the deformation development and long-term bearing capacity of ocean engineering foundations. A total stress model for undrained cyclic loading of clay considering small strain characteristics was created based on the Overlay model. The proposed model was used to simulate the static or dynamic triaxial test results of over consolidated Chicago clay, remoulded normally consolidated Georgia kaolin, and normally consolidated clay Malaysia kaolin, respectively. The results verified that the model can simulate the static shear characteristics of clay. The model can also simulate the weakening of soil strength and strain accumulation under cyclic loading, and is suitable for analyzing the response of ocean engineering foundations under long-term cyclic loading.

Skin microbiome changes in patients with atopic dermatitis and psoriasis

Aims: The main aim of our study was identification of skin microbiome changes in patients with atopic dermatitis and psoriasis. The focus of our research were microorganisms of Staphylococcus spp. genus. Materials and methods: The study included 34 patients with atopic dermatitis and 41 patients with psoriasis. The enrollment period lasted for 3 months. The material for cultivation was taken from 4 skin areas: lesion and normal skin of dry body skin sites (medial surface of forearm for patients with atopic dermatitis and extensor surface of elbow joint for patients with psoriasis) and scalp. Further evaluation was carried out using cultural and molecular biological research methods. The obtained data were statistically processed. Results: The study included 34 patients with atopic dermatitis and 41 patients with psoriasis. Mean SCORAD for atopic dermatitis group was 51,5912,75 and mean PASI for psoriasis group was23,7214,14. Mean SCORAD for atopic dermatitis patients who carries toxigenic S.аureus strains was 57,439,75, in group without toxigenic S.аureus strains mean SCORAD was statistically significant lower - 37,908,63 (р=0,054). Mean SCORAD for atopic dermatitis patients who carries S.epidermidis commensal strain was 51,312,75, difference between this group and toxigenic S.аureus strains group of patients was insignificant (р=0,18). Mean PASI for psoriasis patients who carries toxigenic S.аureus strains was 26,412,76, mean PASI for psoriasis patients who carries S.epidermidis commensal strain was 20,99,07. Difference between S.epidermidis group and toxigenic S.аureus strains group of patients was statistically insignificant (р=0,53) with tendency to more severe disease in group of toxigenic S.аureus strains carriers. Conclusions: This study reveals some aspects of skin colonization by microorganisms belonging to Staphylococcus spp genus in patients with atopic dermatitis and psoriasis. We identify some correlations between severity of inflammatory disease and characteristics of microorganisms strain.

Strain characteristics of reinforced soft clay around tunnel under metro loads

This study investigates the Strain characteristics of reinforced soft clay surrounding a tunnel subjected to cyclic loading, employing the Global Digital Systems cyclic triaxial test on the saturated reinforced clay near Shanghai Metro Line 4’s Hailun Road station. Initially, the study examines the impacts of frequency, dynamic stress amplitude (DSA), and loading cycles on cumulative plastic strain. Following this, the orthogonal design method was employed to organize tests, and an evaluation method for assessing soil strain was developed through mathematical statistical analysis. The results indicate at the constant vibration frequency, cumulative plastic strain increases with an increase in DSA and decreases with as load frequency increases. DSA is the primary factor influencing the axial deformation of subway tunnels, whereas the interaction between load frequency and vibration frequency is negligible. The findings suggest that measures to prevent and control subway tunnel settlement should concentrate on DSA during the early stages of subway operation.

Identification, Characterization, and Homology Analysis of a Novel Strain of the Crimean-Congo Hemorrhagic Fever Virus from Yunnan, China.

Wildlife serve as potential microbial reservoirs, accounting for approximately 70% of emerging infectious diseases. Crimean-Congo hemorrhagic fever virus (CCHFV), which causes Crimean-Congo hemorrhagic fever (CCHF) in humans, is a highly pathogenic tick-borne virus prevalent in several parts of Asia, Africa, and Europe with high case fatality rates. Several CCHFV cases have been reported in Asia, the Middle East, Africa, and Southern and Eastern Europe. The disease is endemic in several parts of western China, particularly Xinjiang. Ticks of the genus Hyalomma have been identified as a principal vector and reservoir for CCHFV, although other tick species may also have a crucial role in maintaining CCHFV in endemic regions. On infection, CCHF begins as a nonspecific febrile illness that can progress to severe hemorrhagic manifestations with a higher case fatality due to the unavailability of vaccines or other therapeutic agents. In this study, we collected tissue samples from a wild dead Chinese serow (Capricornis milneedwardsii) and three Naemorhedus griseuses from Deqin County, Tibetan Autonomous Prefecture, Yunnan, China, to investigate for contagious viruses that could be transmitted to humans. We identified a novel CCHFV strain, YNDQL-415G, in the liver tissue of a dead C. milneedwardsii. We performed nucleotide and amino acid sequence homology on the full-length viral genome. The results revealed significant homology between the viral S segment to that of the Africa1 strain, while the M and L segments showed similarity with the Asia CCHFV strain, indicating potential gene reassortment in the YNDQL-415G strain. The genetic characterization of a novel CCHFV strain from a dead C. milneedwardsii raises concerns about the possibility of a new zoonotic infection. A regular survey program is recommended to track the distribution of wild animals as well as the viruses they may transmit to humans and other domestic mammals in the region.

The water weakening effect on the progressive slope failure under excavation and rainfall conditions

The water weakening effect refers to the gradual deterioration of soil mechanical properties under long-term saturation. This paper analyzed the impact of water weakening on slope stability under alternating excavation and rainfall. The field investigation speculated shale hydration as the cause of overall slope instability. The mechanical parameters of hydrated shale were determined by the parameter inversion and empirical estimation methods. The simulations were used to restore the process of parameter weakening and slope failure, and confirmed the fact that hydration causes landslide. Furthermore, the failure mechanism of slope and support structure under hydration were investigated. The results show that the mechanical parameters of the slope decreased linearly, whereas the plastic strain–time and total displacement-maximum shear stress curves of the hydrated shale exhibited three stages: slow initial growth, rapid growth in the middle term, and rapid increase in the later period; the rate of slope deformation and the factor of safety reduction also gradually increase over time; under middle stage of hydration, the middle to rear of shale were extruded, while the front first underwent tensile shear deformation, forming a plastic zone of at rear and front excavated slope; In the late stage, hydrated shale quickly reaches its yield limit (maximum shear stress of 270 kPa), the middle and rear shale is damaged and compresses the front, causing it to transform from tensile shear to compressive shear failure. The plastic zone in the rear extends forward and connects with the front ones, forming an overall landslide. Besides, preventing deep landslides caused by hydration through waterproofing, drainage, protection, and support for excavated slopes has proven difficult. Therefore, it is necessary to redesign treatment schemes based on the characteristics of stress, strain, and seepage.