We have previously identified the binding region of a new Ca 2+ antagonist semotiadil in the skeletal muscle Ca 2+ channel. To the same semotiadil derivatives, the cardiac counterpart showed distinct and different binding characteristics: semotiadil and its photoaffinity analog D51-4700 inhibited [ 3H]PN200-110 binding to cardiac membrane preparations with IC 50 values of 13–20 μM, which are 10 times higher than those in skeletal muscle. Hill slopes of the binding inhibition were 0.94–1.0 for the cardiac channels compared to 0.63–0.67 for the skeletal muscle channels. A possible explanation for the difference is that the semotiadil binding site is differently conferred in cardiac and skeletal muscle Ca 2+ channels. To reveal this within the primary structure, photoaffinity labeling of cardiac membranes was employed. [ 3H]D51-4700 was photoincorporated in several polypeptides but only the α1 subunit of the Ca 2+ channel was photolabeled in a specific manner. Antibody mapping of the [ 3H]D51-4700-labeled α1 subunit with several anti-peptide antibodies revealed that the labeled site was located solely in a peptide fragment between Cys 1461 and Lys 1529. This region encompasses the labeled site of skeletal muscle, but contains several non-identical amino acid residues, which may participate in expressing different binding characteristics between the two muscle type Ca 2+ channels.