Changes In Community Structure Research Articles

Effects and mechanisms of glyphosate as phosphorus nutrient on element stoichiometry and metabolism in the diatom Phaeodactylum tricornutum.

The ability to utilize dissolved organic phosphorus (DOP) gives phytoplankton competitive advantages in P-limited environments. Our previous research indicates that the diatom Phaeodactylum tricornutum could grow on glyphosate, a DOP with carbon-phosphorus (C-P) bond and an herbicide, as sole P source. However, direct evidence and mechanism of glyphosate utilization are still lacking. In this study, using physiological and isotopic analysis, combined with transcriptomic profiling, we demonstrated the uptake of glyphosate by P. tricornutum and revealed the candidate responsible genes. Our data showed a low efficiency of glyphosate utilization by P. tricornutum, suggesting that glyphosate utilization costs energy and that the alga possessed an herbicide-resistant type of 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase. Compared to the P-limited cultures, the glyphosate-grown P. tricornutum cells up-regulated genes involved in DNA replication, cell growth, transcription, translation, carbon metabolism, and many genes encoding antioxidants. Additionally, cellular C and silicon (Si) increased remarkably while cellular nitrogen (N) declined in the glyphosate-grown P. tricornutum, leading to higher Si:C and Si:N ratios, which corresponded to the up-regulation of genes involved in the C metabolism and Si uptake and the down-regulation of those encoding N uptake. This has the potential to enhance C and Si export to the deep sea when P is limited but phosphonate is available. In sum, our study documented how P. tricornutum could utilize the herbicide glyphosate as P nutrient and how glyphosate utilization may affect the element content and stoichiometry in this diatom, which have important ecological implications in the future ocean.IMPORTANCEGlyphosate is the most widely used herbicide in the world and could be utilized as phosphorus (P) source by some bacteria. Our study first revealed that glyphosate could be transported into Phaeodactylum tricornutum cells for utilization and identified putative genes responsible for glyphosate uptake. This uncovers an alternative strategy of phytoplankton to cope with P deficiency considering phosphonate accounts for about 25% of the total dissolved organic phosphorus (DOP) in the ocean. Additionally, accumulation of carbon (C) and silicon (Si), as well as elevation of Si:C ratio in P. tricornutum cells when grown on glyphosate indicates glyphosate as the source of P nutrient has the potential to result in more C and Si export into the deep ocean. This, along with the differential ability to utilize glyphosate among different species, glyphosate supply in dissolved inorganic phosphorus (DIP)-depleted ecosystems may cause changes in phytoplankton community structure. These insights have implications in evaluating the effects of human activities (use of Roundup) and climate change (potentially reducing DIP supply in sunlit layer) on phytoplankton in the future ocean.

Projecting community trophic structures for the last 120 000 years

Studying past community dynamics can provide valuable insights for anticipating future changes in the world's biota. However, the existing fossil record is too sparse to enable continuous temporal reconstructions of wholesale community dynamics. In this study, we utilise machine learning to reconstruct Late Quaternary community structure, leveraging the climate–trophic structure relationship. We followed a four‐stage approach: 1) identify and map trophic structure units (TSUs) at the global scale based on the guild richness and composition of terrestrial mammal species weighing over 3 kg; 2) train a random forest classifier to predict the observed distribution of TSUs based on contemporary climatic conditions; 3) hindcast the global distribution of TSUs using climatic conditions as reconstructed over the past 120 000 years; and 4) compare TSU hindcasts against elements of community structure as estimated with the fossil record. Models project significant shifts in the geographical distribution of community trophic structures, with more pronounced changes occurring during the Pleistocene–Holocene transition. These shifts exhibit regional variations, particularly in Eurasia and North America, where the models project reductions in the distribution of less‐complex trophic structures over the last 24 000 years. Hindcasts partially identified the alterations in community structure seen in the fossil record, demonstrating a match between the observed and predicted times of change in mammal community structure (between 24 and 8 ka BP). However, projections of trophic guilds diverged from fossil records during the Holocene. While the fossil record indicated a decrease in the number of grazers and carnivores, our models projected an increase in these numbers. Characterising community‐wide responses to climatic changes is essential to address key questions about past and future impacts of such changes. Although further research is needed to refine the models, our approach offers a perspective for addressing the complex interactions among climate and trophic structures and model their distributions over time.

Mechanical abrasion stimulation: Altered epidermal mucus composition and microbial community in grass carp (Ctenopharyngodon idella)

In modern high-density farming, seasonal change, fishing, transportation, and other conditions easily cause mechanical abrasion of fish skin. This leads to alterations in the material balance of the epidermal mucus composition of fish, preventing normal immune function. Subsequently, the risk of disease increases. In this study, grass carp (Ctenopharyngodon idella) was used as an object to investigate immune-related enzyme activities, structural characteristics, and physiological changes of its epidermal mucous cells caused by mechanical abrasion. Furthermore, we explored the changes in body surface mucus composition and microbial community diversity and structure. Our results showed that mechanical abrasion stimulation, significantly changed the activities of immune-related enzymes, such as lysozyme (LZM), alkaline phosphatase (AKP), and acid phosphatase (ACP) were within 24 h (P < 0.05). Their levels gradually recovered after 48 h. In contrast, no significant change was observed in superoxide dismutase (SOD) levels. The number of mucous cells increased, especially those of type I and type II mucous cells in the dorsal skin, which were significantly increased (P < 0.05). Meanwhile, the stimulation changed the metabolites composition of the fish epidermal mucus in the short term, upregulating 12-OPDA, indole, quinic acid and GSH, which are beneficial to antibacterial and anti-inflammatory, and downregulating L-saccharopine, L-2-aminoadipic acid, spermine, GSSG and ribose 5-phosphate, which disrupt protein synthesis, energy production and DNA synthesis. Additionally, these metabolite changes further affect the composition of microorganism communities, rising the abundance of certain disease-associated microorganisms, such as Acidovorax, Rhizobiaceae, Aurantimicrobium, and Leifsonia, which increases the risk of disease in fish. The findings of the present study provide a deeper understanding of the role of mucus as a component of the immune system in fish and provide a scientific basis for effective grass carp culture management and disease control.

Effects of temperature and microbial disruption on juvenile kelp Ecklonia radiata and its associated bacterial community

Ocean warming can affect the development and physiological responses of kelps, and under future climate change scenarios, increasing seawater temperatures pose a major threat to these habitat-forming species. However, little is known about the effects of warming on epiphytic bacterial communities and how an altered microbiome may interact with temperature stress, affecting the condition and survival of kelp, particularly of the potentially more vulnerable early life stages. Here, we tested the effects of thermal stress on the growth and physiological responses of juvenile kelp Ecklonia radiata in which their epiphytic bacterial community was experimentally disrupted using antimicrobials, simulating dysbiosis. We hypothesized that, under thermal stress (23°C, simulating a extreme scenario of ocean warming in Tasmania), kelp with a disrupted bacterial community would be more strongly affected than kelp with an undisrupted microbiome or kelp under ambient temperature (14°C) but with a disrupted microbiota. Thermal stress reduced growth, increased tissue bleaching and negatively affected net photosynthesis of kelp. In addition, a substantial change in the epiphytic bacterial community structure was also found under thermal stress conditions, with an increase in the abundance of potentially pathogenic bacterial groups. However, microbial disruption did not act synergistically with thermal stress to affect kelp juveniles. These results suggest that effects of elevated temperature on juvenile kelps is not microbially-mediated and that juveniles may be less susceptible to disruptions of their microbiome.

Successional development of the phototrophic community in biological soil crusts, along with soil formation on Holocene deposits at the Baltic Sea coast

Harsh environmental conditions form habitats colonized by specialized primary microbial colonizers, e.g., biological soil crusts (biocrusts). These cryptogamic communities are well studied in drylands but much less in temperate coastal dunes, where they play a crucial role in ecological functions. Following two dune chronosequences, this study highlights the successional development of the biocrust’s community composition on the Baltic Sea coast. A vegetation survey, followed by morphological species determination, was conducted. Sediment/soil cores of the different dune types were analyzed to uncover the potential impacts of the biocrust community on initial soil formation processes, with special emphasis on biogeochemical phosphorous (P) transformations. Biocrust succession was characterized by a dune type-specific community composition, shifting from thinner algae-dominated biocrusts in dynamic dunes to more stable moss-dominated biocrusts in mature dunes. The change in the biocrust community structure was accompanied by an increase in Chl a, water, and organic matter content. In total, 25 algal and cyanobacterial species, 16 mosses, and 26 lichens across all sampling sites were determined. The pedological characterization of these cores elucidated initial processes of soil genesis, such as decalcification, acidification, and the accumulation of organic matter with dune and biocrust development. Furthermore, the chemistry of iron (Fe)-containing compounds such as the Fedithionite/Fetotal ratios confirmed mineral weathering and the beginning of soil profile development. The biocrusts accumulated P over time, while the P content in the underlying sediment did not change. That implies that biocrusts take up P from the geological parent material in the dunes, thereby accumulating available P in the ecosystem, which gets transferred into subsoil horizons through leaching or redeposition. The relative proportion of the bioavailable P pool (56% to 74% of Pt) increased with dune succession. That happened at the expense of more stable bound P, which was transformed into labile P. Thus, the level of plant available P along the dune chronosequences increased due to the microbial activity of the biocrust organisms. It can be concluded that biocrusts of temperate coastal dunes play a crucial role in maintaining their habitat by accumulating nutrients and organic matter, supporting soil development and subsequent vegetation.

Change of soil bacterial communities in chemically stabilized chromium contaminated soils in an accelerated aging experiment

Chemical stabilization is a common strategy to clean Cr(VI) contaminated soils. Although many studies have reported both short-term and long-term performance of chemical stabilization, there is no work addressing the impacts of long-term Cr stability on soil bacterial communities after stabilization. In this study, an accelerated aging system that synchronized simulation acid rain leaching and freeze-thaw cycles was established for the first time. We investigated the change of Cr content, environmental variables and bacterial community structure after chemical stabilization by 50-year acid rain leaching and freeze-thaw cycle simulation. Chemical stabilization effectively decreased the content of soil Cr(VI), total Cr in leachate and Cr(VI) in leachate. Different aging conditions altered soil Cr(VI), total Cr in leachate and Cr(VI) in leachate to different extents, hinting at distinct mechanisms of long-term Cr instability between acid rain leaching and freeze-thaw cycle. Cr(VI) and chemical stabilization were identified as the most influential factors affecting soil bacterial community structure, and acid rain leaching and freeze-thaw cycle exhibited considerable but distinct impacts. Our findings provided deeper insights into the long-term restoration of bacterial community in chemically stabilized Cr(VI) contaminated soil and the long-term risk assessment of contaminated soil remediation.

Functional and structural responses of a halophilic consortium to oily sludge during biodegradation.

Biotreatment of oily sludge and the involved microbial communities, particularly in saline environments, have been rarely investigated. We enriched a halophilic bacterial consortium (OS-100) from petroleum refining oily sludge, which degraded almost 86% of the aliphatic hydrocarbon (C10-C30) fraction of the oily sludge within 7 days in the presence of 100g/L NaCl. Two halophilic hydrocarbon-degrading bacteria related to the genera Chromohalobacter and Halomonas were isolated from the OS-100 consortium. Hydrocarbon degradation by the OS-100 consortium was relatively higher compared to the isolated bacteria, indicating potential synergistic interactions among the OS-100 community members. Exclusion of FeCl2, MgCl2, CaCl2, trace elements, and vitamins from the culture medium did not significantly affect the hydrocarbon degradation efficiency of the OS-100 consortium. To the contrary, hydrocarbon biodegradation dropped from 94.1 to 54.4% and 5% when the OS-100 consortium was deprived from phosphate and nitrogen sources in the culture medium, respectively. Quantitative PCR revealed that alkB gene expression increased up to the 3rd day of incubation with 11.277-fold, consistent with the observed increments in hydrocarbon degradation. Illumina-MiSeq sequencing of 16S rRNA gene fragments revealed that the OS-100 consortium was mainly composed of the genera Halomonas, Idiomarina, Alcanivorax and Chromohalobacter. This community structure changed depending on the culturing conditions. However, remarkable changes in the community structure were not always associated with remarkable shifts in the hydrocarbonoclastic activity and vice versa. The results show that probably synergistic interactions between community members and different subpopulations of the OS-100 consortium contributed to salinity tolerance and hydrocarbon degradation.

Changes in microbial community structure and yield responses with the use of nano-fertilizers of nitrogen and zinc in wheat–maize system

The growing popularity of nano-fertilization around the world for enhancing yield and nutrient use efficiency has been realized, however its influence on soil microbial structure is not fully understood. The purpose of carrying out this study was to assess the combined effect of nano and conventional fertilizers on the soil biological indicators and crop yield in a wheat–maize system. The results indicate that the at par grain yield of wheat and maize was obtained with application of 75% of recommended nitrogen (N) with full dose of phosphorus (P) and potassium (K) through conventional fertilizers along with nano-N (nano-urea) or nano-N plus nano-Zn sprays and N100PK i.e. business as usual (recommended dose of fertilizer). Important soil microbial property like microbial biomass carbon was found statistically similar with nano fertilizer-based management (N75PK + nano-N, and N75PK + nano-N + nano-Zn) and conventional management (N100PK), during both wheat and maize seasons. The experimental data indicated that the application of foliar spray of nano-fertilizers along with 75% N as basal is a sustainable nutrient management approach with respect to growth, yield and rhizosphere biological activity. Furthermore, two foliar sprays of nano-N or nano-N + nano-Zn curtailed N requirement by 25%, furthermore enhanced soil microbial diversity and the microbial community structure. The specific microbial groups, including Actinobacteria, Bacteroidia, and Proteobacteria, were present in abundance and were positively correlated with wheat and maize yield and soil microbial biomass carbon. Thus, one of the best nutrient management approaches for sustaining productivity and maintaining sound microbial diversity in wheat–maize rotation is the combined use of nano-fertilizers and conventional fertilizers.

Management of grassland: A necessary tool to maintain plant and earthworm diversity

In temperate grassland, earthworms contribute to the major soil processes which determine most of the ecosystem services. The characteristics of plant communities in grassland are key factors in maintaining earthworm communities, however effects of different herbage management on earthworms remain largely unknown. In this context, the aim of the present study was to determine the long-term effects of herbage management on grassland plant and earthworm communities. Plants and earthworms were sampled in a 14-years-old experiment in upland grasslands (Massif central, France). Abandoned grasslands were compared with mowed grasslands and with pastures grazed by cattle (at low or high intensities) or grazed by sheep (at low intensity). Compared to abandoned grassland, herbage management by grazing or by mowing display higher leguminous plant, community-weighted mean Ellenberg light values as well as plant richness while they display lower percentage of plant litter and community-weighted mean Ellenberg nitrogen values. The differences in plant richness were associated with a significant change in plant community structure. Compared to the abandoned grassland, herbage management by grazing or mowing significantly display higher earthworm biomass and total richness. Except for pastures grazed by cattle at high intensity, earthworm abundance was at least twice that in the grassland at low grazing intensity or mowing compared to the abandoned grassland. Earthworm communities were significantly different between grazed and mown treatments notably due to changes within Aporrectodea anecic and endogeic earthworm species. Overall, herbage management by animals or by mechanical export is beneficial for plant and earthworm diversity although no clear differences between management practices for earthworm richness, total biomass or total abundance were observed. Our results highlight that abandonment does not preserve biodiversity (plant, soil macrofauna) while management of grassland by grazing or mowing is a necessary tool for biodiversity conservation and improvement.

Understanding microbiome dynamics and functional responses during acidogenic fermentation of sucrose and sugarcane vinasse through metatranscriptomic analysis

Improving anaerobic digestion of sugarcane vinasse – a high-strength wastewater from ethanol distillation – is a subject of great interest, in view of the reduction of the pollutants and recovery of methane and valuable metabolites as byproducts. Through metatranscriptomic analysis, this study evaluated the active microbiome and metabolic pathways in a continuous acidogenic reactor: Stage 1S (control): 100% sucrose-based substrate (SBS); Stage 2SV (acclimation): 50% SBS and 50% vinasse; Stage 3V: 100% vinasse. Metatranscriptome obtained from each Stage was subjected to taxonomic and functional annotations. Under SBS feeding, pH dropped to pH 2.7 and biohydrogen production was observed. As vinasse was added, pH increased to 4.1–4.5, resulting in community structure and metabolite changes. In Stage 3V, biohydrogen production ceased, and propionate and acetate prevailed among the volatile fatty acids. Release of homoacetogenesis enzymes by Clostridium ljungdahlii and of uptake hydrogenase (EC 1.12.99.6) by Pectinatus frisingensis were linked to hydrogen consumption in Stages 2SV and 3V. Metabolic pathways of vinasse compounds, such as carbohydrates, malate, oxalate, glycerol, sulfate and phenol, were investigated in detail. In pyruvate metabolism, gene transcripts of oadA (oxaloacetate decarboxylase) and mdh (malate dehydrogenase), were upregulated in Stage 3V, being mostly attributed to P. frisingensis. Acetate formation from vinasse degradation was mainly attributed to Megasphaera and Clostridium, and propionate formation to P. frisingensis. Glycerol removal from vinasse exceeded 99%, and gene transcripts encoding for glpF (glycerol uptake facilitator protein), glpK (glycerol kinase) and glpABC (glycerol-3-phosphate dehydrogenase) were expressed mostly by Pectinatus and Prevotella. mRNA profiling showed that active bacteria and gene expression greatly changed when vinasse replaced sucrose, and Pectinatus was the main active bacterium degrading the searched compounds from vinasse. The identification of the main metabolic routes and the associated microorganisms achieved in this work contributes with valuable information to support further optimization of fermentation towards the desired metabolites.

Effects of coffee pericarp and litter mulsching on soil microbiomes diversity and functions in a tropical coffee plantation, South China.

In recent decades, ecological cyclic cultivation models have attracted increasing attention, primarily because the decomposition of crop residues and litter enhances soil organic matter content, thereby altering the soil microenvironment and regulating the diversity and functions of soil microbial communities. However, the effects of different coffee waste mulching on the diversity of soil microbial communities and their functions are still unclear. Therefore, this study set up four kinds of covering treatments: uncovered coffee waste (C), covered coffee litter (L), covered coffee pericarp (P), and both covered coffee litter and pericarp (PL). The results showed that compared to the control, coffee pericarp mulching significantly increased the soil available potassium (SAK) content by 18.45% and alkali hydrolyzed N (SAN) content by 17.29%. Furthermore, coffee pericarp mulching significantly increased bacterial richness and diversity by 7.75 and 2.79%, respectively, while litter mulching had little effect on bacterial abundance and diversity was smaller. The pericarp mulching significantly increased the abundance of Proteus by 22.35% and the abundance of Chlamydomonas by 80.04%, but significantly decreased the abundance of Cyanobacteria by 68.38%, while the coffee litter mulching significantly increased the abundance of Chlamydomonas by 48.28%, but significantly decreased the abundance of Cyanobacteria by 73.98%. The increase in soil SAK promoted bacterial Anoxygenic_photoautotrophy, Nitrogen_respiration, Nitrate_respiration, Nitrite_respiration, and Denitrification functions. The above results indicate that the increase in available soil potassium and alkali hydrolyzed N content under coffee pericarp cover is the main reason for promoting the diversity and richness of bacterial community and promoting the changes in bacterial community structure and function. The use of coffee pericarps in coffee plantations for ecological recycling helps to improve the diversity of the soil microbial community and maintain the relative stability of the microbial community structure and function, promoting soil health conservation and the sustainable development of related industries.

AG1® Induces a Favorable Impact on Gut Microbial Structure and Functionality in the Simulator of Human Intestinal Microbial Ecosystem® Model.

Modulation of the human gut microbiome has become an area of interest in the nutraceutical space. We explored the effect of the novel foundational nutrition supplement AG1® on the composition of human microbiota in an in vitro experimental design. Employing the Simulator of Human Intestinal Microbial Ecosystem (SHIME®) model, AG1® underwent digestion, absorption, and subsequent colonic microenvironment simulation under physiologically relevant conditions in healthy human fecal inocula. Following 48 h of colonic simulation, the gut microbiota were described using shallow shotgun, whole genome sequencing. Metagenomic data were used to describe changes in community structure (alpha diversity, beta diversity, and changes in specific taxa) and community function (functional heterogeneity and changes in specific bacterial metabolic pathways). Results showed no significant change in alpha diversity, but a significant effect of treatment and donor and an interaction between the treatment and donor effect on structural heterogeneity likely stemming from the differential enrichment of eight bacterial taxa. Similar findings were observed for community functional heterogeneity likely stemming from the enrichment of 20 metabolic pathways characterized in the gene ontology term database. It is logical to conclude that an acute dose of AG1 has significant effects on gut microbial composition that may translate into favorable effects in humans.

Seasonal Changes in the Soil Microbial Community Structure in Urban Forests.

Urban forests play a crucial role in the overall health and stability of urban ecosystems. Soil microorganisms are vital to the functioning of urban forest ecosystems as they facilitate material cycling and contribute to environmental stability. This study utilized high-throughput sequencing technology to examine the structural characteristics of bacterial and fungal communities in the bulk soil of six different forest stands: Phyllostachys pubescens (ZL), Metasequoia glyptostroboides (SSL), Cornus officinalis (SZY), mixed broad-leaved shrub forest (ZKG), mixed pine and cypress forest (SBL), and mixed broad-leaved tree forest (ZKQ). Soil samples were collected from each forest stand, including the corners, center, and edges of each plot, and a combined sample was created from the first five samples. The results revealed that among the bacterial communities, ZKG exhibited the highest alpha diversity in spring, while ZL demonstrated the highest alpha diversity in both summer and autumn. Proteobacteria was the most abundant bacterial phylum in all six forest stand soils. The dominant fungal phylum across the six forest stands was identified as Ascomycota. Notably, the microbial community diversity of SBL bulk soil exhibited significant seasonal changes. Although ZL exhibited lower bacterial community diversity in spring, its fungal community diversity was the highest. The bulk soil microbial diversity of ZL and SSL surpassed that of the other forest stands, suggesting their importance in maintaining the stability of the urban forest ecosystem in the Zhuyu Bay Scenic Area. Furthermore, the diversity of the bulk soil microbial communities was higher in all six stands during spring compared to summer and autumn. Overall, this study provides valuable insights into the seasonal variations of bulk soil microbial communities in urban forests and identifies dominant tree species, offering guidance for tree species' selection and preservation in urban forest management.

Effects of storage conditions on the microbiota of fecal samples collected from dairy cattle.

Microbiota analyses are key to understanding the bacterial communities within dairy cattle, but the impact of different storage conditions on these analyses remains unclear. This study sought to examine the effects of freezing at -80°C immediately after collection, refrigeration at 4°C for three days and seven days and absolute ethanol preservation on the microbiota diversity of pooled fecal samples from dairy cattle. Examining 16S rRNA gene sequences, alpha (Shannon, Pielou evenness, observed features and Faith PD indices) and beta (Bray-Curtis, βw and Weighted UniFrac) diversity were assessed. The effects of storage conditions on these metrics were evaluated using linear mixed models and PERMANOVA, incorporating the farm as a random effect. Our findings reveal that 7d and E significantly altered the Shannon index, suggesting a change in community composition. Changes in Pielou evenness for 3d and 7d storage when compared to 0d were found, indicating a shift in species evenness. Ethanol preservation impacted both observed features and Faith PD indices. Storage conditions significantly influenced Bray-Curtis, βw, and Weighted UniFrac metrics, indicating changes in community structure. PERMANOVA analysis showed that these storage conditions significantly contributed to microbiota differences compared to immediate freezing. In conclusion, our results demonstrate that while refrigeration for three days had minimal impact, seven days of refrigeration and ethanol preservation significantly altered microbiota analyses. These findings highlight the importance of sample storage considerations in microbiota research.

Relatório temático sobre espécies exóticas invasoras no Brasil: sumário para tomadores de decisão

Abstract Biological invasions are one of the major threats to biodiversity and good quality of life, resulting from the translocation of species by human action. There are more than 500 alien species currently invading ecosystems in Brazil, particularly plants and fishes, while little is known about invasive microorganisms. Although invasive alien species are present in all ecosystems in the country, most have been recorded in habitats with greater human interference, such as urban and peri-urban areas, farmland, dams, reservoirs, ports, and canals. Historically, the southern and southeastern regions of Brazil have had more invasive alien species, but there has been an increase in the number of invasive alien species in the central-western and northern regions in recent decades. The ornamental trade of plants and fishes as well as the illegal pet trade of wild mammals and reptiles are some of the main pathways for invasive species introduction and spread in Brazil. Breeding and cultivation systems that allow escape to natural areas are a relevant route of species introductions in freshwater ecosystems, while unintentional introductions from shipping and infrastructure are of extreme concern in marine ecosystems. The negative impacts of invasive alien species on the biota mainly include changes in community structure and local decrease in native species richness, mediated by predation, competition, and ecosystem changes. Most negative impacts are recorded for intentionally introduced species, such as fishes and plants, but unintentional introductions have led to impacts on good quality of life, with associated costs and impacts on human health. The management of biological invasions faces challenges that need to be overcome, such as the lack of public knowledge about the impact of invasive alien species, the popular appeal of charismatic invasive species or those used by humans, and the use of controversial control techniques. However, successful experiences of eradication and control in terrestrial and marine ecosystems have been recorded, some of them involving public engagement in management actions. Recognizing the issue as a cross-cutting public policy and developing ongoing governance experiences are fundamental goals for the management of invasive alien species in Brazil.

Dynamic restoration mechanism of plant community in the burned area of northeastern margin of Qinghai-Tibet Plateau.

Forest fires play a pivotal role in influencing ecosystem evolution, exerting a profound impact on plant diversity and community stability. Understanding post-fire recovery strategies holds significant scientific importance for the ecological succession and restoration of forest ecosystems. This study utilized Partial Least Squares Path Modeling (PLS-PM) to investigate dynamic relationships among plant species diversity, phylogenetic diversity, soil properties, and community stability during various recovery stages (5-year, 15-year, and 23-year) following wildfires on the northeastern margin of the Qinghai-Tibet Plateau. The findings revealed: (1) Over time, species richness significantly decreased (p< 0.05 or p< 0.01), while species diversity and dominance increased, resulting in uniform species distribution. Community stability progressively improved, with increased species compositional similarity. (2) Throughout succession, phylogenetic diversity (PD) significantly decreased (p< 0.01), accompanied by rising Mean Pairwise Distance (MPD) and Mean Nearest Taxon Distance (MNTD). Net Relatedness Index (NRI) shifted from positive to negative, indicating an increasing aggregation and dominance of plants with similar evolutionary traits in burned areas. Early succession witnessed simultaneous environmental filtering and competitive exclusion, shifting predominantly to competitive exclusion in later stages. (3) PLS-PM revealed that in the early recovery stage, soil properties mainly affected community stability, while species diversity metamorphosed into the primary factor in the mid-to-late stages. In summary, this study showed that plant diversity and phylogenetic variation were successful in revealing changes in community structure during the succession process. Soil characteristics functioned as selective barriers for plant communities during succession, and community stability underwent a multi-faceted and dynamic process. The soil-plant dynamic feedback continuously enhanced soil conditions and community vegetation structure thereby augmenting stability. Post-fire vegetation gradually transitioned towards the original native state, demonstrating inherent ecological self-recovery capabilities in the absence of secondary disturbances.

Fossil cladoceran record from Lake Beloe in the Altai region (Western Siberia) during the late Holocene

An analysis of subfossil Cladocera in a 193-cm sediment core from Lake Beloe (Altai region) was conducted to trace the history of limnological conditions in the lake over the past 4600 years. Currently, a total of 34 Cladocera taxa were identified in the taphocenosis. The greatest cladoceran species richness was observed among littoral forms of Cladocera, reflecting the presence of shallow areas overgrown with macrophytes. The highest concentration of cladoceran remains was observed in the lower horizons of the core (150-191 cm, 3600-4600 cal yr BP). In this zone, the highest values of Hill indices are recorded, indicating high taxonomic diversity in the community. At a depth of 141 cm (3500 cal yr BP), significant changes in community structure occur, with Chydorus cf. sphaericus beginning to dominate. Taxonomic diversity of Cladocera noticeably increases in the upper part of the core.

Understanding the Effect of Climate Change on Migratory Birds: A Review

Climate change is being referred to as a global plague and has significant negative consequences on the world’s economic, social, and ecological systems. Extreme weather consequences like drought, floods, and heat waves have had unprecedented occurrences and have had substantial effects on animals and plants. Climate change significantly influences animal phenologies, such as bird arrival and egg-laying times. As a result of these present and future climate change impacts, species interactions with their local environment are anticipated to change, resulting in changes in population size, range extent, and extinction rates. The current review discusses the effect of climate changes on migratory birds and concludes that climate change is one of the most serious dangers to world ecological systems, as indicated by the numerous ecological impacts imposed by changing climate on migratory birds. Climate change significantly affects breeding strategies, migration, distribution, latitudinal or altitudinal shift, community structure change, morphological change, and elimination or extinction of migratory birds. The current review attempts to communicate research and advances in the effect of climate change on migratory birds to different actors in society, including researchers, conservationists, practitioners, and policymakers.

Precipitation Variability Has a Weak but Significant Stabilizing Effect on Community Structure

Climate variability is an important factor leading to spatial and temporal changes in structure and functions of plant communities. Exploring the temporal stability of communities in response to climate variability is essential for further evaluating the impacts of climate change to ecosystem functions and services. Current research on climate variability mainly focuses on plot-scale experiments (alpha scale), while how it impacts the long-term stability of a metacommunity (gamma scale) still needs further study. We analyzed the effects of climate variability on the temporal stability of plant communities at alpha and gamma scales based on a long-term observation of plant cover from 1938 to 1968 in a mixed-grass prairie in Kansas, western United States. The results demonstrated that precipitation variability strengthened alpha and gamma stability of plant cover, while the temporal mean of temperature has opposite effects on them. Precipitation variability enhanced alpha stability directly and indirectly by increasing species asynchrony, though its positive effects were weak. Alpha stability combined with spatial asynchrony further promoted gamma stability. We therefore concluded that precipitation variability had a weak but significant stabilizing effect on community structure. These findings reveal the role of precipitation variability in temporal stability of community structure at alpha and gamma scales over decades, which could contribute to a more comprehensive understanding of the conservation of biodiversity and ecosystem functioning under the future climate change. Our study emphasized that both temporal mean and standard variation of climate should be considered when exploring the effects of climate change on ecosystem functions.

Bacterial community structure of Physalis peruviana L. fruit exocarp and the presence of pathogens with possible implications on food safety.

Cape gooseberry (Physalis peruviana L.) is a wellconsumed crop in Ecuador, whose fruits are abundant in bioactive molecules. Its rapid post-harvest deterioration and safety limit its market potential. To gather baseline data on the prevalence of bacterial taxa among groups, we employed 16S ribosomal RNA (16S rRNA) amplicon gene sequencing to detect changes in the bacterial community structure in cape gooseberry fruits harvested from an organic farm production system (# 270 samples x two ripeness stages), and fruits obtained from an open-air market (#270). This is the first report of bacterial taxa inhabiting cape gooseberry fruits. Shannon's diversity index revealed that the fruits purchased from the market and the unripe stage had the highest level of bacterial diversity (average Shannon indices of 3.3 and 3.1) followed by those collected from the field at the mature ripe stage (2.07). Alpha diversity analysis indicated that there were no significant differences in the number of taxa or evenness within the sample, whereas there was a significant difference in beta diversity between the groups. Rhizobiaceae was the most abundant family in fruits originating from the field regardless of the ripe stage, while Acetobacteraceae, Pseudomonadaceae, Fusobacteriaceae, Bacteroidaceae, and Erwiniaceae were the most abundant families in the market group. At the genus level, Liberibacter was the most abundant phytopathogen in fruits originating from the field, while Gluconobacter was the most abundant in samples collected from the market. The phytopathogen Candidatus_Liberibacter was the most abundant in samples collected from the field, while the fruits purchased from the market stands contained opportunistic enteric pathogens such as Escherichia vulneris, Klebsiella pneumoniae, and K. variicola, their relative abundance varied with the sample. In addition, potential pathogens of animal origin such as Fusobacterium necrophorum, Porphyromonas levii, Helcococcus ovis, and Trueperella pyogenes were found in almost all samples at varying relative abundance. Our study provides basic information on the microbiome of cape gooseberries from agriculture fields to the table along with the detection of several pathogenic microorganisms with possible impact on food safety and public health therefore, strategies for reducing bacterial contamination in both farm and retail markets are compulsory.