Changes In Community Composition Research Articles

Climate change drives fish communities: Changing multiple facets of fish biodiversity in the Northwest Pacific Ocean

Global marine biodiversity is experiencing significant alterations due to climate change. Incorporating phylogenetic and functional diversity may provide novel insights into these impacts. This study used an ensemble model approach (random forest and boosted regression tree), to predict the habitat distribution of 47 fish species in the Northwestern Pacific under contemporary (2000–2014) and future scenarios (2040–2050, 2090–2100). We first examined the relationship between eleven functional traits and habitat changes, predicting the spatial distribution of functional traits within fish communities. A significant correlation was observed between temperature preference and habitat changes, highlighting the vulnerability of cold-water species and potential advantages for warm-water species in the future. Moreover, fish communities exhibited a spatial gradient distribution with southern regions characterized by shorter-lived and earlier maturity, contrasting with longer-lived and later maturity species in the north. Secondly, to assess the impact of climate change on marine biodiversity, we explored the taxonomic, phylogenetic, and functional diversity under contemporary and future scenarios, revealing higher indices in the East China Sea (ECS) and the coastal sea of Japan, with the Taiwan Strait emerging as a contemporary biodiversity hotspot. In future scenarios, the three biodiversity indices would decline in the Yellow Sea and ECS, but increase in the sea beyond the continental shelf, coastal sea of Hokkaido, and Sea of Okhotsk. Lastly, we explored processes and mechanisms in the change of community composition. By quantifying β-diversity, we identified species loss (nestedness) as the primary driver of fish community change by 2040–2050, with species replacement (turnover) predicted to become dominant in the far future. Our results explore the potential changes in multiple facets of fish biodiversity, providing crucial insights for policymakers aiming to protect fish resources and biodiversity.

Development of root rot in Zanthoxylum bungeanum is closely linked to changes in soil microbial communities, enzyme activities, and physicochemical factors

Due to the emergence of root rot (RR), it can cause harm to the health of Zanthoxylum bungeanum (Z. bungeanum) plants. However, the reason for this is not clear, and further research is needed. We selected healthy and RR-affected 6-year-old Z. bungeanum trees (infected for 1 year), collected their rhizosphere and bulk soils, and analyzed soil microbial communities, enzyme activities, and physicochemical properties. When the plants were diseased, soil water content (SWC), available potassium (AK), organic matter (OM) contents, β-1,4-glucosidase (β-G) activity, and fungal Shannon index significantly decreased, while bacterial Shannon index significantly increased in the rhizosphere soil. Soil total nitrogen (TN), SWC, AK, OM contents, and β-G and N-acetyl-glucosamine (NAG) activity significantly reduced, while fungal Simpson index significantly increased in the bulk soil. There were significant differences in the bacterial communities of bulk and rhizosphere soil. However, there were no obvious differences in the fungal communities. Pearson's correlation analysis showed that changes in soil microbial communities were significantly correlated with changes in the contents of TN, AK, OM, and SWC, as well as the activities of β-G and NAG. In summary, changes in soil AK, OM, SWC, and TN resulted in changes in microbial community composition, as well as changes in β-G and NAG activities, and these alterations may lead to RR in Z. bungeanum.

Elevated O3 has stronger effects than CO2 on soil nematode abundances but jointly inhibits their diversity in paddy soils

Anthropogenic activities have resulted in rising atmospheric concentrations of carbon dioxide (CO2) and ozone (O3), exerting substantial direct and indirect impacts on soil biodiversity within agroecosystems. Despite the considerable attention given to the individual impacts of elevated CO2 and O3 levels, the combined effects on soil nematode communities have not been extensively explored. In this study, we investigated the interactive effects of elevated CO2 (+200 ppm, eCO2) and O3 (+40 ppb, eO3) levels on the abundance, diversity, and trophic composition of soil nematode communities associated with two rice cultivars (Nanjing 5055, NJ5055 and Wuyujing 3, WYJ3). Our findings revealed that soil nematodes had greater abundances under eO3, whereas eCO2 had no significant impacts. Conversely, both eCO2 and eO3, and their combination led to significant reductions in nematode generic richness, accompanied by a decline in the diversity particularly associated with the WYJ3 cultivar. Moreover, eCO2 and eO3 influenced nematode community composition and environmental factors, particularly for the WYJ3 cultivar. Both eCO2 and eO3 significantly increased soil nitrate levels. The changes in nematode community composition were related to soil nitrate levels, as well as nitrogen and carbon concentrations in rice plant roots. Furthermore, interactions between eCO2 and eO3 significantly impacted soil nematode abundance and trophic composition, revealing intricate consequences for soil nematode communities that transcend predictions based on single-factor experiments. This study unveils the potential impacts posed by eCO2 and eO3 on soil biodiversity mediated by rice cultivars, plant functional characteristics and soil feedback mechanisms, thereby underscoring the complex and interactive outcomes arising from concurrent drivers of climate change within the soil food web.

Managing tobacco black shank disease using biochar: direct toxicity and indirect ecological mechanisms.

Black shank disease in tobacco, caused by Phytophthora nicotianae, can lead to yield losses of 30%-50% upon outbreak. Recently, biochar derived from agricultural waste has shown significant potential in controlling soil-borne diseases, though its mechanisms remain unclear. Over a 3-year observation period, we found that the incidence of black shank was significantly lower in plots amended with biochar compared with normal cultivation plots. To investigate the underlying mechanisms, we studied both the direct and indirect effects of biochar on black shank. Direct antifungal assays indicated that biochar reduced the total number of sporangia by 53.91%. Further pot experiments revealed a 62.34% reduction in the P. nicotianae population in the soil following biochar application. Additionally, biochar application led to notable changes in soil physicochemical properties and microbial community composition. Microbial species analysis showed that biochar promoted the aggregation of beneficial microbes such as Sphingomonas, Flavisolibacter, and Mucoromycota. Functional predictions using the PICRUSt 2 software revealed that biochar enhances bacterial functions related to antimicrobial substance synthesis (Tetracycline biosynthesis), detoxification metabolism (D-arginine and D-ornithine metabolism, arginine and proline metabolism), and lipid and fatty acid metabolism (Lipopolysaccharide biosynthesis, fatty acid biosynthesis), while fungal functions showed no significant changes. This suggests that rhizosphere bacteria play a more prominent role in the suppression of black shank by biochar, a finding supported by partial least squares path modeling analysis. Therefore, we hypothesize that biochar not only directly inhibits P. nicotianae growth but also regulates the composition of the rhizosphere microbial community, inducing the production of antimicrobial substances by rhizosphere bacteria, effectively preventing P. nicotianae invasion.IMPORTANCEBlack shank, a global soil-borne fungal disease in tobacco, currently lacks effective control methods. Notably, biochar derived from agricultural waste has shown significant potential in controlling soil-borne diseases. Over a 3-year observation period, we found that plots amended with biochar had a significantly lower incidence of black shank compared with normal cultivation plots. However, the mechanisms of disease suppression remained unclear. Through in vitro antifungal assays and pot experiments, we discovered that tobacco-derived biochar can directly inhibit the growth of the pathogen. Additionally, biochar regulates the composition of the rhizosphere microbial community, inducing rhizosphere bacteria to produce antimicrobial substances, effectively preventing pathogen invasion. This discovery reveals both the direct and indirect mechanisms by which biochar suppresses black shank in tobacco. It provides a scientific basis for developing green control technologies for black shank and offers theoretical support for the application of biochar in managing soil-borne diseases in tobacco cultivation areas.

Coral responses to a catastrophic marine heatwave are decoupled from changes in total coral cover at a continental scale.

The services provided by the world's coral reefs are threatened by increasingly frequent and severe marine heatwaves. Heatwave-induced degradation of reefs has often been inferred from the extent of the decline in total coral cover, which overlooks extreme variation among coral taxa in their susceptibility and responses to thermal stress. Here, we provide a continental-scale assessment of coral cover changes at 262 shallow tropical reef sites around Australia, using ecological survey data on 404 coral taxa before and after the 2016 mass bleaching event. A strong spatial structure in coral community composition along large-scale environmental gradients largely dictated how coral communities responded to heat stress. While heat stress variables were the best predictors of change in total coral cover, the pre-heatwave community composition best predicted the temporal beta-diversity index (an indicator of change in community composition over time). Indicator taxa in each coral community differed before and after the heatwave, highlighting potential winners and losers of climate-driven coral bleaching. Our results demonstrate how assessment of change in total cover alone may conceal very different responses in community structure, some of which showed strong regional consistency, and may provide a telling outlook of how coral reefs may reorganize in a warmer future.

Long‐term and landscape impacts of buffel grass on arid plant communities: Ecosystem shifts and acceleration by fire

AbstractPlant invasions drive biodiversity loss, transform ecosystems, and promote positive‐feedback cycles between invasion and fire. However, the long‐term impacts of invasive grasses across landscapes with diverse plant communities and interactions with fire are poorly known. Our objectives were to examine whether buffel grass (Cenchrus ciliaris), a globally significant plant invader, altered the abundance of understory and overstory plants, homogenized plant composition, and shifted ecosystems from woodlands to grassland and to explore interrelationships between invasion and fire. We combined two methodological approaches to assess invasion spread and impacts of buffel grass in the Aṉangu Pitjantjatjara Yankunytjatjara (APY) Lands of arid central Australia: a before‐after‐control‐impact (BACI) experiment over 25 years at 15 sites and a paired‐plot (randomized‐block) experiment at 18 sites. Both experiments spanned two geographic regions and multiple vegetation communities situated on flat plains and rocky hills. We used generalized linear mixed models to analyze predictions about plant abundance and permutational multivariate ANOVA (PERMANOVA) and permutational multivariate analysis of dispersion (PERMDISP) to examine changes in community composition. Fire and invasion interactions were explored using fire history or the relative fire tolerance of plant species as covariates, predictors, or responses. Fire interacted with the invasion process in multiple ways. Invaded sites had burnt more frequently and recently than native sites in one region, and where propagules were present in 1995, buffel grass abundance increased most when fires ensued. Abundance of understory plant functional groups (native grasses, ferns, and vines) decreased with invasion, and understory shrubs decreased due to frequent fires in invaded sites. Overstory composition shifted from fire‐sensitive species toward fire‐tolerant species, but this was not directly attributable to invasion. Partial evidence for ecosystem regime shifts included homogenization of understory communities in invaded rocky hills, and an increase in woody shrub cover at native but not invaded sites over 25 years, resulting in a 5% cover difference by 2019. Impacts were detected across heterogeneous ecological communities at a scale not previously tested amongst high background community variability. Although invasion is not dependent on fire, the acceleration of invasion spread and impacts with fire is a critical consideration for future research and management of grass invaders.

Changes in Soil Bacterial and Fungal Community Composition and Functional Groups During the Artificial Restoration of Degraded Grassland of "Black-Soil Mountain".

About 35% of grassland in Sanjiangyuan area of China has degenerated into black-soil mountain. Artificial grassland is considered to be an effective measure to alleviate the severely degraded grassland in the alpine region of the three rivers and has been widely used. However, the pattern, potential function, and changes of carbon and nitrogen contents of soil microorganisms in degraded grassland in Heimushan by planting artificial grassland are still unclear. In this study, mixed-sown artificial alpine grassland (AG) was the focus of our study, whereas degraded black-soil mountain grassland (BG) and natural alpine grassland (NG) served as controls. Illumina 16S and ITS gene sequence analyses were used to analyze the community structure of the soil bacteria and fungi. The functional groups of NG, AG, and BG were predicted using the FAPROTAX and FUNGuild databases. In addition, the levels of soil carbon, nitrogen, and soil enzyme activities were evaluated. The results indicated a significant increase in the aboveground biomass of BG due to the planting artificial grassland. Moreover, the contents of total carbon (TC), total nitrogen (TN), ammonium nitrogen ( ), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), and leucine aminopeptidase (LAP) increased in the soil. Planting artificial grasslands changed the composition of bacterial and fungal communities. Among these, the bacterial community was more sensitive to planting artificial grasslands. The relative abundance of bacterial functional groups involved in carbon and nitrogen cycling changed significantly, suggesting that bacteria may play a role in regulating nutrient cycling during artificial grassland planting. Soil TC, TN, LAP, and affected the microbial community structure related to carbon and nitrogen. and β-1,4-glucosidase were carbon and nitrogen factors, respectively, that affected functional changes in fungi. These results indicate that planting artificial grasslands can effectively enhance the productivity of degraded black-soil mountain and regulate soil microbial communities and soil physical and chemical properties.

Novel oil-associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes.

The Arctic Ocean is an oligotrophic ecosystem facing escalating threats of oil spills as ship traffic increases owing to climate change-induced sea ice retreat. Biostimulation is an oil spill mitigation strategy that involves introducing bioavailable nutrients to enhance crude oil biodegradation by endemic oil-degrading microbes. For bioremediation to offer a viable response for future oil spill mitigation in extreme Arctic conditions, a better understanding of the effects of nutrient addition on Arctic marine microorganisms is needed. Controlled experiments tracking microbial populations revealed a significant decline in community diversity along with changes in microbial community composition. Notably, differential abundance analysis highlighted the significant enrichment of the unexpected genera Lacinutrix, Halarcobacter and Candidatus Pseudothioglobus. These groups are not normally associated with hydrocarbon biodegradation, despite closer inspection of genomes from closely related isolates confirming the potential for hydrocarbon metabolism. Co-occurrence analysis further revealed significant associations between these genera and well-known hydrocarbon-degrading bacteria, suggesting potential synergistic interactions during oil biodegradation. While these findings broaden our understanding of how biostimulation promotes enrichment of endemic hydrocarbon-degrading genera, further research is needed to fully assess the suitability of nutrient addition as a stand-alone oil spill mitigation strategy in this sensitive and remote polar marine ecosystem.

Harmful Microalgae Exhibit Broad Environmental Adaptability in High-Salinity Area Across the Dafengjiang River Estuary.

Harmful algal blooms (HABs) often occur in estuaries due to their unique environmental heterogeneity, posing significant environmental and human health risks. However, there is limited understanding of the community composition and community-level change points (thresholds) of harmful microalgae in subtropical estuaries. This study explored harmful microalgae community structure and thresholds in the Dafengjiang River estuary using a metabarcoding approach. The results revealed 63 harmful microalgae species, and major species included Guinardia flaccida, Prorocentrum cordatum, Thalassiosira punctigera, Pseudo-nitzschia galaxiae and T. gravida. Nonparametric change-point analysis and threshold indicator taxa analysis (TITAN) showed threshold responses of harmful microalgae community structure to ammonium (57.5-60 μg·L-1), total phosphorus (27.8-28.5 μg·L-1) and dissolved inorganic phosphorus (14.5-28 μg·L-1) along the salinity gradient. Wider environmental thresholds were also found in hypersaline areas. Additionally, Pyrodinium bahamense, Pfiesteria piscicida, Skeletonema tropicum and T. punctigera were sensitive to environmental changes and thus could be used as bioindicators. Overall, our study unveiled diverse abrupt transitions of harmful microalgal communities, providing a risk assessment for human health and ecological safety in subtropical estuary ecosystems.

Effects of fire and fire-induced changes in soil properties on post-burn soil respiration

Abstract Background Boreal forests cover vast areas of land in the northern hemisphere and store large amounts of carbon (C) both aboveground and belowground. Wildfires, which are a primary ecosystem disturbance of boreal forests, affect soil C via combustion and transformation of organic matter during the fire itself and via changes in plant growth and microbial activity post-fire. Wildfire regimes in many areas of the boreal forests of North America are shifting towards more frequent and severe fires driven by changing climate. As wildfire regimes shift and the effects of fire on belowground microbial community composition are becoming clearer, there is a need to link fire-induced changes in soil properties to changes in microbial functions, such as respiration, in order to better predict the impact of future fires on C cycling. Results We used laboratory burns to simulate boreal crown fires on both organic-rich and sandy soil cores collected from Wood Buffalo National Park, Alberta, Canada, to measure the effects of burning on soil properties including pH, total C, and total nitrogen (N). We used 70-day soil incubations and two-pool exponential decay models to characterize the impacts of burning and its resulting changes in soil properties on soil respiration. Laboratory burns successfully captured a range of soil temperatures that were realistic for natural wildfire events. We found that burning increased pH and caused small decreases in C:N in organic soil. Overall, respiration per gram total (post-burn) C in burned soil cores was 16% lower than in corresponding unburned control cores, indicating that soil C lost during a burn may be partially offset by burn-induced decreases in respiration rates. Simultaneously, burning altered how remaining C cycled, causing an increase in the proportion of C represented in the modeled slow-cycling vs. fast-cycling C pool as well as an increase in fast-cycling C decomposition rates. Conclusions Together, our findings imply that C storage in boreal forests following wildfires will be driven by the combination of C losses during the fire itself as well as fire-induced changes to the soil C pool that modulate post-fire respiration rates. Moving forward, we will pair these results with soil microbial community data to understand how fire-induced changes in microbial community composition may influence respiration.

Species Richness and Similarity of New Zealand Mayfly Communities (Ephemeroptera) Decline with Increasing Latitude and Altitude.

The distribution of species in relation to latitude and altitude is of fundamental interest to ecologists and is expected to attain increasing importance as the Earth's climate continues to change. Species diversity is commonly greater at lower than higher latitudes on a global scale, and the similarity of communities frequently decreases with distance. Nevertheless, reasons for such patterns are not well understood. We investigated species richness and changes in community composition of mayflies (Ephemeroptera) over 13 degrees of latitude at 81 locations throughout New Zealand by light-trapping and the benthic sampling of streams. Mayflies were also sampled along an altitudinal gradient on a prominent inactive volcano in the east of North Island. Sampled streams were predominantly in the native forest, at a wide range of altitudes from sea level to c. 1000 m a. s. l. A total of 47 of the 59 described New Zealand mayflies were recorded during the study, along with five undescribed morphospecies. Species richness declined and the degree of dissimilarity (beta diversity) of mayfly communities increased significantly from north to south but less strongly with increasing altitude. Our results suggest that the southward decline in species richness has historical origins with the north of the country having acted as a major refuge and region of speciation during the Pleistocene. The increasing dissimilarity of the northern and southern communities may reflect an increasingly harsh climate, variable amounts of subsequent southward dispersal of northern species and, in the South Island, the presence of species which may have evolved in the newly uplifted mountains during the Miocene-Pliocene.

Distribution of tetracyclines and sulfonamides resistance genes around a smallholder pig farm: Modeling and attribution

Livestock farm is a major source of antibiotics and antibiotic resistance genes (ARGs) pollution. ARGs can directly enter the environment through runoff and air deposition. The impact extent and the driving factors require further investigation to inform effective policies and actions to mitigate their spread. This study investigated a smallholder pig farm and its surrounding areas to understand the spread of ARGs. Topsoil samples were collected from 56 different sites within one kilometer of the farm, and a comprehensive analysis was conducted to reveal effects of soil properties, antibiotic residues, microbiome, mobilome on the variation of typical ARGs. The results confirmed that the ARGs reduced exponentially with increasing distance from the farm, with a goodness of fit (R2) of 0.7 for total ARGs. For tetracyclines (TC) and sulfonamides (SA) resistance genes, the fitting R2 exceeded 0.9. Model estimates allowed for quantitative comparisons of in-farm increments, out-farm background levels, and spread abilities of ARGs with distinct resistance mechanisms. SA-specific resistance genes (SRGs, 0.097 copies/16S rRNA gene) and TC-specific resistance genes (TRGs, 0.036 copies/16S rRNA gene) showed higher within-farm increases compared to multidrug resistance genes (MDRGs, 0.020 copies/16S rRNA gene). MDRGs, however, had a higher background level and a greater impact distance (0.18 km, 4.4 times the farm radius). Additionally spread abilities of TRGs varied by resistance mechanism, with ribosome protection proteins showing greater spread than TC inactivating enzymes and TC efflux pumps, likely due to different fitness costs. Correlation analysis and structural equation modeling indicated that changes in bacterial community composition and mobilome are primary factors influencing ARGs variation during their spread. Abiotic factors like soil nutrients and antibiotics also selectively enriched ARGs within the farm. These findings provide insights into the ARGs dissemination and could inform strategies to prevent their spread from smallholder livestock farms.

Characteristics of Pinus hwangshanensis Rhizospheric Fungal Community along Huangshan Mountain's Elevation Gradients, China.

Elevation gradients strongly influence the diversity pattern of soil microorganisms. To date, many studies have elucidated the response of soil microbes to changes in elevation gradients. However, the effects of these gradients on the assembly mechanisms and network complexity of rhizospheric microbial communities remain underexplored. To bridge this knowledge gap, this study assessed the response of rhizospheric fungal communities of Pinus hwangshanensis along different elevation gradients in the Huangshan Mountain scenic area with regard to diversity, community composition, and assembly mechanisms using high-throughput amplicon sequencing. The results revealed significant differences in rhizospheric fungal community composition across three elevation gradients. The soil organic matter and pH were the most relevant factors influencing the changes in rhizospheric fungal community composition. The rhizospheric fungal diversity was significantly lower at both low and high elevations compared to the medium elevation. The rhizospheric fungal community assembly showed a more deterministic process at low and high elevations than at the medium elevation, indicating that stronger environmental filtering contributed to reduced fungal diversity at the extremes of the elevation gradient. In addition, rhizospheric pathogens, particularly Dermateaceae, acted as keystone taxa, diminishing the stability of co-occurrence networks at the medium elevation. This study contributes to a more comprehensive understanding of rhizospheric fungal community patterns and their ecological functions along elevation gradients in mountainous regions.

Response of parasitoid communities to insecticide application during a Lymantria dispar outbreak in mixed oak forests

Abstract In the temperate mixed oak forests of Central Europe, outbreaks of insects such as the spongy moth, Lymantria dispar, can cause severe defoliation and insecticide is sometimes applied for their control. Parasitoids, mainly Hymenoptera and Diptera, are among the most diverse and important natural enemies of caterpillars in these forests. However, due to their cryptic lifestyle and taxonomic difficulties, we lack knowledge on the impact of insecticide applications on complex host‐parasitoid networks. In a large‐scale field experiment, we tested the effect of spraying the lepidopteran‐specific insecticide Mimic (tebufenozide) on the abundance and community composition of both adult and larval parasitoids. We combined morphological identification, DNA barcoding and metabarcoding to identify parasitoids adult or inside caterpillars, both sampled by canopy fogging during an outbreak and two subsequent years. We analysed the abundance of parasitoids, community composition and network specialisation using statistical methods that account for sample incompleteness in host‐parasitoid data. For adult parasitoid assemblages, we found strong annual effects on abundance, with highest numbers of adult parasitoids occurring in the outbreak year, as well as on annual changes in community composition, but no effect linked to insecticide application. However, the abundance and species number of immature parasitoids revealed negative effects of insecticide application, while community composition was only affected by annual variation. Coverage‐based network analyses showed a reduction of taxonomic network diversity and network specialisation associated with insecticide application in the first 2 years. Synthesis and applications: This real‐world experiment shows that parasitoid populations respond immediately to large‐scale outbreaks but only limited to local disturbances. Results indicate that this group of natural enemies exhibits high mobility, enabling them to track host populations across large spatial scales. However, our observation of reduced network specialisation after insecticide application is a warning signal that ecosystem function, and consequently natural pest control services, may be impaired by human interference at the local stand scale.

Study on the purification of aquaculture tailwater under Sulfamethoxazole stress using algae-bacteria biofilms: Nutrient removal efficiency, microbial community, and ARGs

This study explored the dynamic processes of algae-bacteria biofilms in the remediation of aquaculture pond effluents as a novel treatment strategy. The purification capacity of the biofilms, changes in community composition, and their impact on the dissemination of antibiotic resistance genes (ARGs) were investigated under the application of sulfamethoxazole (SMX) at concentrations ranging from 100 to 1000 μg/L. The study also considered the factors influencing the abundance and diversity of ARGs and mobile genetic elements (MGEs) across different seasons, including the roles of environmental parameters and microbial community structure.The results showed that, although exposure to SMX reduced nutrient removal efficiency, photosynthetic activity, and increased oxidative stress levels, the biofilms maintained relatively high purification efficiency (with nutrient removal rates ranging from 67.62 % to 93.23 % and SMX removal rate reaching 50.13 % ± 12.34 %), demonstrating adaptability to SMX stress. Network analysis identified key microbial carriers responsible for ARG dissemination, highlighting the complex interactions between environmental factors, microbial communities, and resistance gene propagation. These findings enhance our understanding of biofilm-based water treatment systems and the seasonal factors affecting the dynamics of ARGs and MGEs.

Resilience of socio-technical transportation systems: A demand-driven community detection in human mobility structures

Existing scholarship on transportation resilience analysis has primarily focused on engineering resilience, often overlooking the intricate socio-technical dimensions. This oversight underscores the necessity for a more comprehensive understanding of the dynamic interplay between social, including travel behaviors, and technical infrastructure components within transportation systems. This article delves into the impact of “social shocks” on transportation systems, which are defined as disturbances affecting the social subsystem without yet affecting the technical subsystem. Drawing inspiration from C.S. Holling’s ecological resilience, which signifies a system’s ability to cope with change by adapting its structure and functionality, we propose a multi-level resilience assessment framework. It encompasses four mobility-related indicators: entropy (measuring network-level complexity), stationarity (assessing community compositional changes at the cluster level), and two node-level metrics — within-module degree and weighted participation coefficient — capturing location connectivity. These indicators proxy for evaluating the mobility structure and node functionality within the social subsystem. In a case study, we analyze historical smart card data to examine the mobility pattern’s structural changes within Hong Kong, a rail-oriented metropolis, during a prolonged and city-wide protest. The framework and associated indicators provide an alternative perspective for transit planners and operators, allowing them to assess both the overall system and individual stations, moving beyond traditional assessments of service supply and patronage changes.

Invasive Glossy Buckthorn (Frangula alnus) Has Weak Impact on Native Understory Plant and Saprophagous Macroarthropod Communities

Glossy buckthorn (Frangula alnus Miller) is an invasive alien plant species (IAPS) rapidly expanding in North America but is largely understudied compared to the common buckthorn (Rhamnus cathartica). Our study investigated the effects of a 27-year-old F. alnus invasion on native understory plant and saprophagous macroarthropod communities in a wet deciduous woodland in Southern Québec, Canada. We hypothesized a decreased taxonomic diversity and a change in community composition of both indicator taxa with increasing F. alnus density. The understory plant and saprophagous macroarthropod communities were characterized, respectively, through vegetation surveys and pitfall trapping across a density gradient of 43 plots invaded by F. alnus. Our results demonstrated that F. alnus did not exert a strong influence on species community composition, although the homogenization of understory plant communities was observed. Despite several decades of F. alnus invasion at our study site, the consequences on the selected indicator taxa were overall relatively small, suggesting that the magnitude of effects is variable. We suggest that further investigation at a larger scale should be performed to evaluate the effect of F. alnus on a broad diversity of indicators and understand any context dependency.

Miscanthus litter additions induce a successional change in the soil micro-food web with apparent decreases in soil nitrogen

The rapid loss of soil carbon (C) from cultivated peatland soils is leading to the use of high lignin, C-rich litter amendments as a potential solution to slow C losses. These chemically recalcitrant litter inputs are expected to cause microbial nitrogen (N) immobilization as a result of changes in the soil micro-food web, but whether bioavailable N is altered by litter as it is decomposed by the micro-food web remains unclear. We monitored changes in the soil nematode, fungal, and bacterial communities over time and across space (the rhizosphere and bulk soil) after field-applying different types of ligneous litter from miscanthus, ash, willow, or larch to a cultivated peatland soil. We found that miscanthus grass (C:N = 118) induced succession from fast-growing nematodes (cp-1) to slower-growing, cp-3 and cp-4 nematodes and this corresponded to reduced N availability. This lower soil N was likely due to relatively higher microbial biomass we observed with miscanthus, combined with a decrease in fast-growing bacterivores, limiting N mineralization from nematode grazing. We did not observe strong effects on the soil micro-food web or microbial biomass N for the other woody litters that had much higher C:N. This indicates that the changes in nematode community composition following ligneous litter inputs and subsequent impacts on soil N depend on litter type but are independent of litter C:N. Miscanthus amendments also corresponded to the lowest lettuce yield of all the amendments and thus caution is raised when using miscanthus straw as a widely-applied litter. Our results provide a useful reference to predict the effect of litter amendments on cultivated peatland soils through soil micro-food web dynamics, and bioavailable N for the crop.

Changes of bacterial versus fungal community composition along a forest degradation gradient of logged-over tropical rain forests, and their consequences on soil enzyme activities in Malaysian Borneo

Changes of bacterial versus fungal community composition along a forest degradation gradient of logged-over tropical rain forests, and their consequences on soil enzyme activities in Malaysian Borneo

Predicting how varying moisture conditions impact the microbiome of dust collected from the International Space Station

BackgroundThe commercialization of space travel will soon lead to many more people living and working in unique built environments similar to the International Space Station, which is a specialized closed environment that contains its own indoor microbiome. Unintended microbial growth can occur in these environments as in buildings on Earth from elevated moisture, such as from a temporary ventilation system failure. This growth can drive negative health outcomes and degrade building materials. We need a predictive approach for modeling microbial growth in these critical indoor spaces.ResultsHere, we demonstrate that even short exposures to varying elevated relative humidity can facilitate rapid microbial growth and microbial community composition changes in dust from spacecraft. We modeled fungal growth in dust from the International Space Station using the time-of-wetness framework with activation and deactivation limited growth occurring at 85% and 100% relative humidity, respectively. Fungal concentrations ranged from an average of 4.4 × 106 spore equivalents per milligram of dust in original dust with no exposure to relative humidity to up to 2.1 × 1010 when exposed to 100% relative humidity for 2 weeks. As relative humidity and time-elevated increased, fungal diversity was significantly reduced for both alpha (Q < 0.05) and beta (R2 = 0.307, P = 0.001) diversity metrics. Bacteria were unable to be modeled using the time-of-wetness framework. However, bacterial communities did change based on constant relative humidity incubations for both beta (R2 = 0.22, P = 0.001) and alpha diversity decreasing with increasing moisture starting at 85% relative humidity (Q < 0.05).ConclusionOur results demonstrate that moisture conditions can be used to develop and predict changes in fungal growth and composition onboard human-occupied spacecraft. This predictive model can be expanded upon to include other spacecraft environmental factors such as microgravity, elevated carbon dioxide conditions, and radiation exposure. Understanding microbial growth in spacecraft can help better protect astronaut health, fortify spacecraft integrity, and promote planetary protection as human activity increases in low-Earth orbit, the moon, Mars, and beyond.5L5VMn4841emXVRzhjbC6HVideo