As an Asian endemic species, Grus japonensis (G. japonensis) reproduction and survival rely on natural wetland resources. G. japonensis is adept at long-distance flight, thereby displaying distinct network structural characteristics in its utilization of habitat within its range. Therefore, scientific restoration and management of the ecological network (ENs) are urgently needed. On the basis of the data of G. japonensis and environmental data, this study used the MaxEnt model, stepping-stone theory, and circuit models to analyze the spatiotemporal changes in the ENs structure of G. japonensis habitat. The primary factors influencing the habitat suitability of G. japonensis was the distance to Phragmites australis (P. australis) community. The area of ecological source areas decreased from 56,528.59 hm2 in 1987 to 14,040.20 hm2 in 2021, with the distribution range contracting from Beihuan (BH), Nanhuan (NH), Hexin (HX) and Tiaozini (TZN) to Hexin (HX). Between 1987 and 2007, there were dense ecological corridors along the coastal areas. However, by 2021, only BH and HX had dense ecological corridors between them. The node centrality of HX decreased from 900.78 in 1987 to 264.64 in 2021, with the most significant decrease between 2007 and 2021. On this basis, the expanded habitat area, the stepping stone area in 2021 and the ecological source area of 2007 with low development intensity were taken as restoration areas. The restoration areas were classified into two types based on their distribution: landing nodes and expansion nodes. The addition of landing nodes enhanced the overall stability of the ENs, resulting in an increase in the centrality of nodes from 264.64 to 398.08. Finally, an optimization and restoration framework for the habitat network based on identifying priority restoration areas, land use type transformation, and enhancing ENs stability for habitat restoration was proposed.