Radiobiological studies focused mainly on tracking the effects of photons (X and gamma rays) and high-energy charged particles over low energy ions, which raises interest in studying their biological effects. Therefore, the aim of this study is to investigate the interaction of low-energy hydrogen ions beam with xcortical bovine bone as a biological model. A hydrogen ions beam was used to bombard cortical bone with different fluences; 45, 70 and [Formula: see text][Formula: see text]ions/cm2 at low energy of 5[Formula: see text]keV. The interaction of hydrogen ions with cortical bone was estimated theoretically by the SRIM/TRIM code. The obtained results showed that the average distribution range and the maximum depth for 5[Formula: see text]keV hydrogen ions are 91 and 150[Formula: see text]nm respectively. The energy losses from incident ions are 4.45[Formula: see text]keV for ionization, 170[Formula: see text]eV for phonons and 18[Formula: see text]eV for vacancies. Also, the energy losses from the recoil atoms are 119[Formula: see text]eV for ionization, 234[Formula: see text]eV for phonons and 8[Formula: see text]eV for vacancies. At the same time, the effect of low-energy hydrogen ions bombardment on the structure of bone was studied by X-ray diffraction (XRD) and FTIR.