Some remediation techniques, such as thermal remediation, can significantly change the soil properties. These changes can be beneficial or detrimental to the sequential application of Nature-based Solutions. This work evaluated the effects of thermal remediation on the properties of two tropical soils (Technosol and Oxisol), and discuss how these changes might impact both biotic and abiotic degradation processes. Bench tests using disturbed samples were performed under oxic and anoxic conditions, whereas 3D physical models were used to simulate the heat distribution along undisturbed samples. The changes in soils texture, density, hydraulic conductivity, iron concentration, mineralogy and microbiota were evaluated. The properties of Oxisol were more affected than those of Technosol due to the higher levels in Fe(III), organic carbon and finer texture. When heated in the range of 120 to 300 °C under oxic and anoxic conditions, the Fe(II) content and the magnetism intensity increased in Oxisol, probably due to the formation of magnetite. Under oxic conditions, the burning of Oxisol organic matter promoted an anoxic atmosphere, favoring the formation of Fe(II). However, the continuous increase of the temperature (>300 °C) lead to the decrease of Fe(II) due to the transformation of magnetite to maghemite, and then to hematite. The heating process also promoted some minerals decomposition and cementation of the clay fraction, increasing the soil texture. Bacterial populations were impacted, but showed ability to recover at 60 °C. However, above 100 °C no culturable cells were recovered and at temperatures above 270 °C soil sterilization occurred. The changes observed, especially in Oxisol samples, indicated that mild heating (between 120 and 240 °C), in turn, can increase the potential for abiotic degradation of some contaminants, such as chlorinated solvents. Therefore, heating conditions up to 240 °C during thermal remediation can be defined as to promote beneficial changes in soil properties, increasing its potential for natural attenuation by abiotic processes even when the microbiota is affected, and improving its sustainability.