Changes In Community Composition Research Articles

Recent increasing homogenisation in Austrian butterfly communities over the past decades

In Europe, abundance, biomass and species richness of many insect taxa declined during the last decades. This decline might be accompanied by long‐term temporal changes in community composition and dominance orders. Here, we use the data base of the natural history museum of Salzburg based on museum records and field books on Austrian butterflies covering the years 1945–2018 and asked 1) whether and how community composition of important butterfly guilds changed and 2) whether these changes are in accordance with reciprocal shifts in species abundances leading to increased functional stability. In comparisons of annual changes in dominance orders, we found an increasing tendency of compositional stability of dominant species. The trend was most pronounced in generalist and dispersive species, while dominant grassland, xerothermophilic and sedentary species tended to decrease in relative abundance. We also demonstrate a temporal trend towards increasing regional stability in relative abundance rank orders. We did not find compelling evidence for reciprocal shifts in abundances of dominant and subdominant species of the same guild and of asynchronous population fluctuations as required by models that link abundance compensation and functional stability. Our study highlights the ongoing trend towards faunal homogenisation at regional spatial scales in the European Alps.

Clarifying the murk: unveiling bacterial dynamics in response to crude oil pollution, Corexit-dispersant, and natural sunlight in the Gulf of Mexico

The 2010 Deepwater Horizon (DwH) Oil spill released an enormous volume of oil into the Gulf of Mexico (GoM), prompting the widespread use of chemical dispersants like Corexit® EC9500A. The ecological consequences of this treatment, especially when combined with natural factors such as sunlight, remain unexplored in the context of marine bacterial communities’ dynamics. To address this knowledge gap, our study employed a unique metaproteomic approach, investigating the combined effects of sunlight, crude Macondo surrogate oil, and Corexit on GoM microbiome across different mesocosms. Exposure to oil and/or Corexit caused a marked change in community composition, with a decrease in taxonomic diversity relative to controls in only 24 hours. Hydrocarbon (HC) degraders, particularly those more tolerant to Corexit and phototoxic properties of crude oil and/or Corexit, proliferated at the expense of more sensitive taxa. Solar radiation exacerbated these effects in most taxa. We demonstrated that sunlight increased the dispersant’s toxicity, impacting on community structure and functioning. These functional changes were primarily directed by oxidative stress with upregulated proteins and enzymes involved in protein turnover, general stress response, DNA replication and repair, chromosome condensation, and cell division. These factors were more abundant in chemically treated conditions, especially in the presence of Corexit compared to controls. Oil treatment significantly enhanced the relative abundance of Alteromonas, an oil-degrading Gammaproteobacteria. In combined oil-Corexit treatments, the majority of identified protein functions were assigned to Alteromonas, with strongly expressed proteins involved in membrane transport, motility, carbon and amino acid metabolism and cellular defense mechanisms. Marinomonas, one of the most active genera in dark conditions, was absent from the light treatment. Numerous metabolic pathways and HC-degrading genes provided insights into bacterial community adaptation to oil spills. Key enzymes of the glyoxylate bypass, enriched in contaminant-containing treatments, were predominantly associated with Rhodobacterales and Alteromonadales. Several proteins related to outer membrane transport, photosynthesis, and nutrient metabolisms were characterized, allowing predictions of the various treatments on biogeochemical cycles. The study also presents novel perspectives for future oil spill clean-up processes.

Synchronic shifts in phenolic compounds and fungal communities during litter decomposition in boreal forests

Phenolic compounds in plant litter influence decomposition process both directly by their own degree of decomposability and indirectly by affecting decomposer processes. While phenolic characteristics of aboveground plant biomass are well-known, the fate of litter phenolics and their regulatory effects on belowground decomposition remain unclear. We conducted a two-year decomposition experiment distributing litterbags of spruce, pine, and bilberry along a gradient from mesic spruce-dominated to xeric pine-dominated forests. Litter material was analysed for mass loss, low molecular weight phenolic compounds, condensed tannins, fungal biomass, and fungal community composition (using DNA metabarcoding). Bilberry litter initially decayed more rapidly than the conifer litter, but the remaining mass of bilberry litter was the same as for pine and higher than that of spruce litter after two years. The concentration and composition of phenolic compounds decreased with time, with mainly MeOH-insoluble condensed tannins remaining at the end of the experiment. Correspondingly, fungal biomass increased in the first year, while all litter types underwent rapid changes in fungal community composition. The species-specific pattern of temporal change in mass loss, as well as in the synchronic shift in composition of phenolic compounds and fungal community, give new insights in the importance of litter quality for the decomposition process.

Habitat-specific changes of plant and soil microbial community composition in response to fairy ring fungus Agaricus xanthodermus on the Qinghai-Tibet Plateau

Habitat-specific changes of plant and soil microbial community composition in response to fairy ring fungus Agaricus xanthodermus on the Qinghai-Tibet Plateau

Butterfly loss in urban landscapes and nature reserves

ContextUrbanization and landscape homogenization are main drivers causing biodiversity loss across the globe. The transformation of natural and semi-natural habitats into agro-environments and settlement areas causes the reduction of species diversity, and thus faunal homogenization. ObjectiveIn this study, we analyse changes in land-cover and habitat configuration and test for changes in species richness and community composition of butterflies in an urban area and a nature reserve. MethodWe analysed historical and recent aerial and satellite pictures, and studied the butterfly fauna for two areas in northern Austria, the urban area around Salzburg city and the nature reserve Bluntautal in close geographic proximity. For these analyses we consider the period 1946–2018. ResultsThe proportion of settlement area and forest increased in average by about 5%. Size of field copses increased and small-scale connectivity and thus landscape complexity decreased in both areas. In the same time span, we found a decrease in butterfly species richness for both areas, and in the nature reserve Bluntautal particularly for the past two decades by 50%. The species community composition changed significantly, with severe losses of specialist and xerothermophilic species which rely on open and extensively used ecosystems. ConclusionsThe findings underpin that the reduction of landscape complexity and the intensification of land-use including urbanization drives the loss of diversity of butterflies and changes in species composition, today dominated by some few generalist species. This trend is particularly observable for the nature reserve Bluntautal, where a large proportion of species diversity has disappeared in recent years despite nature conservation. This case underlines habitat management in nature reserves is needed to hold a high level of habitat quality and to preserve the entire species diversity.

Effects of lactic acid bacteria on rearing water bacterial community in Eriocheir sinensis culture.

The Chinese mitten crab (CMC, Eriocheir sinensi) culture in ponds is a unique aquaculture system. Probiotics are commonly used in the maintenance of the health of pond-cultured CMCs. However, the effects of probiotics on the bacterial community of CMC-culturing water remain unclear. This study utilized 16S rRNA gene amplicon sequencing to assess changes in the bacterial community composition, diversity, assembly, and co-occurrence patterns in CMC-culturing water following probiotic application. The results indicate that the α-diversity of the bacterial community in CMC-culturing water varied with time following probiotic application. The addition of probiotics to the water resulted in an increase in the occurrence of new operational taxonomic units (OTUs). The bacterial community assembly in the CMC-culturing water was shaped by a balance between deterministic and stochastic processes, while commercial probiotics enhanced the proportion of heterogeneous selection. In addition, including OTU2953 (Burkholderiaceae) and OTU3005 (Lactobacillaceae), from the commercial probiotics served as keystone species in the bacterial network of CMC-culturing water. Overall, probiotic application had a significant impact on the bacterial ecology of CMC-culturing water.

Climate change-related biodiversity fluctuations and composition changes in an old-growth subtropical forest: A 26-yr study

The detection and attribution of biodiversity change is of great scientific interest and central to policy effects aimed at meeting biodiversity targets. Yet, how such a diverse climate scenarios influence forest biodiversity and composition dynamics remains unclear, particularly in high diversity systems of subtropical forests. Here we used data collected from the permanent sample plot spanning 26 years in an old-growth subtropical forest. Combining various climatic events (extreme drought, subsequent drought, warming, and windstorm), we analyzed long-term dynamics in multiple metrics: richness, turnover, density, abundance, reordering and stability. We did not observe consistent and directional trends in species richness under various climatic scenarios. Still, drought and windstorm events either reduced species gains or increased species loss, ultimately increased species turnover. Tree density increased significantly over time as a result of rapid increase in smaller individuals due to mortality in larger trees. Climate events caused rapid changes in dominant populations due to a handful of species undergoing strong increases or declines in abundance over time simultaneously. Species abundance composition underwent significant changes, particularly in the presence of drought and windstorm events. High variance ratio and species synchrony weaken community stability under various climate stress. Our study demonstrates that all processes underlying forest community composition changes often occur simultaneously and are equally affected by climate events, necessitating a holistic approach to quantifying community changes. By recognizing the interconnected nature of these processes, future research should accelerate comprehensive understanding and predicting of how forest vegetation responds to global climate change.

Herbicide application impacted soil microbial community composition and biochemical properties in a flooded rice field

Herbicide application is a common practice in intensive agriculture. However, accumulating herbicide residues in the ecosystem affects important soil attributes. The effect of two herbicides, pendimethalin and pretilachlor, on soil biochemical properties and microbial community composition was studied in a transplanted paddy field. Results reveal a gradual decline in herbicide residue up to 60 days after application. Changes in soil microbiological and biochemical properties (microbial biomass, enzymes, respiration, etc.) showed an inconsistent pattern across the treatments. Quantitative polymerase chain reaction analysis showed the archaeal, bacterial and fungal populations to be of higher order in control soil compared to the treated one. Amplicon sequencing (16S rRNA and ITS genes) exhibited that besides the unclassified genera, ammonia-oxidizing Crenarchaeota and the group represented by Candidatus Nitrososphaera were dominant in both the control and treated samples. Other archaeal genera viz. Methanosarcina and Bathyarchaeia showed a slight decrease in relative abundance of control (0.5 %) compared to the treated soil (0.7 %). Irrespective of treatments, the majority of bacterial genera comprised unclassified and uncultured species, accounting for >64–75 % in the control group and over 78.29 % in the treated samples. Members of Vicinamibacteraceae, Bacillus and Bryobacter were dominant in control samples. Dominant fungal genera belonging to unclassified groups comprised Curvularia, Aspergillus, and Emericellopsis in the control group, whereas Paraphysoderma and Emericellopsis in the herbicide-treated groups. Inconsistent response of soil properties and microbial community composition is evident from the present study, suggesting that the recommended dose of herbicides might not result in any significant change in microbial community composition. The findings of this investigation will help in the formulation of a framework for risk assessment and maintaining sustainable rice cultivation in herbicide- amended soils.

Linking Resource Quality and Biodiversity to Benthic Ecosystem Functions Across a Land-to-Sea Gradient

Benthic macrofauna modifies carbon and nutrient retention and recycling processes in coastal habitats. However, the contribution of benthic consumers to carbon and nutrient storage and recycling shows variation over spatial scales, as the benthic community composition changes in response to differences in environmental conditions. By sampling both shallow sandy and deep muddy sediments across a land-to-sea gradient in the northern Baltic Sea, we explored if benthic community composition, stoichiometry and process rates change in response to alterations in environmental conditions and food sources. Our results show that benthic faunal biomass, C, N, and P stocks, respiration rate and secondary production increase across the land-to-sea gradient in response to higher resource quality towards the open sea. The seston δ13C indicated terrestrial runoff and δ15N sewage input at the innermost study sites, whereas more fresh marine organic matter towards the open sea boosted benthic faunal carbon storage, respiration rate, and secondary production, that is, the generation of consumer biomass, which are essential processes for carbon turnover in this coastal ecosystem. Also, biological factors such as increasing species richness and decreasing biomass dominance of the clam Macoma balthica were significant in predicting benthic faunal C, N, and P stocks and process rates, especially at sandy sites. Interestingly, despite the variation in food sources, the benthic faunal C:N:P ratios remained stable across the gradient. Our results prove that human activities in the coastal area can influence the important links between biodiversity, structure, and process rates of benthic communities by modifying the balance of available resources, therefore hampering the functioning of coastal ecosystems.

A mismatch between community assembly and abundance‐based diversity indices

Long‐term ecological studies have consistently reported slower than expected changes in biodiversity over time. One explanation for this phenomenon is that commonly used diversity measurements such as species richness are too coarse to detect mechanisms shaping community assembly. Theory suggests that similar phenomena may occur in abundance‐based diversity measurements, but the extent of this problem is currently unclear. We confront this theoretical prediction with field data by studying temporal changes in abundance‐based diversity indices across 3341 observations from 880 plots in 15 long‐term vegetation plot studies. We then partition diversity change into mechanisms of interest to ecologists: selection, drift, and immigration. We show that these resulting changes in relative abundances often produce non‐linear changes in diversity. These non‐linearities lead counterintuitive effects that are easy to miss when directly analysing changes in diversity. To resolve this we show that explicit partitioning of diversity change leads to one further, less‐studied partition: ‘rarity shifts'. Rarity shifts measure how an individual's contributions to diversity changes over time. These rarity shifts are responsible for counter‐intuitive effects, for example when radical changes in community composition lead to negligible changes in diversity. We found rarity shifts are an important component of diversity change across many studies. Furthermore, rarity shifts tend to oppose selection, drift and immigration. Therefore, rarity shifts explain why changes in relative abundance do not consistently result in changes in abundance‐based diversity measurements. Ultimately, using rarity shifts can lead to a more accurate understanding of the temporal rate and nature of diversity change in ecology and conservation.

Effects of storage conditions on the microbiota of fecal samples collected from dairy cattle.

Microbiota analyses are key to understanding the bacterial communities within dairy cattle, but the impact of different storage conditions on these analyses remains unclear. This study sought to examine the effects of freezing at -80°C immediately after collection, refrigeration at 4°C for three days and seven days and absolute ethanol preservation on the microbiota diversity of pooled fecal samples from dairy cattle. Examining 16S rRNA gene sequences, alpha (Shannon, Pielou evenness, observed features and Faith PD indices) and beta (Bray-Curtis, βw and Weighted UniFrac) diversity were assessed. The effects of storage conditions on these metrics were evaluated using linear mixed models and PERMANOVA, incorporating the farm as a random effect. Our findings reveal that 7d and E significantly altered the Shannon index, suggesting a change in community composition. Changes in Pielou evenness for 3d and 7d storage when compared to 0d were found, indicating a shift in species evenness. Ethanol preservation impacted both observed features and Faith PD indices. Storage conditions significantly influenced Bray-Curtis, βw, and Weighted UniFrac metrics, indicating changes in community structure. PERMANOVA analysis showed that these storage conditions significantly contributed to microbiota differences compared to immediate freezing. In conclusion, our results demonstrate that while refrigeration for three days had minimal impact, seven days of refrigeration and ethanol preservation significantly altered microbiota analyses. These findings highlight the importance of sample storage considerations in microbiota research.

The importance of habitat type and historical fire regimes in arthropod community response following large-scale wildfires.

Novel wildfire regimes are rapidly changing global ecosystems and pose significant challenges for biodiversity conservation and ecosystem management. In this study, we used DNA metabarcoding to assess the response of arthropod pollinator communities to large-scale wildfires across diverse habitat types in California. We sampled six reserves within the University of California Natural Reserve System, each of which was partially burned in the 2020 Lightning Complex wildfires in California. Using yellow pan traps to target pollinators, we collected arthropods from burned and unburned sites across multiple habitat types including oak woodland, redwood, scrub, chamise, grassland, forest, and serpentine habitats. We found no significant difference in alpha diversity values between burned and unburned sites; instead, seasonal variations played a significant role in arthropod community dynamics, with the emergence of plant species in Spring promoting increased pollinator richness at all sites. When comparing all sites, we found that burn status was not a significant grouping factor. Instead, compositional differences were largely explained by geographic differences, with distinct communities within each reserve. Within a geographic area, the response of arthropods to fire was dependent on habitat type. While communities in grasslands and oak woodlands exhibited recovery following burn, scrublands experienced substantial changes in community composition. Our study highlights the importance of examining community responses to wildfires across broad spatial scales and diverse habitat types. By understanding the nuanced dynamics of arthropod communities in response to fire disturbances, we can develop effective conservation strategies that promote resilience and maintain biodiversity in the face of increasing wildfire frequency and severity driven by climate change.

Soil microbial community structure and soil fertility jointly regulate soil microbial residue carbon during the conversion from subtropical primary forest to plantations

Soil microbes mediate soil organic carbon (SOC) storage by affecting microbial residue carbon (C) in terrestrial ecosystems, a main source of SOC. However, how microbial residue C accumulation changes during the conversion of subtropical primary forest to plantations and the role of soil microbial community structure in regulating these changes remain unclear. Here, effects of conversion from forest on microbial residue C accumulation in three plantations, including tea (Camellia sinensis var. assamica), walnut (Juglans regia), and macadamia (Macadamia integrifolia). We assessed amino sugars content and the relative importance of soil microbial community structure, soil fertility, and aboveground biomass in four forest types in southwest Yunnan province, China. Our results show that total microbial residue C accounted for 27.8 % of SOC on average across all forest types, and fungal residue C contributed more to SOC than bacterial residue C across different forest types. Conversion from primary forest decreased fungal, bacterial, and total microbial residue C content in all plantation types except tea. Microbial residue C contents was significantly lower in the macadamia plantation than in the primary forest and the tea plantation. Fungal and total microbial residue C content increased with increasing soil microbial community composition, soil fungal abundance, and soil fertility. Soil fertility regulated fungal, bacterial, and total microbial residue C accumulation, which was major determinant of microbial residue C via its influence on soil fungal and bacterial abundance. Overall, we found that soil fungal abundance contributed more to microbial residue C accumulation than change in soil microbial community composition. We also found that soil bacterial abundance was negatively correlated with fungal and microbial residue C, while soil fungal abundance was positively related to microbial residue C accumulation. Ascomycota was most important phylum regulating microbial residue C. These findings suggest that soil fungal and bacterial abundance and soil fertility are the principal regulators of microbial residue C accumulation during the conversion from primary forest to different plantations.

Native herbivore browsing alters plant physical and chemical traits in a eucalypt forest understory

AbstractMacropods exhibit selective herbivory on plant traits within and between species and hence can alter plant trait variation. In this study, we asked what are the effects of macropod herbivory on intraspecific variation in plant traits of forest understory species? We tested the effects of herbivory by macropods on eight plant traits, in nine understory species using a herbivore exclusion experiment. Generalized linear mixed models were used to test for differences between herbivory treatments in trait means as well as variation within species and at the community level. Macropod herbivory resulted in differences in either the mean trait value or trait variance within a species for seven of the eight tested plant traits. Macropod exclusion resulted in larger dimensions of size for most species, as well as changes in specific leaf area, moisture content, and carbon content of leaves. Further, community‐weighted means of specific leaf area, moisture content, and leaf nitrogen were lower in the presence of macropods. Plant trait variance was altered for three of the seven community‐weighted traits. This study demonstrates a mechanism through which macropods can drive changes in the traits of understory plant species. Plant traits have been linked to various larger scale ecological processes including ecosystem flammability, nutrient cycling, response to global change, and habitat suitability for other organisms. Therefore, herbivore‐induced changes in plant trait variation and community composition could have important flow‐on effects for other environmental processes and hence should be considered in management decisions regarding fire‐prone ecosystems.

Lianas shift towards larger sizes and more acquisitive trait values in an Asian tropical rainforest

AbstractGlobal change is impacting forests worldwide, leading to shifts in forest dynamics and functional composition. We evaluated the changes in the liana community and trait composition over a five‐year period (2014–2019) in a Chinese tropical rainforest and assessed the underlying putative mechanisms. We monitored >20,000 lianas in a 20‐ha plot, and analyzed community changes for each of the 20 1‐ha plots. To identify the putative drivers underlying community change, we used community‐weighted mean (CWM) trait values of 18 functional traits that are important for liana performance. During the 5‐year period, liana density decreased by 12.6% because of the high mortality of small lianas, whereas liana basal area increased by 5.8% because of the high growth of large lianas. After 5 years, liana communities showed a shift in trait values indicating that they changed towards more large, acquisitive lianas with rapid water use. The temporal shift from slow to fast community trait spectra in carbon, nutrient, and water use was also supported by shifts in the individual CWM traits, from conservative tough leaves towards more acquisitive and water‐spending leaves with higher K concentration, leaf thickness, and vessel diameter. Overall, we found no support for a role of disturbances or drought as drivers of the observed changes in the studied liana community. Instead, our study implies that CO2 fertilization should be considered to better understand dynamics in liana communities in tropical forests.Abstract in Chinese is available with online material.

Maize residue retention shapes soil microbial communities and co-occurrence networks upon freeze-thawing cycles.

Maize residue retention is an effective agricultural practice for improving soil fertility in black soil region, where suffered from long freezing-thawing periods and intense freeze-thawing (FT) cycles. However, very few studies have examined the influence of maize residue retention on soil microbial communities under FT cycles. We investigated the response of soil microbial communities and co-occurrence networks to maize residue retention at different FT intensities over 12 cycles using a microcosm experiment conditioned in a temperature incubator. Our results indicated that maize residue retention induced dramatic shifts in soil archaeal, bacterial and fungal communities towards copiotroph-dominated communities. Maize residue retention consistently reduced soil fungal richness across all cycles, but this effect was weaker for archaea and bacteria. Normalized stochastic ratio analysis revealed that maize residue retention significantly enhanced the deterministic process of archaeal, bacterial and fungal communities. Although FT intensity significantly impacted soil respiration, it did not induce profound changes in soil microbial diversity and community composition. Co-occurrence network analysis revealed that maize residue retention simplified prokaryotic network, while did not impact fungal network complexity. The network robustness index suggested that maize residue retention enhanced the fungal network stability, but reduced prokaryotic network stability. Moreover, the fungal network in severe FT treatment harbored the most abundant keystone taxa, mainly being cold-adapted fungi. By identifying modules in networks, we observed that prokaryotic Module #1 and fungal Module #3 were enhanced by maize residue retention and contributed greatly to soil quality. Together, our results showed that maize residue retention exerted stronger influence on soil microbial communities and co-occurrence network patterns than FT intensity and highlighted the potential of microbial interactions in improving soil functionality.

Temporal variability on Seagrass Cover and Species Composition in a Tourism Hotspot: A case study in Derawan Island

Seagrass ecosystems in Derawan Island provide crucial services to coastal communities, including serving as a food source for sea turtles. However, like many coastal areas, seagrass ecosystem in Derawan Island faces significant challenges. One major issue is related to tourism, which affects seagrass both through land use changes for tourism development and through various tourism activities. This study aims to assess the resilience of the seagrass ecosystem on Derawan Island by examining temporal variability in seagrass cover and community structure. Permanent plots were established to monitor changes in seagrass cover and community composition. The observations were conducted following the SeagrassWatch method. Data were collected three times, in September 2018, March 2019, and August 2019. Seagrass cover during 3 times monitoring showed fluctuate trend (averaging 42.3%, 33.2%, and 32.3%, respectively). Pioneer species such as H. pinifolia dominated the seagrass meadow, maintaining a consistently higher cover compared to other species. Conversely, the species T. hemprichii was observed at lower levels, likely due to overgrazing by sea turtles, which may have prevented its recovery. This study provides valuable insights into the status and resilience of seagrass ecosystems in a tourism hotspot and offers information that could be useful for managing seagrass ecosystem on Derawan Island.

Using a combination of phospholipid fatty acids profiles and DNA-based sequencing analyses to detect shifts in the biofloc microbial community in different carbon sources and carbon/nitrogen ratios.

A 35-day study investigated the impact of carbon sources and carbon/nitrogen (C/N) ratios on the microbial community of biofloc. For this purpose, we utilized a combination of phospho-lipid fatty acids (PLFAs) profiles and DNA-based sequencing methods to investigate changes in the microbial community composition and structure. The experiment involved three carbon sources including Dextrin (DEX), corn starch (CS) and wheat bran (WB) at two C/N ratios (19 and 30). The results indicated that WB and CS were found to decrease nitrogen metabolite concentration while increasing total suspended solids and bacterial density compared to DEX. The treatments exhibited variations in microbial communities and the use of polymerase chain reaction/ denaturing gradient gel electrophoresis analysis revealed distinct dominant bacterial species linked to carbon sources and C/N ratios. Furthermore, the highest levels of bacteria and protozoa PLFAs biomarkers were observed in the C/N30 ratio and WB treatment while the ratio for poly-β-hydroxybutyrate/PLFAs and fungi biomarkers displayed a decrease. Also, by incorporating the results of PLFAs profile and conducting a principal component analysis, the treatments were categorized into distinct groups based on both the carbon source and C/N ratios. Overall, both methods yield consistent results. PLFAs offered additional insights into the microbial composition beyond bacterial structure while DNA-based analysis provided finer taxonomic resolution.

Changes in the Microbial Community Associated with the Large Benthic Foraminifera Cycloclypeus Carpenteri, Along a Depth Gradient

Abstract Cycloclypeus carpenteri is one of the deepest living large benthic foraminifera. It has an obligatory relationship with diatom photosymbionts, and, in addition, houses a diverse prokaryotic community. Variations in the eukaryotic and prokaryotic endobiotic community composition might be key in allowing Cycloclypeus to occur in low light environments. We assessed the variability of the prokaryotic and eukaryotic communities associated with Cycloclypeus along a depth gradient from 50 to 130 m at two locations in the Federated States of Micronesia (Northwest Pacific) by metabarcoding of the 18S V9 rRNA region for eukaryotes and the 16S V3-V4 rRNA region for prokaryotes. We observed a single foraminiferal operational taxonomic unit (OTU), as well as a single dominant diatom OTU that was abundant in all sequenced specimens. Both the prokaryotic and the eukaryotic endobiotic communities (excluding the dominant diatom) changed with water depth and associated irradiance levels. We observed a distinct change in the prokaryotic community composition around 90–100 m water depth at Pohnpei, equivalent to ∼1% surface radiation. This change in microbial communities in the Cycloclypeus holobiont suggests a potential role of the associated microbial communities in accommodating differences in (micro)habitat, although we cannot exclude that the prokaryote community is to a large extent driven by their community composition in the ambient environment.

Spatial patterns of benthic diatom community structure in the largest northwestern river of Cambodia (Sangker River)

To date, very little is known about the relative importance of physicochemical factors structuring the benthic diatom community in the flood-pulse tropical ecosystems. This paper aims to investigate the spatial distribution of the benthic diatom community in a poorly studied river catchment of the Tonle Sap Basin in Cambodia. Diatom samples were collected at nineteen (19) monitoring sites from 2018 to 2023 along the Sangker River, and the hierarchical clustering technique was applied to characterize the variation in diatom community structure based on the similarity of diatom genera composition. Seventy-eight (78) diatom genera belonging to 36 families, 18 orders, and 5 classes of diatom flora were recorded. Gomphonema Ehrenberg, Nitzschia Hassall, and Navicula Bory were the most dominant diatom genera in the catchment area. Accordingly, three main diatom assemblages (Ia, Ib, and II) were classified, and 11 indicator genera were identified. Indeed, the identified assemblages reflect the change of diatiom community composition from the upstream assemblage (Ia), middle course (Ib), and floodplain assemblage (II). Dissolved oxygen (DO), pH, conductivity (EC), total phosphorus (TP), and silicon dioxide (SiO2) were the physico-chemical determinants of benthic diatom communities, while physical factors (DO, pH, and nutrients) seemed to be more important than chemical factors. Consequently, any disturbances to the physical condition of the river would drive an abrupt shift in the diatom community’s diversity and structure. These findings pave an essential step towards the establishment of sustainable biomonitoring programs in developing countries such as Cambodia to protect aquatic ecosystems from global change.