Chain Length Factor Research Articles

A polyketide-synthase-like gene is involved in the synthesis of heterocyst glycolipids in Nostoc punctiforme strain ATCC 29133.

A Tn5-1063-derived mutant of Nostoc punctiforme strain ATCC 29133 was unable to fix N2 in air although it reduced acetylene in the absence of O2. Mutant strain UCD 307 formed cells morphologically similar to heterocysts, but it failed to synthesize the characteristic heterocyst glycolipids. Sequence analysis around the site of insertion revealed an ORF of 3,159 base pairs, termed hglE. hglE putatively encodes a 115.4-kDa protein containing two domains with conserved amino acid sequences identified with acyl transferase and the chain length factor variation of beta-ketoacyl synthase active sites. These active sites are characteristic of polyketide and fatty acid synthases. The N. punctiforme strain 29133 hglE gene is transcribed only under nitrogen-limiting growth conditions. The hglE gene, or similar sequences, was found in all other heterocyst-forming cyanobacteria surveyed and was absent in unicellular Synechococcus sp. strain PCC 7942. Based on these results, we propose that the synthesis of heterocyst glycolipids follows a pathway characteristic of polyketide synthesis and involves similar large, multienzyme complexes.

Deciphering the biosynthetic origin of the aglycone of the aureolic acid group of anti-tumor agents.

Mithramycin, chromomycin, and olivomycin belong to the aureolic acid family of clinically important anti-tumor agents. These natural products share a common aromatic aglycone. Although isotope labeling studies have firmly established the polyketide origin of this aglycone, they do not distinguish between alternative biosynthetic models in which the aglycone is derived from one, two or three distinct polyketide moieties. We set out to determine the biosynthetic origin of this moiety using a recombinant approach in which the ketosynthase and chain-length factor proteins from the antibiotic-producer strain, which determine the chain length of a polyketide, are produced in a heterologous bacterial host. The ketosynthase and chain-length factor genes from the polyketide synthase gene cluster from the mithramycin producer, Streptomyces argillaceus ATCC 12956, and the acyl carrier protein and ketoreductase genes from the actinorhodin polyketide synthase were expressed in Streptomyces coelicolor CH999. The recombinant strain produced a 20-carbon polyketide, comprising the complete backbone of the aglycone of mithramycin. The aglycone moieties of mithramycin, chromomycin, and olivomycin are derived from a single polyketide backbone. The nascent polyketide backbone must undergo a series of regiospecific cyclizations to form a tetracenomycin-like tetracyclic intermediate. The final steps in the aglycone biosynthetic pathway presumably involve decarboxylation and oxidative cleavage between C-18 and C-19, followed by additional oxidation, reduction, and methylation reactions.

Characterization of Streptomyces argillaceus genes encoding a polyketide synthase involved in the biosynthesis of the antitumor mithramycin

Mithramycin (Mtm) is an aromatic polyketide which shows antibacterial and antitumor activity. From a chromosomal cosmid library of Streptomyces argillaceus, a Mtm producer, a clone (cosAR7) was isolated by homology to the actI/III region of S. coelicolor and the strDEM genes of S. griseus. From this clone, a 5.3-kb DNA region was sequenced and found to encode six open reading frames (designated as mtmQXPKSTI), five of them transcribed in the same direction. The deduced products of five of these genes resembled components of type-II polyketide synthases. The mtm genes would code for an aromatase ( mtmQ), a polypeptide of unknown function ( mtmX), a β-ketoacylsynthase ( mtmP) and a related ‘chain length factor’ ( mtmK), an acyl carrier protein ( mtmS) and a β-ketoreductase ( mtmT1). The involvement of this gene cluster in Mtm biosynthesis was demonstrated by the Mtm non-producing phenotype of mutants generated in two independent insertional inactivation experiments.

Cloning and characterization of a polyketide synthase gene from Streptomyces fradiae Tü2717, which carries the genes for biosynthesis of the angucycline antibiotic urdamycin A and a gene probably involved in its oxygenation

A DNA fragment was cloned as cosmid purd8, which encodes a polyketide synthase involved in the production of the angucycline antibiotic urdamycin from Streptomyces fradiae Tü2717. Deletion of the polyketide synthase genes from the chromosome abolished urdamycin production. In addition, purd8 conferred urdamycin resistance on introduction into Streptomyces lividans TK24. Sequence analysis of 5.7 kb of purd8 revealed six open reading frames transcribed in the same direction. The deduced amino acid sequences of the six open reading frames strongly resemble proteins from known type II polyketide synthase gene clusters: a ketoacyl synthase, a chain length factor, an acyl carrier protein, a ketoreductase, a cyclase, and an oxygenase. Heterologous expression of the urdamycin genes encoding a ketoacyl synthase and a chain length factor in Streptomyces glaucescens tetracenomycin C-nonproducing mutants impaired in either the TcmK ketoacyl synthase or TcmL chain length factor resulted in the production of tetracenomycin C. Heterologous expression of a putative oxygenase gene from the urdamycin gene cluster in S. glaucescens GLA.O caused production of the hybrid antibiotic 6-hydroxy tetracenomycin C.

Ectopic expression of the Streptomyces coelicolor whiE genes for polyketide spore pigment synthesis and their interaction with the act genes for actinorhodin biosynthesis

The whiE gene cluster of Streptomyces coelicolor is normally expressed shortly before sporulation in the aerial mycelium, leading to production of the grey polyketide spore pigment. By placing the whiE genes under the control of the thiostrepton-inducible tipA promoter, they were artificially expressed on plasmids or in the chromosome during vegetative growth in a strain deleted for the act genes, which control biosynthesis of the polyketide antibiotic actinorhodin. Certain combinations of whiE-ORFI-VII led to production of mycelial pigments; these were exported into the medium when whiE-ORFI was absent, but poorly in its presence. Combined with comparative sequence data, the results allowed deductions to be made, or confirmed, about the normal roles of the eight known genes, whiE-ORFI-VIII, as follows: whiE-ORFIII, IV, V encode the three components (ketosynthase, chain length factor and acyl carrier protein) of the whiE 'minimal' polyketide synthase (PKS) needed for assembly of the carbon chain of the spore pigment precursor; whiE-ORFII, VI, VII are likely to be involved in cyclizations of the nascent carbon chain; whiE-ORFVIII controls a late step in the spore pigment biosynthetic pathway, probably a hydroxylation; and whiE-ORFI may encode a protein needed for correct targeting or retention of spore pigment at an appropriate cellular location. In other experiments, genes encoding components of the act-PKS and whiE-PKS were artificially co-expressed. Each of the three whiE minimal PKS subunit genes could complement lesions in the corresponding act-PKS genes to produce actinorhodin or related mycelial pigments, and each of the three act minimal PKS genes could complement lesions in the whiE minimal PKS genes to cause spore pigmentation. Thus the two sets of PKS subunits, which are encoded by genes that have presumably diverged from a common ancestor, are still capable of biochemical 'cross-talk', but this is normally prevented because the gene sets are expressed in different 'tissues' of the differentiated Streptomyces colony. Ectopic expression of sets of whiE-PKS genes presumed to be sufficient to assemble a carbon chain caused inhibition of early growth of the strains, perhaps by causing interference with fatty acid biosynthesis; this yielded circumstantial evidence that the whiE-PKS gene products can also interact with those of the fatty acid synthase(s) of the organism.

Effect of lipidic factors on membrane cholesterol topology — mode of binding of θ-toxin to cholesterol in liposomes

We have previously suggested the existence of two distinct states for cholesterol in cell membranes as revealed by high- and low-affinity binding sites for θ-toxin of Clostridium perfringens. In liposomes, phospholipid and cholesterol compositions, but not membrane protein composition, have been shown to be major determinants for the topology of membrane cholesterol. The effects of lipidic factors on cholesterol topology were investigated in detail by analyzing toxin binding to large unilamellar liposomes composed of cholesterol and phospholipids (neutral phospholipids/phosphatidylglvcerol = 82:18, mol/mol). The numbers of high- and low-affinity toxin-binding sites depend strictly on the cholesterol mole percentage in liposomes. High-affinity toxin-binding sites appear only in liposomes with high cholesterol contents. Liposomes whose cholesterol/phospholipid ratio is 0.4 or less have no high-affinity sites regardless of their phospholipid compositions, while low-affinity sites appear in liposomes with lower cholesterol contents. The threshold values for the cholesterol mole percentage above which high-affinity toxin-binding sites appear were examined. The values decrease in accordance with the increase in the mole fraction of 18-carbon hydrocarbon chains among the total 14–18 carbon-hydrocarbons chains of the liposomal phospholipids. Furthermore, both the partial replacement of phosphatidylcholine with phosphatidylethanolamine and the digestion of phospholipids with phospholipase C also affect the threshold values. Thus the cholesterol mole percentage, in combination with phospholipid chain length and other factors, determines the topology of membrane cholesterol providing distinctively different affinity sites for θ-toxin.

Formation of Through-Ring α-Cyclodextrin Complexes with α,ω-Alkanedicarboxylate Anion.Effects of the Aliphatic Chain Length and Electrostatic Factors on the Complexation Behavior

Abstract α,ω-Alkanedicarboxylic acid anions with a long spacer methylene chain were observed to form dynamically and statically stable complexes with α-cyclodextrin (α-CD) at an NMR time scale in both neutral and basic media. The structures of these complexes were confirmed to be a “through-ring” type CD complex by measurements of the intermolecular NOESY and NOE difference spectra. From the thermodynamic data in basic media (pD 13), the dynamical stability of these type complexes were attributed not to the steric interaction, but to an electrostatic interaction between the dicarboxylate anion and ionized-CD.