Here, we report the electrostatic potential maxima and partial atomic charges evaluated on cetylpyridinium cation. The Hartree-Fock method and six DFT functionals (namely, PBE, TPSS, B3LYP, PBE0, M06, and wB97) were used to calculate partial atomic charges via CHELPG, Mulliken, Löwdin, Hirshfeld, and natural population schemes. Calculations were performed for the gas phase and for the CPCM water solvated cation, resulting in a set of 70 types of partial atomic charges. The main tendencies in charge deviations were discussed. In comparison with the electrostatic potential-based CHELPG partial charges, Hirshfeld, Mulliken, Löwdin, and NPA partitioning schema lead to an almost steady decrease in the partial charges in the cetyl chain. This agreed closely with the redistribution of electrostatic potential mapped onto the 0.002 e/Bohr3 isodensity surface.