Aspergillus and Penicillium species and their mycotoxins, including aflatoxins, ochratoxins, fumonisins and patulin, are frequently encountered on cereal products. The occurrence of these species and their mycotoxins on maize was investigated in Hungary after harvest in two consecutive years. Surface-sterilized cereal seeds were placed on selective media, and the isolated fungal strains were identified using morphological methods. In 2010 and 2011, 81.94% and 14.33%, respectively, of the samples were found to be contaminated with potentially toxigenic isolates. The species identification of selected isolates was carried out using sequence-based methods. Several Aspergillus flavus isolates were identified, which are potential aflatoxin producers. Other mycotoxinproducing species were also isolated, including black Aspergilli, which potentially produce ochratoxins and fumonisins, and A. clavatus, which produces patulin. In 2010 a large number of Penicillium species occurred in the samples, producing a wide range of mycotoxins. The mycotoxin content of the samples was analysed using the ELISA and HPLC techniques. Aflatoxins were not detected in any of the samples, while ochratoxins and fumonisins were successfully identified in some of the maize seeds.