ObjectivesTo assess the frequency of the novel NaHCO3-responsive phenotype, wherein clinical methicillin-resistant Staphylococcus aureus (MRSA) isolates are rendered susceptible to standard-of-care β-lactams in the presence of NaHCO3, in a collection of 103 clinical US MRSA skin and soft tissue infection (SSTI) isolates and 22 clinical European SSTI isolates. Determined the correlation between specific phenotypic and genotypic metrics and the NaHCO3-responsive phenotype among US SSTI isolates. MethodsAntimicrobial susceptibility testing (AST) was performed to determine susceptibility phenotypes. Targeted and whole genome sequencing (WGS) with a genome-wide sequence analysis (GWAS) were conducted to identify specific and novel genotypes of interest that may be associated with the NaHCO3-responsive phenotype. Gene expression analysis and targeted gene deletion were performed to assess the role of a specific novel genetic locus in the NaHCO3-responsive phenotype. ResultsThe NaHCO3-responsive phenotype was identified in 78/103 US isolates and 4/22 UK isolates to cefazolin (CFZ), and in 17/103 US isolates and 1/22 UK isolates to oxacillin (OXA). In US isolates, a significant association was identified between NaHCO3-responsiveness to CFZ and: i) susceptibility to amoxicillin-clavulanate; ii) a specific mecA genotype; iii) clonal complex (CC) type 8; and iv) spa type t008. GWAS identified SNPs in an AraC family regulator (SAUSA300_RS00540) to be exclusively found in NaHCO3-non-responsive SSTI strains. In vitro HCO3 exposures of NaHCO3-responsive strains, but not -non-responsive strains, caused >2-fold up-regulated expression of this gene. Deletion of this gene rendered NaHCO3-responsive strain MRSA 11/11 no longer NaHCO3-responisve to CFZ; we have termed this gene the staphylococcal AraC bicarbonate-response regulator, sabR. ConclusionsNaHCO3-responsiveness is highly associated with CC8/spa t008, a commonly circulating genetic background in North America. The AraC bicarbonate-response regulator, sabR, appears to be associated with the mechanism of NaHCO3-responisveness, more work is needed to verify. Word count 288.
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