Filtered Geomorphic Reference Models (FGRMs), extracted from High-Pass Filters based on the Fast Fourier Transform (HPF-FFT), provide a semi-automated and objective detection of a wide range of geoforms and geomorphic situations (flat areas, slopes, depressions, or valley bottoms). The method is sensitive enough to reveal numerous inflection points that enable the identification of subtle changes in relief polarity, resulting in accurate representations of real land depressions. The effectiveness of this method has been demonstrated in lunar landscapes, utilizing altimetry extracted from high-precision Planetary Digital Elevation Models (PDEMs) to construct crater inventories with well-defined FGRMs. However, when analysing lunar environments with closely-spaced geomorphic features, the FGRMs display blurring and generalization effects, reducing their capability to identify all existing crater depressions. This limitation controls the ability of FGRMs, to generate reliable crater inventories. This study examines such effects in three experiments. Using Synthetic Digital Relief Models (SDRMs) constructed by means of a MATLAB script two experiments are performed. In Experiment_1 different scenarios of proximity between aligned craters are analysed. The marks, or footprints, formed by craters of identical size and shape (i.e., circular bowl-shaped depressions with central peaks) are considered, resulting in simplified PDEMs. Various scenarios of crater centre separation (proximity) and the presence of internal features within craters are also analysed. Experiment_2 validates the method with different proximities, locations and crater sizes. Experiment_3 validates the approach in a sampled area of LRO lunar PDEM corresponding to Zelinskiy crater (Mare Ingenii area). To address these blurring effects, a hybrid methodology is employed, generating FGRMs extracted from HPF-FFT, in conjunction with other GIS and remote sensing tools, such as singular point zoning, aspect-slope zoning, and edge-limits zoning. As a result, the correspondence between the FGRMs and the synthetic forms is examined, aiding the comprehension of the graphical response provided by filtering in these cratered areas. The methodology demonstrates that FGRMs derived from HPF-FFT are sensitive to capturing connections between shapes as soon as the crater features start to merge, while blurring becomes evident when the craters are located at a proximity of <20 model units. Additionally, the results highlight the method's utility in accurately locating crater footprints and morphologically characterizing inner crater features, even when crater centres are closely spaced. This approach effectively mitigates blurring effects and enables the precise localization of crater marks and their internal features. The validations carried out in complex relief and high precise DEMs provide a use in real situation.