Type 1 narcolepsy is characterized by sleepiness, REM sleep abnormalities and loss of muscle tone triggered by positive emotions (cataplexy). The cause of type 1 narcolepsy is a loss of neurons producing the hypocretin/orexin peptide likely of autoimmune origin. Our aim was to discover novel genetic variants in narcolepsy and fine map the potentially causative variants using our transethnic sample and cellular models. A worldwide narcolepsy collaboration was built over the last two decades. Within this consortium, we examined genetic variants using a transethnic GWAS in Asian, African American and Caucasian samples (N=5,500 cases and 30,000 controls). The function of leading variants was examined using eQTL analysis in dendritic and T cell models, data from the ENCODE and GTEx consortiums and by examining the effect of individual variants on flu vaccination response. In addition the effect of genetic variants on immune cell development was examined using mass cytometry. We confirmed existing risk associations (TRA, TRB, IFNAR1, CTSH and P2RY11) and discovered novel loci that predisposed individuals to narcolepsy in CD207, SIRPG, PPP2R2C, ZFAND2A, FLT3, LPP and PRF1. Fine mapping of association suggests a functional polymorphism in position A91V in PRF1, a variant that is directly affecting T and NK cell mediated cell killing. Furthermore, leading variant in IFNAR1 affected IFNAR1 expression after flu infection in dendritic cells suggesting causality for the development of narcolepsy through changes in dendritic cell phenotype. The results further stress the effect of T cell-dendritic cell interactions in the development of narcolepsy and find causal disease pathways. The novel loci may explain how hypocretin cells are destroyed and support a T cell mediated autoimmune attack in narcolepsy susceptibility. World Wide Narcolepsy Consortium, European Narcolepsy Network, Sigrid Juselius Foundation, Finnish Cultural Foundation.
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