Simple SummaryThe research aimed to determine the content of lead (Pb), cadmium (Cd), and mercury (Hg) in water, sediment, and freshwater fish species roach (Rutilus rutilus), perch (Perca fluviatilis), and pike (Esox lucius) from the Dratów, Syczyńskie, and Czarne Sosnowickie lakes located on Polesie Lubelskie, Poland, as well as a food safety assessment for the consumer. Pb and Cd were measured by graphite furnace atomic absorption spectrometry, while Hg was measured by cold vapor atomic absorption spectrometry. The research results showed that both the waters and the sediments of the studied lakes are characterised by a low concentration of Pb, Cd, and Hg, which indicates the lack of a moderate influence of anthropopressure on these reservoirs. The range of heavy metal contents in the muscles of roach, pike, and perch for Pb was 0.0399–0.1595, 0.0305–0.0920, and 0.0296–0.1057 mg kg−1, respectively; for Cd 0.0014–0.0095, 0.0010–0.0015, and 0.0020 mg kg−1, respectively; and for Hg 0.0123–0.0499, 0.0185–0.0255, and 0.0216–0.0583 mg kg−1, respectively. The content of heavy metals in fish muscles was low and conformed to requirements as defined in the European Union (EU) food legislation. The health risk assessment with regard to the heavy metal contents in the muscles of fish confirmed the safety of this food for consumers.Heavy metals are introduced into water due to anthropogenic activities and can significantly affect an entire ecosystem. Due to their close integration with the water environment, fish are a sensitive indicator of contamination. In addition, fish is an important element in human diets, therefore, monitoring the concentrations of metallic contaminants in their meat is particularly important for food safety. This study aimed to assess the pollution of water ecosystems with selected toxic heavy metals in lakes Dratów, Czarne Sosnowickie, and Syczyńskie. The concentration of Pb, Cd, and Hg in water, sediment, and freshwater fish muscle tissue was determined, and a food safety assessment was performed. The analysis of water and sediments showed that the sediments were characterised by a significantly higher concentration of heavy metals. Presumably, this ecosystem element plays an important role in the uptake of heavy metal contaminants by fish whose levels were higher in planktonophagous and benthophagous fish species as compared to predatory fish. The food safety assessment showed that amounts of heavy metals in the muscle tissue posed no threat to the health of consumers ingesting that fish species, neither individually (THQ) nor collectively (TTHQ).