Soil Carbon Source Research Articles

Effects of plastic film mulching on soil microbial carbon metabolic activity and functional diversity at different maize growth stages in cool, semi-arid regions

IntroductionPlastic film mulching has been widely used to enhance soil hydrothermal conditions and increase crop yields in cool, semi-arid areas. However, its impact on soil microbial carbon metabolic activity and functional diversity during plant growth remains unclear despite their important roles in nutrient cycling and soil quality evaluation.MethodsThis study used the Biolog EcoPlate technique to investigate the dynamics and driving factors of soil microbial carbon metabolic activity and functional diversity at different maize growth stages following plastic film mulching.Results and discussionThe results revealed that film mulching significantly increased microbial carbon metabolic activities [represented by average well color development (AWCD)] by 300% at the seedling stage and by 26.8% at maturity but decreased it by 47.4% at the flowering stage compared to the control (without mulching). A similar trend was observed for the microbial functional diversity index. Redundancy analysis identified soil moisture (SM), soil temperature (ST), dissolved organic carbon (DOC), microbial biomass carbon (MBC), and bacteria amounts as the primary factors influencing changes in soil microbial carbon source utilization. The mulch treatment significantly increased SM at all growth stages, while its warming effect disappeared at the flowering stage. Soil DOC, MBC, and bacterial populations were notably higher under mulching at the seedling and maturity stages but lower at the flowering stage. Pearson correlation analysis showed that changes in SM, ST, DOC, MBC, and bacterial populations positively correlated with the utilization of all carbon source classes, AWCD, and functional diversity indexes after film mulching. Furthermore, maize grain yield and water use efficiency increased by 142 and 129%, respectively, following film mulching. In conclusion, plastic film mulching enhanced soil microbial carbon metabolic activity and functional diversity at the seedling and maturity stages, improving crop yields in cool, semi-arid areas. Furthermore, the decrease in soil carbon metabolic capacity at flowering stage highlights that supplementing soil carbon sources should be considered after continuous film mulching to sustain or enhance farmland productivity and soil quality.

Microplastic coupled with soil dissolved organic matter mediated changes in the soil chemical and microbial characteristics

The abundance of microplastics (MPs) in soil environments has attracted significant attentions, due to their impact on soil physico-chemical properties. However, limited information is available on the influences of MPs on soil carbon composition and microbial utilization characteristics. Therefore, a two-month incubation experiment was conducted to add polyethylene microplastics (PE-MPs) with different levels (1%, 10%) and sizes (150–300 μm and 75–150 μm) into different soils. After that, soil chemical properties including the dissolved organic carbon (DOC), spectral characteristics of dissolved organic matter (DOM) and soil microbial characteristics were analyzed. Results revealed that PE-MPs addition caused significant differences in soil chemical properties between farmland and woodland soils, particularly in soil pH, DOM composition, and soil phosphatase activity. Woodland soil always exhibited higher levels of DOC content, microbial diversity, and soil carbon source utilization compared to farmland soil, leading to increased humification in the DOM of woodland soil. PE-MPs with a larger particle size significantly increased both the soil DOC content and enzyme activity. Addition of PE-MPs altered the soil DOM composition, and the fluorescence parameters like the biological index (BIX) and humification degree. Moreover, the carbon source utilization intensity of microorganisms on PE MPs-contaminated soils is higher in woodland soils. Various analyses confirmed that compared to other soil properties, characteristics of soil DOM had a more significant impact on soil microbial community composition. Thus, PE-MPs in conjunction with soil DOM spectral characteristics regulated soil microbial diversity, which is crucial for understanding soil carbon sequestration.

Nitrogen-fixing cyanobacteria enhance microbial carbon utilization by modulating the microbial community composition in paddy soils of the Mollisols region

Nitrogen-fixing cyanobacteria (NFC) are photosynthetic prokaryotic microorganisms capable of nitrogen fixation. They can be used as biofertilizers in paddy fields, thereby improving the rice tillering capacity and yield. To reveal the microbiological mechanisms by which nitrogen-fixing cyanobacteria alter soil carbon storage, we conducted a field experiment using NFC as a partial substitute for nitrogen fertilizer in paddy fields in the Sanjiang Plain of Northeast China's Mollisols region. Using metagenomic sequencing technology and Biolog Ecoplate™ carbon matrix metabolism measurements, we explored the changes in the soil microbial community structure and carbon utilization in paddy fields. The results indicated that the replacement of nitrogen fertilizer with NFC predisposed the soil microbial community to host a great number of copiotrophic bacterial taxa, and Proteobacteria and Actinobacteria were closely associated with the metabolism of soil carbon sources. Moreover, through co-occurrence network analysis, we found that copiotrophic bacteria clustered in modules that were positively correlated with the metabolic level of carbon sources. The addition of NFC promoted the growth of copiotrophic bacteria, which increased the carbon utilization level of soil microorganisms, improved the diversity of the microbial communities, and had a potential impact on the soil carbon stock. The findings of this study are helpful for assessing the impact of NFC on the ecological function of soil microbial communities in paddy fields in the black soil area of Northeast China, which is highly important for promoting sustainable agricultural development and providing scientific reference for promoting the use of algal-derived nitrogen fertilizers.

Soil Microbial Residual Carbon Accumulation Affected by Reclamation Period and Straw Incorporation in Reclaimed Soil from Coal Mining Area

Microbial residual carbon is an important component in soil carbon pool stability. Here, we tested soils collected from the early (first year, R1), middle (10 years, R10), and long-term (30 years, R30) stages of reclamation in a coal mining area in China. Two treatments with straw materials, namely maize straw + soil (S+M) and wheat straw + soil (S+W), were used for a decomposition experiment. The glucosamine and muramic acid contents were assessed. Accumulation of microbial residual C and its contribution to soil organic carbon (SOC) were analyzed at various intervals. Straw incorporation resulted in higher amino sugar accumulation than that of the control. The amino sugar content was considerably higher in R30 than that in R10 and R1; S+M and S+W showed average increases of 15 and 4%, respectively, compared to the control after 500 days. The total microbial and fungal residual C contents under S+M and S+W treatments were substantially higher than those of the control on days 33, 55, and 218 in R30. The contributions of soil microbial residues to SOC at R1, R10, and R30 were 73.77, 71.32, and 69.64%, respectively; fungal residues contributed significantly more than bacterial residues. The total amino sugars and microbial residual C content increased with increasing reclamation period. The addition of maize straw promoted the accumulation of microbial residual C, especially in the early stages of reclamation. Therefore, the addition of maize straw improved the stability of microbial carbon sources in coal mine reclamation soils.

Effects of core soil microbial taxa on soil carbon source utilization under different long-term fertilization treatments in Ultisol

Effects of core soil microbial taxa on soil carbon source utilization under different long-term fertilization treatments in Ultisol

Contributions of plant‐ and microbial‐derived residuals to mangrove soil carbon stocks: Implications for blue carbon sequestration

Abstract Coastal blue carbon ecosystems, particularly mangroves, are becoming increasingly recognised for their importance in mitigating climate change. Still, the specific patterns and drivers of plant lignin components and microbial necromass accumulation in these ecosystems are unclear. In response, we carried out a study along a 40‐year mangrove restoration chronosequence, measuring lignin phenol and amino sugar concentrations in soil profiles (0–100 cm) as indicators of plant‐based and microbial‐derived residues, respectively. Our results showed that restoration significantly increased plant lignin phenol and amino sugar concentrations, with mature mangroves having much higher concentrations than tidal flats. During restoration, the fungal necromass was greater than the bacterial necromass. The factors influencing the lignin phenols were tree biomass, total nitrogen, pH and salinity, while those influencing the formation of amino sugars were total biomass, soil C: N ratio and pH. While the amino sugars decreased, the lignin phenols increased with the content of SOC, providing evidence of the important role lignin phenol components play in the formation of SOC in mangrove. Synthesis: By separating soil carbon into plant‐based and microbial‐derived components, our results demonstrate that the carbon stock in mangrove sediments is vulnerable to disturbances and that changes from anaerobic to aerobic conditions cause significant carbon mineralisation. The precise identification of soil carbon sources in blue carbon ecosystems could aid in elucidating the mechanisms of soil carbon sequestration and their responses to environmental changes. Read the free Plain Language Summary for this article on the Journal blog.

Climate warming and elevated CO2 alter peatland soil carbon sources and stability

Peatlands are an important carbon (C) reservoir storing one-third of global soil organic carbon (SOC), but little is known about the fate of these C stocks under climate change. Here, we examine the impact of warming and elevated atmospheric CO2 concentration (eCO2) on the molecular composition of SOC to infer SOC sources (microbe-, plant- and fire-derived) and stability in a boreal peatland. We show that while warming alone decreased plant- and microbe-derived SOC due to enhanced decomposition, warming combined with eCO2 increased plant-derived SOC compounds. We further observed increasing root-derived inputs (suberin) and declining leaf/needle-derived inputs (cutin) into SOC under warming and eCO2. The decline in SOC compounds with warming and gains from new root-derived C under eCO2, suggest that warming and eCO2 may shift peatland C budget towards pools with faster turnover. Together, our results indicate that climate change may increase inputs and enhance decomposition of SOC potentially destabilising C storage in peatlands.

Warming promotes accumulation of microbial- and plant-derived carbon in terrestrial ecosystems

The impact of global warming on soil carbon pools has been extensively investigated, however, there is still a lack of understanding regarding the specific response of microbial- and plant-derived carbon to warming. To address this knowledge gap, we conducted a comprehensive meta-analysis of 142 studies and evaluated 986 observations comparisons of different carbon source responses to warming. Our results revealed several key insights. Firstly, climate warming resulted in an average increase of 5.46 % in the terrestrial soil carbon pool. Specifically, microbial-derived carbon showed an average increase of 6.32 %, while plant-derived carbon exhibited an average increase of 3.70 %. Secondly, while warming duration and magnitude do not significantly affect the response of microbial-derived carbon to warming, they did impact the response of plant-derived carbon. Lastly, we observed that the response of different carbon sources to warming was affected by the specific environmental backgrounds:ecosystem and climatic zone types affect the response of warming to microbial-derived carbon, while differences in climatic region affect response of warming to plant-derived carbon. The variations in the response of different soil carbon sources to warming can be attributed to the nature of the carbon source themselves, as well as the complex transformations that occur between them through microbial metabolic processes and their interactions with soil mineral particles. We suggest that interactions at the soil-plant-microbe interface should be considered more carefully, and the response of ecosystems to warming should be observed from the perspective of soil organic carbon sources, so as to better understand the response of terrestrial ecosystems carbon cycle to global warming.

“ Assessing the impact of biochar on microbes in acidic soils: Alleviating the toxicity of aluminum and acidity”

In arable soils, anthropogenic activities such as fertilizer applications have intensified soil acidification in recent years. This has resulted in frequent environmental problems such as aluminum (Al) and H+ stress, which negatively impact crop yields and quality in acidic soils. Biochar, as a promising soil conditioner, has attracted much attention globally. The present study was conducted in a greenhouse by setting up 2% biochar rate to investigate how biochar relieves Al3+ hazards in acidic soil by affecting soil quality, soil environment, and soil microbiomes. The addition of biochar significantly improved soil fertility and enzyme activities, which were attributed to its ability to enhance the utilization of soil carbon sources by influencing the activity of soil microorganisms. Moreover, the Al3+ contents were significantly decreased by 66.61–88.83% compared to the C0 level (without biochar treatment). In particular, the results of the 27Al NMR suggested that forms of AlVI (Al(OH)2+, Al(OH)+ 2, and Al3+) were increased by 88.69–100.44% on the surface of biochar, reducing the Al3+ stress on soil health. The combination of biochar and nitrogen (N) fertilizer contributed to the augmentation of bacterial diversity. The application of biochar and N fertilizer increased the relative abundance of the majority of bacterial species. Additionally, the application of biochar and N fertilizer had a significant impact on soil microbial metabolism, specifically in the biosynthesis of secondary metabolites (lipids and organic acids) and carbon metabolic ability. In conclusion, biochar can enhance soil microbial activity and improve the overall health of acidic soil by driving microbial metabolism. This study offers both theoretical and technical guidance for enhancing biochar in acidified soil and promoting sustainable development in farmland production.

Effects of substrate improvement on winter nitrogen removal in riparian reed (Phragmites australis) wetlands: rhizospheric crosstalk between plants and microbes.

With continued anthropogenic inputs of nitrogen (N) into the environment, non-point source N pollutants produced in winter cannot be ignored. As the water-soil interface zones, riparian wetlands play important roles in intercepting and buffering N pollutants. However, winter has the antagonistic effect on the N removal. Substrate improvement has been suggested as a strategy to optimize wetland performance and there remain many uncertainties about the inner mechanism. This study explores the effects of substrate improvement on N removal in winter and rhizospheric crosstalk between reed (Phragmites australis) and microbes in subtropical riparian reed wetlands. The rates of wetland N removal in winter, root metabolite profiles, and rhizosphere soil microbial community compositions were determined following the addition of different substrates (gravel, gravel + biochar, ceramsite + biochar, and modified ceramsite + biochar) to natural riparian soil. The results showed that the addition of different substrates to initial soil enhanced N removal from the microcosms in winter. Gravel addition increased NH4+-N removal by 8.3% (P < 0.05). Gravel + biochar addition increased both TN and NH4+-N removals by 8.9% (P < 0.05). The root metabolite characteristics and microbial community compositions showed some variations under different substrate additions compared to the initial soil. The three treatments involving biochar addition decreased lipid metabolites and enhanced the contents and variety of carbon sources in rhizosphere soil, while modified ceramsite + biochar addition treatment had a greater impact on the microbial community structure. There was evidence for a complex crosstalk between plants and microbes in the rhizosphere, and some rhizosphere metabolites were seen to be significantly correlated with the bacterial composition of the rhizospheric microbial community. These results highlighted the importance of rhizospheric crosstalk in regulating winter N removal in riparian reed wetland, provided a scientific reference for the protection and restoration of riparian reed areas and the prevention and control of non-point source pollution.

Plant biomass mediates the decomposition of polythene film-sourced pollutants in soil through plastisphere bacteria island effect

The polyethylene (PE) film mulching as a water conservation technology has been widely used in dryland agriculture, yet the long-term mulching has led to increasing accumulation of secondary pollutants in soils. The decomposition of PE film-sourced pollutants is directly associated with the enrichment of specific bacterial communities. We therefore hypothesized that plant biomass may act as an organic media to mediate the pollutant decomposition via reshaping bacterial communities. To validate this hypothesis, plant biomass (dried maize straw and living clover) was embedded at the underlying surface of PE film, to track the changes in the composition and function of bacterial communities in maize field across two years. The results indicated that both dry crop straw and alive clover massively promoted the α-diversity and abundance of dominant bacteria at plastisphere, relative to bulk soil. Bacterial communities tended to be clustered at plastisphere, forming the bacteria islands to enrich pollutant-degrading bacteria, such as Sphingobacterium, Arthrobacter and Paracoccus. As such, plastisphere bacteria islands substantially enhanced the degradation potential of chloroalkene and benzoate (p < 0.05). Simultaneously, bacterial network became stabilized and congregated at plastisphere, and markedly improved the abundance of plastisphere module hubs and connectors bacteria via stochastic process. Particularly, bacterial community composition and plastic film-sourced pollutants metabolism were evidently affected by soil pH, carbon and nitrogen sources that were mainly derived from the embedded biomass. To sum up, plant biomass embedding as a nature-based strategy (NbS) can positively mediate the decomposition of plastic-sourced pollutants through plastisphere bacteria island effects.

The Compound Forest–Medicinal Plant System Enhances Soil Carbon Utilization

The sensible use of forest resources and the sound management of forests have become increasingly important throughout the years. In keeping with the trend, a composite forestry operation model has emerged. Traditional Chinese culture and forest management are particularly intertwined in China. Thus, use of the forest–medicine compound management model is recommended. The majority of research on the management of forest–medicine compounds has focused on how to grow more effective medicinal plants, ignoring the effects of the chemicals used on the soil environment, particularly the soil micro-environment. A forest–medicine system was established in South China to investigate the impacts of planting Aspidistra elatior on the variety of rhizospheric microorganisms and their ability to use carbon sources. In the plots with or without A. elatior, three dominant plants (Castanopsis hystrix, Psychotria rubra, and Ficus hirta) grew soil rhizosphere microbes, which were analyzed using Biolog EcoPlates. The study found that planting medicinal plants in the understory improved the soil’s nutritional content, increased the inter-root microbial communities of other medicinal plants, and enhanced the microbes’ ability to use soil carbon sources. The forest–medicine complex model, which rationalizes the use of forest clearings and generates economic and ecological benefits, can significantly increase the quantity of dominant microorganisms and enhance the enrichment of other species, resulting in a positive impact on the soil environment. These findings suggest that the forest–medicine compound management model can improve the use of soil carbon sources throughout the forest system.

Greenhouse gases fluxes and carbon cycle in agroecosystems under humid continental climate conditions

Few complex studies of greenhouse gas (GHG: carbon dioxide, CO2; methane, CH4; nitrous oxide, N2O) fluxes and carbon cycle components were carried out on the geographical territory of Eastern Europe and represented in world databases. Most of the investigations had focused on particular problems of carbon and nitrogen pools and fluxes, or had covered a narrow range of ecosystems. Therefore, the idea of this research was to carry out a multi-disciplinary study of carbon fluxes and pools in the sector of agriculture and land use – one of the main sources of GHG – in regions with humid continental climate that are the most affected by current climate change. Our work was aimed at solving the problem of quantifying GHG fluxes and carbon pools in crop and livestock production, analyzing the reasons for their formation and possible absorption pathways at three locations in the European part of Russia in the cold continental climate zone. The study examined both agricultural and natural ecosystems; field measurements, laboratory analyses, and simulation modelling techniques were applied. The sites included seven types of ecosystems: croplands, pastures, hayfields, fallows, forests, stockyards, and compost piles. Livestock facilities are potent sources of three main biogenic GHG (0.42 − 9.27 g C-CO2 m-2 h-1; 2.43 − 783.51 mg C-CH4 m-2 h-1; 0.01 − 1.49 mg N-N2O m-2 h-1); whereas croplands, hayfields and forests can absorb methane (from −1.10 to −118.2 μg C-CH4 m-2 h-1), as well as pastures, hayfields, fallows and forests are weak sinks of nitrous oxide (from −0.10 to −4.57 μg N-N2O m-2 h-1). Ecosystems were ranked using a non-parametric test by increasing rate of CO2 emission from soil in the following order: croplands (0.06 − 0.24 g C-CO2 m-2 h-1) ≤ hayfields (0.06 − 0.25 g C-CO2 m-2 h-1) ≤ pastures (0.06 − 0.22 g C-CO2 m-2 h-1) = fallows (0.13 − 0.26 g C-CO2 m-2 h-1) = forests (0.16 − 0.30 g CO2 m-2 h-1) ≤ stockyards (0.42 − 1.57 g CO2 m-2 h-1) < compost piles (1.95 − 9.27 g CO2 m-2 h-1). According to the correlation analysis, the most important dynamic environmental factor on which the intensity of soil respiration depends is the soil temperature at the depth of 10 cm (r = 0.55 − 0.97, p < 0.05). As the regression analysis shows, hydrothermal and agrochemical controls explain the 46 − 89% variance of CO2 emission from soil. The content of total carbon (1.31−7.95%) as well as of total nitrogen (0.12 − 0.62%) in soil follows a latitudinal pattern and increases from north to south regardless of the type of land use and farming intensity. The amount of carbon incorporated into the arable soil layer by root residues decreases in the following sequence: barley > winter wheat > spring wheat > oats > soybean from 402 to 198 kg C ha-1 yr-1. Field crop stubble is an additional source of soil carbon at 118 − 368 kg C ha-1 yr-1 in the following sequence: spring wheat > winter wheat > oats > soybean > barley. According to simulation modelling (DeNitrification-DeComposition model, DNDC; and Rothamsted Carbon model, RothC), accumulation of soil organic carbon is possible under winter wheat (270 kg C ha-1 yr-1), while under other crops its stocks decrease (from −190 to −423 kg C ha-1 yr-1). According to DNDC modelling, agrolandscapes are net sinks of carbon to a varying degree (at least 500 kg C ha-1 yr-1), with phytomass being the main pool of carbon sink, most of which is removed with yields.

Understanding the impact of main cell wall polysaccharides on the decomposition of ectomycorrhizal fungal necromass

AbstractThe extramatrical mycelium of ectomycorrhizal fungi (EMF) is an important source of soil carbon and nitrogen. While the importance of recalcitrant compounds in the fungal cell wall has been explored earlier, the contribution of highly abundant but labile components, like glucans, and the role of their temporal dynamics during decomposition remains unknown. For the first time, we examined how the concentration of three main fungal cell wall components (chitin, melanin, glucans) in EMF necromass are related to necromass decomposition, over a period of 6 weeks. Although the initial concentrations of the three components were not good predictors of necromass loss, we found species–specific trends of chitin and glucans loss over time. The chitin concentration during decomposition was tightly linked to the weekly necromass degradation, with trends of chitin loss being dissimilar across fungal species. Chitin concentration was positively correlated with the mass loss in the first week, but in the remaining 5 weeks, it was found to be weakly negatively correlated with mass loss. The similarity in susceptibility to the decomposition of glucans and chitin likely compensates for the impacts of interspecific differences in their initial concentration, leading to overall similar decomposition patterns. Alternatively, other, non‐measured, components (e.g., glycoproteins, N content) may contribute to explaining similar decomposition patterns. Our results indicate that ectomycorrhizal necromass decomposition processes differ from those of plant litter decomposition with, unlike in plants, differences in initial concentrations of major structural carbohydrates (e.g., glucans) being unrelated to differences in decomposition rates. These findings indicate that the decomposition of fungal material cannot be inferred from assumptions based on data provided by studies of plant decomposition.Highlights Necromass of different ectomycorrhizal species decomposes similarly Main cell wall components show different decomposition patterns The relationship between cell wall compounds and mass loss changes over time Mycorrhizal necromass decomposition differs substantially from that of plant litter.

Microplastics derived from polymer-coated fertilizer altered soil properties and bacterial community in a Cd-contaminated soil

With the extensive use of polymer-coated fertilizer, microplastics (MPs) pollution in agricultural soil raises worldwide concerns. While very few studies focalized the effects of polymer-coated fertilizer MPs exposure to acid-contaminated soil. Changes in soil properties, enzymatic activity, and microbial community structure were investigated via the addition of 0.1 % and 1 % (w/w) of polyethylene (PE) and polyurethane (PU) in acid soil. The results showed that two types of MPs addition decreased soil pH and MBC contents, stimulated DTPA (cadmium extracted by diethylenetriamine-pentaacetic acid)-Cd (extracted cadmium) contents, β-glucosidase (BG) and N-acetyl-b-glucosaminidase (NAG) activities significantly. The diversity and richness of fungi was dropped sharply after the addition of 0.1 % PE and PU MPs, but there was the opposite result in fungi. The relative abundance of phylum Mortierellomycota increased significantly in 1 % PE and PU treatments, inferring that the fungus associated with the degradation of recalcitrant carbon source in soil enhanced by the input of MPs. Overall, our research demonstrated that there is still a risk of increased metal bioavailability with the addition of polymer-coated fertilizer MPs, but the fluctuation of soil enzymatic activities and microbial community structure were much more pronounced affected by soil properties via the addition of PE and PU in soil.

Chemical Structure of Stabilizing Layers of Negatively Charged Silver Nanoparticles as an Effector of Shifts in Soil Bacterial Microbiome under Short-Term Exposure.

In this work, we have assessed the exposure of soil bacteria from potato monoculture to three types of silver nanoparticles (AgNPs) as well as silver ions (Ag+ ions) delivered in the form of silver nitrate and a commercially available fungicide. The diversity of the soil microbial community, enzymatic activity, and carbon source utilization were evaluated. It was found that only the fungicide significantly limited the abundance and activity of soil bacteria. Silver ions significantly reduced bacterial metabolic activity. In turn, one type of AgNPs prepared with the use of tannic acid (TA) increased bacterial load and activity. There was found in all AgNPs treated soils (1) a greater proportion of all types of persistent bacteria, i.e., Bacillus, Paenibacillus, and Clostridium; (2) a visible decrease in the proportion of Nocardioides, Arthrobacter, and Candidatus Solibacter; (3) almost complete depletion of Pseudomonas; (4) increase in the number of low-frequency taxa and decrease in dominant taxa compared to the control soil. Despite the general trend of qualitative changes in the bacterial community, it was found that the differences in the chemical structure of the AgNP stabilizing layers had a significant impact on the specific metabolic activity resulting from qualitative changes in the microbiome.

Unraveling the Impact of Long-Term Rice Monoculture Practice on Soil Fertility in a Rice-Planting Meadow Soil: A Perspective from Microbial Biomass and Carbon Metabolic Rate.

Global agricultural intensification leads to a decline in soil quality; however, the extent to which long-term rice cultivation adversely impacts soil, based on chemical and microbial perspectives, remains unclear. The present study was conducted on a seed multiplication farm in Wuchang, Heilongjiang Province, China, to quantify changes in the nutrient properties and microbial profiles of meadow soil in cultivated (rhizosphere and bulk soil) and uncultivated paddy plots from spring to winter. A non-parametric method was used to compare carbon metabolism characteristics among the three groups of soil samples. Principal component analysis was used to distinguish soil chemical properties and carbon source utilization profiles among the soil samples across different seasons. Under rice cultivation, pH, organic matter, total nitrogen, and alkali-hydrolyzed nitrogen concentrations were generally higher in rhizosphere soils than in bulk or uncultivated soils. However, microbial biomass in cultivated soils was consistently lower than in uncultivated soils. There was a discernible difference in carbon substrate preference between summer and other seasons in the three sample groups. In conclusion, agricultural activities in rice cultivation could reshape soil microbial communities in the long term. Notably, specific cultivation activity may induce distinct soil microbial responses, which are more sensitive than chemical responses.

Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil.

Tracking the metabolic activity of whole soil communities can improve our understanding of the transformation and fate of carbon in soils. We used stable isotope metabolomics to trace 13C from nine labeled carbon sources into the water-soluble metabolite pool of an agricultural soil over time. Soil was amended with a mixture of all nine sources, with one source isotopically labeled in each treatment. We compared changes in the 13C enrichment of metabolites with respect to carbon source and time over a 48-day incubation and contrasted differences between soluble sources (glucose, xylose, amino acids, etc.) and insoluble sources (cellulose and palmitic acid). Whole soil metabolite profiles varied singularly by time, while the composition of 13C-labeled metabolites differed primarily by carbon source (R2 = 0.68) rather than time (R2 = 0.07), with source-specific differences persisting throughout incubations. The 13C labeling of metabolites from insoluble carbon sources occurred slower than that from soluble sources but yielded a higher average atom percent (atom%) 13C in metabolite markers of biomass (amino acids and nucleic acids). The 13C enrichment of metabolite markers of biomass stabilized between 5 and 15 atom% 13C by the end of incubations. Temporal patterns in the 13C enrichment of tricarboxylic acid cycle intermediates, nucleobases (uracil and thymine), and by-products of DNA salvage (allantoin) closely tracked microbial activity. Our results demonstrate that metabolite production in soils is driven by the carbon source supplied to the community and that the fate of carbon in metabolites do not generally converge over time as a result of ongoing microbial processing and recycling. IMPORTANCE Carbon metabolism in soil remains poorly described due to the inherent difficulty of obtaining information on the microbial metabolites produced by complex soil communities. Our study demonstrates the use of stable isotope probing (SIP) to study carbon metabolism in soil by tracking 13C from supplied carbon sources into metabolite pools and biomass. We show that differences in the metabolism of sources influence the fate of carbon in soils. Heterogeneity in 13C-labeled metabolite profiles corresponded with compositional differences in the metabolically active populations, providing a basis for how microbial community composition correlates with the quality of soil carbon. Our study demonstrates the application of SIP-metabolomics in studying soils and identifies several metabolite markers of growth, activity, and other aspects of microbial function.

Global patterns and driving factors of plant litter iron, manganese, zinc, and copper concentrations

Plant litter decomposition is not only the major source of soil carbon and macronutrients, but also an important process for the biogeochemical cycling of trace elements such as iron (Fe), manganese (Mn), zinc (Zn), and copper (Cu). The concentrations of plant litter trace elements can influence litter decomposition and element cycling across the plant and soil systems. Yet, a global perspective of the patterns and driving factors of trace elements in plant litter is missing. To bridge this knowledge gap, we quantitatively assessed the concentrations of four common trace elements, namely Fe, Mn, Zn, and Cu, of freshly fallen plant litter with 1411 observations extracted from 175 publications across the globe. Results showed that (1) the median of the average concentrations of litter Fe, Mn, Zn, and Cu were 0.200, 0.555, 0.032, and 0.006 g/kg, respectively, across litter types; (2) litter concentrations of Fe, Zn, and Cu were generally stable regardless of variations in multiple biotic and abiotic factors (e.g., plant taxonomy, climate, and soil properties); and (3) litter Mn concentration was more sensitive to environmental conditions and influenced by multiple factors, but mycorrhizal association and soil pH and nitrogen concentration were the most important ones. Overall, our study provides a clear global picture of plant litter Fe, Mn, Zn, and Cu concentrations and their driving factors, which is important for improving our understanding on their biogeochemical cycling along with litter decomposition processes.

Responses of soil microbial biomass and carbon source utilization to simulated nitrogen deposition and drought in a Cunninghamia lanceolata plantation

Chinese fir (Cunninghamia lanceolata) plantation is a dominant forest type and carbon sink in the subtropical region in China. An experiment with simulated nitrogen deposition (addition of 40 kg N·hm-2·a-1) and drought (50% of precipitation exclusion, PE) was established in Chinese fir plantation in 2018. Soil samples (0-15 cm) were collected in summer (July 2020) and winter (January 2021). Soil microbial biomass, colony forming units (CFUs) and carbon source utilization were determined through phospholipid fatty acids (PLFAs), plate count, and Biolog methods, respectively. The results showed significant seasonal variations of PLFAs-related microbial biomass and composition. Soil bacterial and fungal CFUs tended to be decreased by nitrogen addition or precipitation exclusion treatment, and bacterial CFUs were more sensitive to the two treatments than fungal CFUs. Soil microbial function (i.e. carbon source utilization) was not affected by nitrogen addition, but significantly decreased by precipitation exclusion. There was a significant positive correlation between bacterial CFUs and microbial function, indicating the crucial roles of culturable bacteria in microbial carbon transformation. Our results highlight the critical effects of nitrogen deposition and 50% reduced precipitation on microbes in topsoil of fir plantation, with implications for unraveling soil microbial ecological function of subtropical forest ecosystem under global changes in future.