The mass extinction event of the Late Triassic is relatively poorly-known among the five major extinction events in the Phanerozoic. Moreover, the typical marine Triassic-Jurassic (T-J) records are absent in regions other than the western Tethys and Boreal realms, and thus major questions remain as to the global significance and cause(s) of the event. Especially in the eastern Tethys, no marine sedimentary records of the T-J transition are known from open marine facies, and thus the extent and significance of the marine T-J transition are unclear. We show the first high-resolution carbonate carbon-isotope record, geochemistry, palaeontologic and lithological data from a marine T-J section (Wenquan section). In the columnar profile, we place the T-J boundary at the top of grainstone layers representing the shallowest water deposit. Our results reveal that the carbonate carbon-isotope record contains two different excursions in the Wenquan section of northern Tibet, China. These are consistent with the “initial” and “main” negative carbon-isotope excursions (CIEs) found in the global stratotype section and point (GSSP), strongly suggesting their global nature. A biological crisis together with paleoceanographic changes was identified near the main CIE. This means that a mass of isotopically light carbon was rapidly released into the air and oceans, resulting in environmental changes and biological crisis. • The first high-resolution record of the T-J boundary from the Tibet, East Tethys. • The distinct twice negative CIEs are consistent with the CIEs found in the global GSSP profile. • A biological crisis together with paleoceanographic changes was discovered.