Soil organic carbon (SOC) is the major constituent of the soil organic matter. SOC stocks are determined by several factors such as altitude, slope, aspect, canopy cover, and vegetation type. Using the Third National Forest Inventory (2010–2014) data of Nepal, we assessed SOC status in forests at a national scale for the better understanding of the SOC distribution within Nepal. In this study, we estimated SOC against different factors and tested the spatial distribution of SOC using analysis of variance (ANOVA). The results showed that the forests located at a higher altitude have higher SOC accumulation. In particular, broadleaved forests exhibit a higher amount of carbon stock compared to other forest types. Moreover, forests with a larger canopy cover, located on a higher slope, and with a cooler aspect are associated with a higher accumulation of SOC. The SOC stock in the forest varies according to altitude, slope, aspect, canopy cover, and forest type, which might be attributed to the change in the microclimate of the area. The significant increase in SOC amount with the increase in slope, altitude, and crown cover helps to understand the extent of SOC distribution in forests. Broadleaved forests with a larger canopy cover in the higher altitude region have a higher SOC retention potential, which is likely to contribute to mitigating the impacts of climate change by sinking more carbon into the soil.