760 samples of biological material from various regions of the Russian Federation were studied, 320 isolates of yeast fungi were isolated, which amounted to 42.10% of the total number of samples. Of the 760 samples, 29.0% belonged to cattle, 11.8% to small cattle, 13.0% to horses, 1.6% to camels, 7.2% to cats and 17.5% to dogs, 1.8% to raw milk and 0.8% to environmental objects (OVS). Most of the isolated isolates (240) of yeast fungi belonged to fungi of the genus Candida, which amounted to 75%. The species diversity of fungi of the genus Candida is represented by 15 species. The largest number of isolates belong to the species Candida albicans, Candida catenulata, Candida kefyr Candida krusei, Candida membranifaciens, Candida pararugosa and Candida tropicals. These species of fungi of the genus Candida are known as pathogens of fungal infections in humans and animals. The species diversity of species not belonging to the genus Candida is limited to 7 species in 5 genera – Geotrichum, Malassezia, Rhodotorula, Saccharomyces and Trichosporon. The fact of the development of resistance of some yeast species to the most commonly used antifungal drugs (fluconazole and voriconazole) has been established. It was revealed that 30% of the studied isolates of the genus Candida are resistant to fluconazole, 32% are dose–dependent, 38% are sensitive, 28% are resistant to voriconazole, 30% are dose–dependent, 42% are sensitive. Isolates not belonging to the genus Candida showed resistance to fluconazole 19%, 38% - dose–dependent, 43% - sensitive, voriconazole – 23% – resistant, 18% – dose–dependent and 59% - sensitive. The proportion of isolates of yeast fungi resistant to fluconazole and voriconazole isolated from animals is quite large, in some cases it is up to 50% (C. tropicalis). A high level of resistance was found in isolates of Candida albicans, Candida catenulata, Candida rugosa and Candida pararugosa, which can significantly complicate the treatment of infections caused by them and contribute to the worldwide problem of antibiotic resistance.