Summary of complement deficiencies Component Number of cases Chromosome location of gene Disease associations Classical pathway proteins Clq Clr/Cls C4 C2 I>40 10 17 t>100 A, B chains 1,p; C chain ? Closely linked on 12,p13 Two genes C4A and C4B in MHC on chromosome 6 MHC locus on chromosome 6, adjacent to factor B Alternative pathway components Factor D 1 ? ?X Properdin I>50 X C3, factors H and I C3 16 19 Factor I 15 4 Factor H 12 1 in RCA cluster Terminal components C5 19 9 C6 >150 5 closely linked to C7 C7 26 5 C8 32 c~, 13 closely linked on 1, y on 9 C9 5 (Caucasoid) 5 Japanese (many) SLE in majority; pyogenic infections including meningitis As above As above Pyogenic infections; SLE; many healthy Neisserial infections Neisserial infections; rarely other pyogenic infection Pyogenic infections; glomerulonephritis; SLE As above As above; haemolytic uraemic syndrome Neisserial infections; rarely SLE As above As above As above Neisserial infection; weak association with neisserial infection Data derived in part from Ref. 24 and updated to the end of 1990 by newly described cases. and preliminary data suggest that deficiency is often the result of a defect in synthesis of the B chain 7. The genes encoding the A and B chains are closely linked on chromosome lp, whereas that encoding the C chain has yet to be assigned. Deficiencies of Clr or Cls are rare (total of ten cases) and result from a failure to synthesize these subcompo- nents. Most of the individuals so far described have had a combined deficiency of the two subcomponents, a prob- able consequence of their close genetic linkage (Table 1). Typically, these individuals have no Clr and reduced levels of Cls (20-40O/o) 7. C4 is encoded by two closely linked, highly poly- morphic genes, located within the MHC on chromosome 6, which give rise to the isotypic forms, C4A and C4B. Complete C4 deficiency thus requires the inheritance of null alelles at both C4 loci and only about 16 individuals with homozygous deficiency have been identified, most of whom have presented with early onset, severe, SLE 8. Single null alleles are common at both loci, resulting in the frequent detection of individuals with heterozygous deficiencies of one or both isotypes or, more rarely, homozygous deficiency of one isotype 8. It has been esti- mated that only about 60% of the population have four functioning C4 genes, making partial deficiency of C4 the commonest immune deficiency in man. Most null alleles do not contribute to C4 protein production and the serum concentration is thus related, approximately, to the number of functional genes. However, as there is considerable overlap of C4 concentrations between the different genotypes, it is impossible to ascertain C4 null alleles simply by measuring C4 concentration. The strong link between homozygous complement deficiency and SLE led to the formulation of the hypoth- esis that partial inherited complement deficiency might also cause increased disease susceptibility. Initial studies showed that there is indeed an increased prevalence of null alleles, mainly of C4A, among Caucasoid patients with SLE but the analysis was confounded by strong linkage disequilibrium between C4A null alleles and HLA-DR3 (Ref. 9), which effectively prevented separ- ation of the relative contribution of these two putative disease susceptibility genes. One approach to at- tempt to disentangle the relative contributions of HLA- DR3 and C4A Q*0 to disease susceptibility is examin- ation of the MHC associations with SLE in different racial groups, in which haplotypes containing different combinations of the allotypic variants of the different MHC gene products are found. With this type of ap- proach, it has been found that the association of SLE with
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