Photorespiration Research Articles

Utilizing a high-throughput visualization screening technology to develop a genetically encoded biosensor for monitoring 5-aminolevulinic acid production in engineered Escherichia coli

5-Aminolevulinic acid (5-ALA) is a non-protein amino acid widely used in agriculture, animal husbandry and medicine. Currently, microbial cell factories are a promising production pathway, but the lack of high-throughput fermentation strain screening tools often hinders the exploration of engineering strategies to increase cell factory yields. Here, mutant AC103-3H was screened from libraries of saturating mutants after response-specific engineering of the transcription factor AsnC of L-asparagine (Asn). Based on mutant AC103-3H, a whole-cell biosensor EAC103-3H with a specific response to 5-ALA was constructed, which has a linear dynamic detection range of 1–12 mM and a detection limit of 0.094 mM, and can be used for in situ screening of potential high-producing 5-ALA strains. With its support, overexpression of the C5 pathway genes using promoter engineering assistance resulted in a 4.78-fold enhancement of 5-ALA production in the engineered E. coli. This study provides an efficient strain screening tool for exploring approaches to improve the 5-ALA productivity of engineered strains.

PredPSP: a novel computational tool to discover pathway-specific photosynthetic proteins in plants.

Photosynthetic proteins play a crucial role in agricultural productivity by harnessing light energy for plant growth. Understanding these proteins, especially within C3 and C4 pathways, holds promise for improving crops in challenging environments. Despite existing models, a comprehensive computational framework specifically targeting plant photosynthetic proteins is lacking. The underutilization of plant datasets in computational algorithms accentuates the gap this study aims to fill by introducing a novel sequence-based computational method for identifying these proteins. The scope of this study encompassed diverse plant species, ensuring comprehensive representation across C3 and C4 pathways. Utilizing six deep learning models and seven shallow learning algorithms, paired with six sequence-derived feature sets followed by feature selection strategy, this study developed a comprehensive model for prediction of plant-specific photosynthetic proteins. Following 5-fold cross-validation analysis, LightGBM with 65 and 90 LGBM-VIM selected features respectively emerged as the best models for C3 (auROC: 91.78%, auPRC: 92.55%) and C4 (auROC: 99.05%, auPRC: 99.18%) plants. Validation using an independent dataset confirmed the robustness of the proposed model for both C3 (auROC: 87.23%, auPRC: 88.40%) and C4 (auROC: 92.83%, auPRC: 92.29%) categories. Comparison with existing methods demonstrated the superiority of the proposed model in predicting plant-specific photosynthetic proteins. This study further established a free online prediction server PredPSP ( https://iasri-sg.icar.gov.in/predpsp/ ) to facilitate ongoing efforts for identifying photosynthetic proteins in C3 and C4 plants. Being first of its kind, this study offers valuable insights into predicting plant-specific photosynthetic proteins which holds significant implications for plant biology.

Investigating the cis-regulatory basis of C3 and C4 photosynthesis in grasses at single-cell resolution

While considerable knowledge exists about the enzymes pivotal for C4 photosynthesis, much less is known about the cis-regulation important for specifying their expression in distinct cell types. Here, we use single-cell-indexed ATAC-seq to identify cell-type-specific accessible chromatin regions (ACRs) associated with C4 enzymes for five different grass species. This study spans four C4 species, covering three distinct photosynthetic subtypes: Zea mays and Sorghum bicolor (NADP-dependent malic enzyme), Panicum miliaceum (NAD-dependent malic enzyme), Urochloa fusca (phosphoenolpyruvate carboxykinase), along with the C3 outgroup Oryza sativa. We studied the cis-regulatory landscape of enzymes essential across all C4 species and those unique to C4 subtypes, measuring cell-type-specific biases for C4 enzymes using chromatin accessibility data. Integrating these data with phylogenetics revealed diverse co-option of gene family members between species, showcasing the various paths of C4 evolution. Besides promoter proximal ACRs, we found that, on average, C4 genes have two to three distal cell-type-specific ACRs, highlighting the complexity and divergent nature of C4 evolution. Examining the evolutionary history of these cell-type-specific ACRs revealed a spectrum of conserved and novel ACRs, even among closely related species, indicating ongoing evolution of cis-regulation at these C4 loci. This study illuminates the dynamic and complex nature of cis-regulatory elements evolution in C4 photosynthesis, particularly highlighting the intricate cis-regulatory evolution of key loci. Our findings offer a valuable resource for future investigations, potentially aiding in the optimization of C3 crop performance under changing climatic conditions.

Response of Bacterial Community Structure and Function in Rhizosphere Soil on the Photosynthesis of Selected Plant Types C3 and C4 under Bis(2,4,6-tribromophenoxy) Ethane Exposure

This study investigated the response of a bacterial community’s structure and function in the rhizosphere soil of C3 and C4 plants under bis(2,4,6-tribromophenoxy) ethane (BTBPE) exposure. The bacterial community composition was determined using 16S rRNA sequencing, while FAPROTAX and PICRUSt 2 were employed for functional predictions. Results showed significant differences between C3 and C4 plants in terms of bacterial community structure. C3 plants exhibited higher abundances of Proteobacteria, Bacteroidetes at the phylum level and Sphingomicrobium at the genus level, compared to C4 plants. Conversely, C4 plants had higher abundances of Actinobacteria and Patescibacteria at the phylum level and Nocardioides at the genus level. LEfSe and function prediction analyses revealed that the rhizosphere soil bacteria in C3 plants exhibited significantly higher enrichment in nitrogen fixation functions (p < 0.05), whereas C4 plants showed a significantly higher relative abundance of bacteria and functions related to organic pollutant degradation (p < 0.05). These findings suggest that the rhizosphere soil bacteria of C3 plants exhibit a stronger response to BTBPE exposure in nitrogen metabolism-related processes, while C4 plants possess superior biodegradation ability compared to C3 plants.

Mesophyll airspace unsaturation drives C4 plant success under vapor pressure deficit stress

A fundamental assumption in plant science posits that leaf air spaces remain vapor saturated, leading to the predominant view that stomata alone control leaf water loss. This concept has been pivotal in photosynthesis and water-use efficiency research. However, recent evidence has refuted this longstanding assumption by providing evidence of unsaturation in the leaf air space of C3 plants under relatively mild vapor pressure deficit (VPD) stress. This phenomenon represents a nonstomatal mechanism restricting water loss from the mesophyll. The potential ubiquity and physiological implications of this phenomenon, its driving mechanisms in different plant species and habitats, and its interaction with other ecological adaptations have. In this context, C4 plants spark particular interest for their importance as crops, bundle sheath cells' unique anatomical characteristics and specialized functions, and notably higher water-use efficiency relative to C3 plants. Here, we confirm reduced relative humidities in the substomatal cavity of the C4 plants maize, sorghum, and proso millet down to 80% under mild VPD stress. We demonstrate the critical role of nonstomatal control in these plants, indicating that the role of the CO2 concentration mechanism in CO2 management at a high VPD may have been overestimated. Our findings offer a mechanistic reconciliation between discrepancies in CO2 and VPD responses reported in C4 species. They also reveal that nonstomatal control is integral to maintaining an advantageous microclimate of relatively higher CO2 concentrations in the mesophyll air space of C4 plants for carbon fixation, proving vital when these plants face VPD stress.

Characterization, Phylogenetic Analyses, and Pathogenicity of Eutiarosporella dactylidis on Sorghum in China.

Sorghum, the fifth-largest cereal crop globally and a C4 crop, mainly grows in arid and semi-arid areas. In 2021-2023, a new foliar disease of sorghum occurred in China. The diseased leaves showed water-soaked symptoms in the leaf tip and margins, resulting in half- and full-leaf desiccation and necrosis, thus affecting plant photosynthesis. A total of 24 Eutiarosporella strains were isolated from symptomatic leaves. Based on morphological characteristics and multi-locus phylogenetic analysis involving ITS, LSU, and EF1-α sequences, and the pathogenicity test, the pathogen of sorghum causing leaf blight in China was identified as Eutiarosporella dactylidis. The virulence of all E. dactylidis strains was evaluated using the spray-mycelium method. Different strains showed significantly different pathogenicities toward a susceptible cultivar, Longza 10, with disease indexes ranging from 23.76 to 60.37. This study first reported leaf blight of sorghum caused by E. dactylidis and named it "Eutiarosporella leaf blight", which provides a theoretical basis for farmers in disease management.

Regulatory Network of the Late-Recruited Primary Decarboxylase C4NADP-ME in Sugarcane.

In agronomically important C4 grasses, efficient CO2 delivery to Rubisco is facilitated by NADP-malic enzyme (C4NADP-ME), which decarboxylates malate in bundle sheath cells. However, understanding the molecular regulation of the C4NADP-ME gene in sugarcane (Saccharum spp.) is hindered by its complex genetic background. Enzymatic activity assays demonstrated that decarboxylation in sugarcane Saccharum spontaneum predominantly relies on the NADP-ME pathway, similar to sorghum (Sorghum bicolor) and maize (Zea mays). Comparative genomics analysis revealed the recruitment of eight core C4 shuttle genes, including C4NADP-ME (SsC4NADP-ME2), in the C4 pathway of sugarcane. Contrasting to sorghum and maize, the expression of SsC4NADP-ME2 in sugarcane is regulated by different transcription factors (TFs). We propose a gene regulatory network for SsC4NADP-ME2, involving candidate TFs identified through gene co-expression analysis and yeast one-hybrid experiment. Among these, ABA INSENSITIVE5 (ABI5) was validated as the predominant regulator of SsC4NADP-ME2 expression, binding to a G-box within its promoter region. Interestingly, the core element ACGT within the regulatory G-box was conserved in sugarcane, sorghum, maize, and rice (Oryza sativa), suggesting an ancient regulatory code utilized in C4 photosynthesis. This study offers insights into SsC4NADP-ME2 regulation, crucial for optimizing sugarcane as a bioenergy crop.

Sources and transport of organic matter in the Ganges-Brahmaputra-Meghna River system of Bengal Basin, Bangladesh

This study aimed to understand the sources and transport mechanism of organic matter (OM) in the Ganges-Brahmaputra-Meghna (GBM) river system in Bangladesh. We conducted analyses of total organic carbon (TOC), total nitrogen (TN), their stable isotopes (δ13C and δ15N), and sediment grain size. The results reveal a heterogeneous mixture of OM derived from terrestrial plants, aquatic environments, and anthropogenic sources. The Brahmaputra River exhibited higher concentrations of TOC and TN, with δ13C and δ15N values indicating that the OM is primarily sourced from C3 plants. Conversely, the Ganges River demonstrated lower TOC levels and higher isotopic values, reflecting significant anthropogenic inputs. The Lower Meghna showed a mixture of terrestrial and marine sources. Variations in the TOC/TN ratios across the river system underscore the complex interplay between natural and anthropogenic factors. Additionally, sediment grain size plays a crucial role, with finer sediments in the Brahmaputra River associated with increased OM concentrations, while coarser sediments in the Ganges River correlate with lower TOC and TN levels.

Does the response of Rubisco and photosynthesis to elevated [CO2] change with unfavourable environmental conditions?

Climate change due to anthropogenic CO2 emissions affects plant performance globally. To improve crop resilience, we need to understand the effects of elevated CO2 concentration (e[CO2]) on CO2 assimilation and Rubisco biochemistry. However, the interactive effects of e[CO2] and abiotic stress are especially unclear. This study analyses the CO2 effect on photosynthetic capacity under different water availability and temperature conditions in 42 different crop species, varying in functional group, photosynthetic pathway and phenological stage. We analysed close to 3000 data points extracted from 120 published manuscripts. For C3 species, e[CO2] increases net photosynthesis and intercellular [CO2], while reducing stomatal conductance and transpiration. Vmaxc, Rubisco in vitro extractable maximal activity and content also decrease with e[CO2] in C3 species, while C4 crops are less responsive to e[CO2]. The interaction with drought and/or heat stress does not significantly alter these photosynthetic responses, indicating that the photosynthetic capacity of stressed plants responds to e[CO2]. Moreover, e[CO2] has strong effect on the photosynthetic capacity of grasses mainly in the final stages of development. This study provides insight into the intricate interactions within the plant photosynthetic apparatus under the influence of climate change, enhancing the understanding of mechanisms governing plant responses to environmental parameters.

One place, many worlds – nutrition strategies of human groups inhabiting the site 3 in Miechów (southern Poland) since the Neolithic until the Iron Age

Abstract Studies on the ratios of stable isotopes of carbon and nitrogen constitute a research tool commonly applied in bioarchaeology to reconstruct human diets, including the origins of proteins consumed, the relationship between plant and animal foods, weaning processes, and parameters of the environment from which the food was obtained. Within the comprehensive analysis of the excavation results carried out at site 3 in Miechów (approximately 30 km north of Kraków), isotope analyses of δ13C and δ15N were performed on the human groups that inhabited the site from the Neolithic to the Iron Age. In total, 41 skeletons were investigated. The analyses aimed to hypothesise the nutritional strategies of communities of successive periods and to compare the knowledge obtained with current data and interpretations on food management in prehistoric communities of Central Europe. The results indicate a general predominance of a terrestrial diet, with plant-based foods prevailing, although not conspicuously. However, there are indications of slightly varying nutritional strategies among successive human groups. These differences are related to the contribution of animal protein and the relationship between C3 and C4 plants. For instance, in the Middle Neolithic (4th millennium BC), a greater consumption of meat and/or cereals from manured fields can be postulated compared to the Early Neolithic (late 6th and 5th millennia BC). On the other hand, the proportion of meat in the diet of Early Bronze Age inhabitants (2nd millennium BC) was possibly the lowest in the entire history of site occupation. This proportion returned to near-Neolithic levels in the developed Bronze Age and Iron Age (1st millennium BC). Regarding plant food, the results indicate greater variability in the plants consumed in the Bronze and Iron Ages. Levels of δ13C imply some contribution from C4 plants, that is, millet, during these periods. This aligns with recently formulated theories suggesting the post-Neolithic beginnings of millet cultivation and consumption in Central Europe.

Identifying the botanical origin of alcohol using 2H SNIF NMR: A case study of “polish vodka” PGI

In this study, we utilized 2H SNIF NMR and chemometric techniques to differentiate the botanical origin of raw materials used in vodka production in Poland, specifically focusing on plants with C3 metabolism such as grain, potato, and sugar beet. Additionally, for the first time, mixtures of alcohols from different C3 plants were analysed to detect adulteration. Our goal was to determine if it is possible to detect the addition of a different raw material in vodka made from a mixture of alcohols derived from C3 plants. Significant isotopic differences were confirmed using analysis of variance and Tukey's tests. Linear relationships in grain-potato, grain-sugar beet, and beet-potato mixtures enabled composition determination. The detectability threshold for adulterants ranged from 10 % to 50 %, depending on the type of raw material. Our findings suggest that 2H SNIF-NMR is an effective tool for authenticating vodka and detecting adulteration in products marketed as “Polish vodka.”

Identification and expression profiling of heteroglycan glucosidase 1 enzyme of Cenchrus americanus

Maltose metabolism is a critical process during plant growth, which provides energy during development and reproduction. To investigate maltose metabolism in C4 plants, we identified and analyzed the expression of the heteroglycan glucosidase 1 (HGL1) enzyme from Cenchrus americanus (L.) Morrone. The sequenced cDNA of CaHGL1 (3469 bp) encoded for a deduced protein of 1047 aa. Transmembrane topology revealed that CaHGL1 is a membrane-bound protein that comprises a signal peptide and a transmembrane helix. The promoter of CaHGL1 contains cis-elements related to the responses to light, abiotic stress and phytohormones. Real-time PCR revealed high expression in inflorescence and roots during the vegetative stage. Moreover, phytohormone treatments caused an activation of CaHGL1 expression in the seedling root and shoot by ABA, cytokinin, and BL, and an inhibition by JA in the seedling root and shoot. However, treatment with GA and IAA caused an activation in the CaHGL1 expression only in the shoot. Stress treatment induced the expression of CaHGL1 under drought, cold, and salt stress. The results of the current study give insight into the activity of the HGL1 enzyme in maltose metabolism under abiotic stress, which can aid in understanding the different metabolic pathways in Cenchrus americanus under stress.

Response of maize (Zea mays L.) on yield, physiology and stomatal behaviour under two different elevated CO<sub>2</sub> concentrations. Do these anatomical changes affect the physiology of the C4 crop plant under high CO<sub>2</sub> conditions?

Response of maize (Zea mays L.) on yield, physiology and stomatal behaviour under two different elevated CO<sub>2</sub> concentrations. Do these anatomical changes affect the physiology of the C4 crop plant under high CO<sub>2</sub> conditions?

Taxonomic and stable isotope analyses of mammal remains from the Lateglacial site of Grotta Polesini (central Italy): Paleoenviromental implications

ABSTRACTGrotta Polesini is one of the most famous paleontological and archaeological sites of central Italy, which testifies to its human occupation during the Lateglacial. The site comprises a cave system where systematic excavation campaigns have been carried out since the 1950s. In 1974, 656 mammal remains were collected but never studied. This fossil collection is here described for the first time through taxonomic and stable isotope analyses of the enamel of selected mammal teeth. The aim is to reconstruct the paleoenvironmental and climatic conditions of the site and to offer new information on terrestrial ecosystems during the Lateglacial in central Italy. The faunal assemblage studied herein, in addition to other species reported in previous works, suggests cold climate conditions. We also describe a right radius of an adult individual of Homo sapiens, increasing the human fossil record of the site. Carbon isotope data point to a scenario dominated by C3 plants in open and dry habitats, such as grasslands and steppes, in accordance with the pollen data from central Italy. The oxygen isotope data suggest the use of water resources with a local origin, i.e. local precipitation and surface waters with a provenance from the nearby Apennine chain. The ecology of the taxa influenced the oxygen isotope values, especially in the case of semi‐obligate to non‐obligate drinker species.

Native arbuscular mycorrhizal fungi drive ecophysiology through phenotypic integration and functional plasticity under the Sonoran desert conditions.

Knowledge is scarce to what extent environmental drivers and native symbiotic fungi in soil induce abrupt (short-term), systemic (multiple traits), or specific (a subset of traits) shifts in C3 plants' ecophysiological/mycorrhizal responses. We cultivated an emblematic native C3 species (Capsicum annuum var. glabriusculum, "Chiltepín") to look at how the extreme heat of the Sonoran desert, sunlight regimes (low = 2, intermediate = 15, high = 46 mol m2 d-1) and density of native arbuscular mycorrhizal fungi in soil (low AMF = 1% v/v, high AMF = 100% v/v), drive shifts on mycorrhizal responses through multiple functional traits (106 traits). The warming thresholds were relentlessly harsh even under intensive shade (e.g. superheat maximum thresholds reached ranged between 47-63°C), and several pivotal traits were synergistically driven by AMF (e.g. photosynthetic capacity, biomass gain/allometry, and mycorrhizal colonization traits); whereas concurrently, sunlight regimes promoted most (76%) alterations in functional acclimation traits in the short-term and opposite directions (e.g. survival, phenology, photosynthetic, carbon/nitrogen economy). Multidimensional reduction analysis suggests that the AMF promotes a synergistic impact on plants' phenotypic integration and functional plasticity in response to sunlight regimes; however, complex relationships among traits suggest that phenotypic variation determines the robustness degree of ecophysiological/mycorrhizal phenotypes between/within environments. Photosynthetic canopy surface expansion, Rubisco activity, photosynthetic nitrogen allocation, carbon gain, and differential colonization traits could be central to plants' overall ecophysiological/mycorrhizal fitness strengthening. In conclusion, we found evidence that a strong combined effect among environmental factors in which AMF are key effectors could drive important trade-offs on plants' ecophysiological/mycorrhizal fitness in the short term.

Instantaneous growth: a compact measure of efficient carbon and nitrogen allocation in leaves and roots of C3 and C4 plants.

Elucidating plant functions and identifying crop productivity bottlenecks requires the accurate quantification of their performance. This task has been attained through photosynthetic models. However, their traditional focus on the leaf's capacity to uptake CO2 is becoming increasingly restrictive. Advanced bioengineering of C3 plants has made it possible to increase rates of CO2 assimilation by packing photosynthetic structures more densely within leaves. The operation of mechanisms that concentrate CO2 inside leaves can boost rates of assimilation while requiring a lower investment in carboxylating enzymes. Therefore, whether in the context of spontaneous plants or modern manipulation, considering trade-offs in resource utilization efficiency emerges as a critical necessity. I've developed a concise and versatile analytical model that simulates concurrent leaf and root growth by balancing instantaneous fluxes of carbon and nitrogen. Carbon is made available by leaf photosynthesis, encompassing all types of biochemistries, while nitrogen is either taken up by roots or remobilized after senescence. The allocation of leaf nitrogen between light or carbon reactions was determined using a fitting algorithm: growth maximisation was the only reliable fitting goal. Both the leaf nitrogen pool and the root-to-leaf ratio responded realistically to various environmental drivers (CO2 concentration, light intensity, soil nitrogen), replicating trends typically observed in plants. Furthermore, modifying the strength of CO2 concentrating mechanisms proved sufficient to alter the root-to-leaf ratio between C3 and C4 types. This direct and mechanistic one-to-one link convincingly demonstrates, for the first time, the functional dependence of a morphological trait on a single biochemical property.

Stomatal response to VPD in C4 plants with different biochemical sub-pathways.

C4 NAD-malic enzyme (NAD-ME) species occurs in drier regions and exhibit different drought responses compared to C4 NADP-malic enzyme (NADP-ME) species. However, a physiological mechanism explaining the geographical discrepancies remains uncertain. This study examined gas exchange patterns that might explain different distributions observed between two subtypes of C4 photosynthesis. We measured the response of leaf gas exchange to vapour pressure deficit (VPD) and CO2 in plants from six distinct C4 clades having closely related NAD-ME and NADP-ME species using a Li-Cor 6400 gas exchange system. We found that NAD-ME species exhibited greater relative reductions in stomatal conductance with increases in VPD than NADP-ME species but observed no consistent subtype differences in C4 cycle activity as indicated by the initial slope of the A response to intercellular CO2 concentration. Based on these results, we hypothesise the greater response of gs to increasing VPD may enable NAD-ME plants to outperform NADP-ME plants in hot, dry environments where VPD is normally high.

Dynamic responses of chlorophyll fluorescence parameters to drought across diverse plant families.

Chlorophyll fluorescence measurement is a quick and efficient tool for plant stress-level detection. The use of Pulse amplitude modulation (PAM), allows the detection of the plant stress level under field conditions. Over the years, several parameters estimating different parts of the chlorophyll and photosystem response were developed to describe the plant stress level. Despite all fluorescence parameters being based on the same measurements, their relationship remains unclear, and their response to drought stress is significantly influenced by the incoming light intensity. In this study, we use six different annual plants from different families, both C3 and C4 photosynthesis types, to describe the plant response to drought through the fluorescence parameters response (NPQ, Y(NPQ), and qN). To describe the dynamic response to drought, we employed light-response curves, adapting and fitting an equation for each curve to compare the drought response for each fluorescence parameter. The results demonstrated that the non-photochemical quenching (NPQ) and the quantum yield of non-photochemical quenching [Y(NPQ)] maximal values decrease when the PSII functionality (Fv/Fm) is lower than ~0.7. The basal fluorescence level ( and remained unaffected by the stress level and stayed stable across the various plants and stress levels. Our results indicate that the response of different stress parameters follows a distinct order under continuous drought. Consequently, monitoring just one parameter during long-term stress assessments may result in biased analysis outcomes. Incorporating multiple chlorophyll fluorescence parameters offers a more accurate reflection of the plant's stress level.

Expansion of C4 plants in the tropical Leizhou Peninsula during the Last Glacial Maximum: Modulating effect of regional sea-level change

Due to the lack of relatively long-term, high-resolution terrestrial records in tropical southern China, there is limited published research on terrestrial vegetation changes and their responses to regional and/or global climate forcings since the last glacial period. In this study, a 170-cm-long peat core (covering the interval from ~44.1 to 9.3 cal kyr BP) recovered from the Xialu peatland in Leizhou Peninsula, South China, was analyzed for organic carbon isotope (δ13Corg), along with total organic carbon, total nitrogen, and bulk dry density, to investigate past vegetation and hydroclimatic changes. Our results showed that C4 plants dominated the study region during Marine Isotope Stage (MIS) 2 (29–14 cal kyr BP), indicating generally cooler and drier conditions during MIS 2 relative to late MIS 3 (~ 44.1–29 cal kyr BP) and early MIS 1 (14–9.3 cal kyr BP). In particular, the driest conditions occurred during the Last Glacial Maximum (~ 25–19 cal kyr BP) when sea level was at its lowest. In addition, several millennial-scale climatic events associated with the expansion of C4 plants were clearly identified. Our record is sensitive to a variety of glacial-interglacial forcings, including regional processes and global forcing, among which the inundation history of Beibu Gulf due to sea-level change during the late Quaternary, which has been neglected in previous studies, may have played an important role in modulating paleo-hydroclimatic changes in tropical southern China.

Reconstructing diet after the fall of the Wari Empire in the central Andean Highlands: A study of human dental calculus

Stable isotopes from bones and teeth have been used to reconstruct human lifeways in bioarchaeological research for over 30 years. Recently, there have been efforts to use less invasive methods of analysis that meet ethical standards and do not compromise the integrity of human skeletal remains. To that end, this study examines dental calculus from human teeth as a proxy for paleodietary reconstruction. This current work builds on a handful of studies that have tested the use of dental calculus for reconstructing diet, which have shown mixed results. This study contributes to those ongoing efforts to improve methods and capacities in paleodiet research. The sample is comprised of dental calculus from individuals from the Wari (600–1000 CE) and post-Wari periods (1000–1400 CE). Individuals from both time periods with stable carbon and nitrogen isotope data from the calculus are directly compared to the stable isotope results from human bone collagen, dental carbonates, and bone carbonates. Results from dental calculus show δ13C that range from -20.5 ‰ to −12.3 ‰, consistent with the use of C4 plants (maize) as a major component of the diet. The δ13C from calculus are isotopically lighter and more varied than those obtained from collagen, and this is likely explained by the distinct composition of calculus compared to that of bone collagen and apatite. The δ15N from calculus range from +8.9 ‰ to +18.8 ‰, which is heavier than expected for highland maize-based diets in the Peruvian Andes. This may be explained by 15N enrichment from aridity or crop fertilization (e.g., camelid dung), especially during the post Wari period, a time of social upheaval and severe drought. The differences in stable isotope values may also be partially explained by the diet-sourced isotopes in bone collagen (e.g., averaging the last 5–10 years of life) versus that of dental calculus (e.g., averaging the last few years of life). Documenting these differences in stable isotope ratios from distinct components may aid in richer understandings of past diets and provide additional ways to compare diet through time and space. Indeed, as more researchers begin analyzing the stable isotope ratios from dental calculus, we can minimize destructive techniques and make direct comparisons between studies that use dental calculus. We suggest that this is an important expansion of our analytical toolkit.