Bud Stage Research Articles

Exogenous melatonin enhances the continuous cropping tolerance of Tartary buckwheat (Fagopyrum tataricum) by regulating the antioxidant defense system.

The yield of Tartary buckwheat is significantly affected by continuous cropping. Melatonin plays a crucial role in plant defense mechanisms against abiotic stresses. However, the relationship between melatonin and continuous cropping tolerance remains unclear. This study aimed to analyze the physiological mechanism of melatonin in enhancing the continuous cropping tolerance (abiotic stress) of Tartary buckwheat. A field experiment was conducted on Tartary buckwheat cultivar Jinqiao 2 under continuous cropping with five melatonin application rates, 0 (Control), 10, 50, 100, and 200 μmol L-1, applied during the early budding stage. The chlorophyll content, antioxidant enzyme activity, osmolyte and auxin (IAA) contents, root activity, rhizosphere soil nutrient content, and agronomic traits of Tartary buckwheat initially increased and then decreased with an increase in the concentration of exogenous melatonin application, with the best effects observed at 100 μmol L-1. Compared with the Control treatment, the 100 μmol L-1 treatment decreased the contents of malondialdehyde, superoxide anion free radical, and abscisic acid (ABA) by an average of 28.79%, 27.08%, and 31.64%, respectively. Exogenous melatonin treatment significantly increased the yield of Tartary buckwheat under continuous cropping. Plants treated with 10, 50, 100, and 200 μM respectively had 1.88, 2.01, 2.20, and 1.78 times higher yield than those of the Control treatment. In summary, melatonin treatment, particularly 100 μmol L-1, enhanced the continuous cropping tolerance of Tartary buckwheat by increasing antioxidant capacity and osmotica content, coordinating endogenous ABA and IAA content levels, and delaying senescence, ultimately increasing yield.

Effect of Subsurface Drainage in Regulating Water on Desalinization and Microbial Communities in Salinized Irrigation Soils

In order to achieve water conservation and salt control in saline irrigation areas and improve the soil ecological environment of farmland in irrigation areas, this study carried out a field trial in 2020–2021 on edible sunflowers planted in saline subsurface farmland in the Hetao Irrigation District. Three irrigation level treatments and a control setup under subsurface drainage were compared. The control was with no drainage and local conventional irrigation levels (the spring irrigation amount is 240 mm and the bud stage irrigation amount is 90 mm, CK); and the three irrigation levels were conventional irrigation (the spring irrigation amount is 240 mm and the bud stage irrigation amount is 90 mm, W1), medium water (the spring irrigation amount is 120 mm and the bud stage irrigation amount is 90 mm, W2), and low water (the spring irrigation amount is 120 mm and there is no irrigation in the bud stage, W3). The results showed that soil desalinization was best in the conventional irrigation (W1) treatment and lowest in the low-water treatment (W3) under subsurface drainage. The desalinization rate was 13.54% higher in the subsurface drainage than in the undrained treatment with the same amount of irrigation water. Under subsurface drainage, the medium-water treatment (W2) increased the diversity of soil microorganisms and the relative abundance of dominant phyla such as Ascomycetes, Chlorobacterium, Acidobacterium, and Ascomycetes among soil bacteria and Ascomycetes and Tephritobacterium amongst fungi. The average sunflower yield in the treatments under subsurface drainage increased by 32.37% compared with the undrained treatment, and the medium-water treatment (W2) was the most favorable for protein and essential amino acid synthesis. Structural equation modeling indicated that desalinization rate, irrigation water utilization efficiency, bacterial Chao1 abundance and Shannon diversity, and fungal Chao1 abundance and Shannon diversity were the major influences on sunflower yield. Based on the entropy weight method TOPSIS model, 15 indicators such as soil desalinization rate, soil microbial diversity, water and nitrogen utilization rate, and sunflower yield and quality were evaluated comprehensively for each water treatment of subsurface drainage farmland. It was found that the irrigation volume under tile drainage of 210 mm (W2) had the highest comprehensive score, which could improve the soil microenvironment of the farmland while realizing water conservation and salt control in salty farmland, increase the production of high-quality crops, and be conducive to the sustainable development of agriculture; it was the optimal irrigation treatment for the comprehensive effect. The results of this study are of great significance for the realization of efficient water conservation and salt control and the protection of food security and ecological safety in the Hetao Irrigation District.

Genome-wide identification, evolution, and expression analysis of the NAC gene family in chestnut (Castanea mollissima)

The NAC gene family is one of the most important transcription factor families specific to plants, responsible for regulating many biological processes, including development, stress response, and signal transduction. However, it has not yet been characterized in chestnut, an important nut tree species. Here, we identified 115 CmNAC genes in the chestnut genome, which were divided into 16 subgroups based on the phylogenetic analysis. Numerous cis-acting elements related to auxin, gibberellin, and abscisic acid were identified in the promoter region of CmNACs, suggesting that they play an important role in the growth and development of chestnut. The results of the collinear analysis indicated that dispersed duplication and whole-genome-duplication were the main drivers of CmNAC gene expansion. RNA-seq data of developmental stages of chestnut nut, bud, and ovule revealed the expression patterns of CmNAC genes. Additionally, qRT-PCR experiments were used to verify the expression levels of some CmNAC genes. The comprehensive analysis of the above results revealed that some CmNAC members may be related to chestnut bud and nut development, as well as ovule fertility. The systematic analysis of this study will help to increase understanding of the potential functions of the CmNAC genes in chestnut growth and development.

The Role of Galectin3, Tubulinβ, and Maspin in Promoting Tumor Budding in Colorectal Carcinoma and Their Clinical Implications.

Colorectal cancer (CRC) is a leading cause of death worldwide. Despite the advances in surgical and therapeutic management, tumor metastases and poor prognosis are still major problems. Tumor budding is a relevant prognostic factor in CRC, and it can predict tumor metastasis. Galectin3 is responsible for the development and progression of many cancers through the regulation of cell-cell/cell-matrix interactions and tumor cell invasion. Tubulin is a microtubule protein, and maspin is a serine protease inhibitor; both induce tumor cell invasion through the stimulation of epithelial-mesenchymal transition. This study aims to evaluate the relationship between the expression of galecin3, tubulinβ, and maspin in CRC and clinicopathological features, including tumor budding, their prognostic roles, and clinical implications using immunohistochemistry. Galectin3, tubulinβ, and maspin were detected in tumor cells in 95%, 65%, and 87.5% of cases and in stromal cells in 28.8%, 40%, and 0% of cases. High expression of galectin3 and tubulinβ expression either in tumor cells or stroma was significantly associated with aggressive tumor features such as lymph node metastasis, lymphovascular invasion, tumor budding, and advanced tumor stage. The nucleocytoplasmic expression of maspin in tumor cells showed a significant association with deeper tumor invasion, lymph node metastasis, tumor budding, and advanced tumor stage. Significant associations were found between high galectin3 tumor cell expression and nucleocytoplasmic maspin and shorter survival. High expression of galectin3, tubulinβ, and nucleocytoplasmic maspin were significantly associated with aggressive tumor features such as tumor invasion, metastasis, high tumor budding, and short survival in CRC. They could be used as biomarkers for tumor budding and tumor aggressiveness in CRC and may be considered for future target therapy.

Morphogenesis of fungiform papillae in developing miniature pigs

ObjectiveFungiform papillae contain taste buds and play a critical role in mastication and the gustatory system. In this study, we report a series of sequential observations of organogenesis of fungiform papillae in miniature pigs, as well as changes in the expression of BMP2, BMP4, Wnt5a, Sox2, and Notch1 signaling pathway components. DesignIn this study, we investigated the spatiotemporal expression patterns of BMP, Wnt, Sox2 and Notch in the fungiform papillae of miniature pigs at the bud stage (E40), cap stage (E50) and bell stage (E60). Pregnant miniature pigs were obtained, and the samples were processed for histological staining. Immunohistochemistry and real-time PCR were used to detect the mRNA and protein expression levels of BMP2, BMP4, Wnt5a, Sox2, and Notch1. ResultsAt E40, fungiform papillae were present on the anterior two-thirds of the tongue in a specific array and pattern. The fungiform papillae were enlarged and basically developed at E50 and were largest at the earlier stage (E60). Most of the BMP2 was concentrated in the epithelial layer and the connective tissue core of the fungal papilloma and gradually accumulated from E40-E60. BMP-4 was weakly expressed in the fungiform papillae epithelia, but BMP-4-positive cells were also observed in the developing tongue muscle at E50 and E60. Wnt5a-positive cells were observed in the fungiform papillae epithelia and developing tongue muscle at all three time points. Sox2-positive cells were observed only in fungiform papillae epithelial cells, and Notch1-positive cells could not be detected. ConclusionsThis study provides primary data regarding the morphogenesis and expression of developmental signals in the fungiform papillae of miniature pigs, establishing a foundation for further research in both this model and humans.

Floral Biology of Aquilaria sinensis (Lour.) Spreng

Aquilaria sinensis (Lour.) Spreng is a known medicinal plant producing agarwood. To date, studies on the floral biology of A. sinensis have been limited. In this study, the floral micro- and ultra-structures, pollen viability, stigma receptivity, and artificial pollination of A. sinensis were investigated. The results show that the flower’s development can be divided into five stages, including the flower bud differentiation stage (2–7 d), the flower bud stage (7–13 d), the flowering stage (14 d), the pollination stage (14–15 d), and the fruiting stage (15–25 d). The floral organs mainly include: 4–6 split calyces, 10 petals, 10 stamens, and 1 pistil. The anther is oblong, with four pollen sacs the pollen is round, with maximum viability 6 h after flowering; and stigma receptivity is at its best 6 h before flowering. Artificial pollination is successful in the field. These findings will provide useful information for producing and breeding A. sinensis.

Cyclic Stretching Enhances Angiocrine Signals at Liver Bud Stage from Human Pluripotent Stem Cells in Two-Dimensional Culture.

Angiocrine signals during the development and growth of organs, including the liver, intestine, lung, and bone, are essential components of intercellular communication. The signals elicited during the liver bud stage are critical for vascularization and enhanced during the intercellular communication between the cells negative for kinase insert domain receptor (KDR) (KDR- cells) and the cells positive for KDR (KDR+ cells), which constitute the liver bud. However, the use of a human pluripotent stem cell (hPSC)-derived system has not facilitated the generation of a perfusable vascularized liver organoid that allows elucidation of liver development and has great potential for liver transplantation. This is largely owing to the lack of fundamental understanding to induce angiocrine signals in KDR- and KDR+ cells during the liver bud stage. We hypothesized that mechanical stimuli of cyclic stretching/pushing by the fetal heart adjacent to the liver bud could be the main contributor to promoting angiocrine signals in KDR- and KDR+ cells during the liver bud stage. In this study, we show that an organ-on-a-chip platform allows the emulation of an in vivo-like mechanical environment for the liver bud stage in vitro and investigate the role of cyclic mechanical stretching (cMS) to angiocrine signals in KDR- and KDR+ cells derived from hPSCs. RNA sequencing revealed that the expression of genes associated with epithelial-to-mesenchymal transition, including angiocrine signals, such as hepatocyte growth factor (HGF) and matrix metallopeptidase 9 (MMP9), were increased by cMS in cocultured KDR- and KDR+ cells. The expression and secretions of HGF and MMP9 were increased by 1.98- and 1.69-fold and 3.23- and 3.72-fold with cMS in the cocultured KDR- and KDR+ cells but were not increased by cMS in the monocultured KDR- and KDR+ cells, respectively. Finally, cMS during the liver bud stage did not lead to the dedifferentiation of hepatocytes, as the cells with cMS showed hepatic maker expression (CYP3A4, CYP3A7, ALB, and AAT) and 1.71-fold higher CYP3A activity than the cells without cMS, during 12 day-hepatocyte maturation after halting cMS. Our findings provide new insights into the mechanical factors during the liver bud stage and directions for future improvements in the engineered liver tissue.

Chalcogen bonding catalysis.

Catalysts play a major role in chemical synthesis, and catalysis is considered to be a green and economic process. Catalysis is dominated by covalent interactions between the catalyst and substrate. The design of non-covalent catalysts came into limelight only recently. Hydrogen bonding (HB) catalysts are well established among non-covalent catalysts, including asymmetric HB catalysts. Though halogen bonding (XB) catalysis and its asymmetric version are gaining admiration, non-covalent chalcogen bonding catalysis (ChB) is in the budding stage. This tutorial review will focus on the recently evolved chalcogen bonding catalysis and emphasis will be given to the chalcogen bonding of chiral molecules. Since successful enantioselective chalcogen bonding catalysis is yet to be reported, this review will focus on the basics of non-covalent bonding catalysis, chalcogen bonding catalysis, chiral chalcogenide synthesis, rigidification of transition states by ChB, stabilization of cations by chiral chalcogens, details of unsuccessful asymmetric chalcogen bonding catalysis, enantioseparation of racemic molecules using ChB, and the existence of ChB in chiral biomolecules.

DYNAMICS OF GREEN BIOMASS AND DRY MATTER YIELD FORMATION IN ESPARCET AS AFFECTED BY ELEMENTS OF CULTIVATION TECHNOLOGY

Perennial legume crops are crucial for solving the problem of feed protein. In addition, due to the ability to fix atmospheric nitrogen, they constitute the basis of biological farming in today’s agriculture. Among a number of perennial legume crops, esparcet deserves special attention, as it ensures a steady yield of green biomass. It is not highly demanding on soil fertility. Also, it is a good honey plant and medicinal crop. The article discusses the influence of the elements of cultivation technology on the yield of green biomass and dry matter in esparect. The highest yields of green biomass and dry matter of the biomass for 2 harvests were obtained for harvesting at the start of the budding stage at a sowing rate of 6 million seeds/ha, a row width of30 cm, and the application of fertiliser N30P60K90: 43.4 t/ha of green biomass and 11.0 t/ha of dry matter. We found that the influence of the studied factors was not the same. The highest yields were obtained at a sowing rate of 6 million seeds/ha, while an increase in the sowing rate to 7 million seeds/ha or a decrease to 5 million seeds/ha led to a decrease in yield. The lowest yields were recorded in a control treatment at a sowing rate of 5 million seeds/ha: 37.1 t/ha of green biomass and 8.1 t/ha of dry matter. The highest yields were obtained at a sowing rate of 6 million seeds/ha: 38.4 t/ha of green biomass and 8.7 t/ha of dry matter. An increase in the sowing rate to 7 million seeds/ha did not increase the yield, but led to a slight decrease in the yield of dry biomass and dry matter: 37.8 t/ha and 8.6 t/ha, respectively. The factor of fertilisation was less influent. When nitrogen was added to the phosphorus-potassium fertiliser N30P60K90, we recorded the highest yields: 43.4 t/ha of dry biomass and 11.0 t/ha of dry matter. With an increase in nitrogen rate to N45P60K90, the yield of green biomass remained at the same level; however, the yield of dry matter slightly decreased to 10.8 t/ha.

Analysis on morphological characteristics and identification of candidate genes during the flowering development of alfalfa.

Flower development is a crucial and complex process in the reproductive stage of plants, which involves the interaction of multiple endogenous signals and environmental factors. However, regulatory mechanism of flower development was unknown in alfalfa (Medicago sativa). In this study, the three stages of flower development of 'M. sativa cv. Gannong No. 5' (G5) and its early flowering and multi flowering mutant (MG5) were comparatively analyzed by transcriptomics. The results showed that compared with late bud stage (S1), 14287 and 8351 differentially expressed genes (DEGs) were identified at early flower stage (S2) in G5 and MG5, and 19941 and 19469 DEGs were identified at late flower stage (S3). Compared with S2, 9574 and 10870 DEGs were identified at S3 in G5 and MG5, respectively. Venn analysis revealed that 547 DEGs were identified among the three comparison groups. KEGG pathway enrichment analysis showed that these genes were involved in the development of alfalfa flowers through redox pathways and plant hormone signaling pathways. Key candidate genes including SnRK2, BSK, GID1, DELLA and CRE1, for regulating the development from buds to mature flowers in alfalfa were screened. In addition, differential expression of transcription factors such as MYB, AP2, bHLH, C2C2, MADS-box, NAC, bZIP, B3 and AUX/IAA also played an important role in this process. The results laid a theoretical foundation for studying the molecular mechanisms of the development process from buds to mature flowers in alfalfa.

Development of an AI-Assisted Embryo Selection System Using Iberian Ribbed Newts for Embryo-Fetal Development Toxicity Testing.

The 3Rs (Reduction, Refinement, Replacement) principle is driving the need for alternative methods in animal testing. Despite advancements in in vitro testing, complex systemic toxicity tests still necessitate in vivo approaches. The aim of this study was to develop a developmental toxicity test protocol using the Iberian ribbed newt (Pleurodeles waltl) as a model organism, integrating AI image analysis for embryo selection to improve test accuracy and reproducibility. We established a developmental toxicity test protocol based on the zebrafish test. Gonadotropin was administered to induce ovulation, and in vitro fertilization was performed. Embryos were imaged at 5-6 and 6-7 h post-fertilization. AI image analysis was utilized to assess embryo viability. The test chemical was administered 24-48 h post-fertilization, and morphological changes were observed daily until day 8. Additionally, a time-lapse photography system was constructed to monitor embryonic development. Out of 24 cultured embryos, 75% developed normally to the late tail bud stage or initial hatching stage, whereas 25% experienced developmental arrest or death. AI image analysis achieved high accuracy in classifying embryos, with overall accuracies of 92.0% and 92.9% for two learning models. The AI system demonstrated higher precision in the selection of viable embryos compared to visual inspection. The Iberian ribbed newt presents a viable alternative model for developmental toxicity testing, adhering to the 3Rs principles. The integration of AI image analysis substantially enhances the accuracy and reproducibility of embryo selection, providing a reliable method for evaluating developmental toxicity in pharmaceuticals.

PHYSIOLOGICAL AND BIOCHEMICAL PROPERTIES OF SOYBEAN CULTIVARS INFECTED WITH PHYTOPATHOGENIC FUNGI

An investigation on soybean (Glycine max L.) commenced at the experimental field of the Institute of Genetics and Plant Experimental Biology, Academy of Sciences, Republic of Uzbekistan. The purposive study aimed to determine the effects of Fusarium solani phytopathogenic micromycetes on the physiological and biochemical composition of five soybean cultivars, viz., Sochilmas, Genetic-1, Nafis, Tomaris, and Baraka. The results revealed in the budding and flowering stages, the soybean cultivar leaves infected with F. solani showed decreased amounts of chlorophyll a and b compared with the healthy plants (control). In the control comparison against the soybean variants with phytopathogenic micromycetes, some soybean cultivars showed enhanced contents of carotenoids in the leaves, and others revealed a decline in carotenoids to varying degrees. The peroxidase enzyme activity was higher in soybean cultivars Tomaris and Nafis artificially infected with F. solani than the other cultivars. It was evident that the peroxidase enzyme activity under the influence of F. solani in the leaves of studied soybean cultivars increased by 20.76%, 43.6%, and 35.4%, respectively, in Baraka, Tomaris and Nafis cultivars. Results further indicated that under the influence and stressful conditions of F. solani, the activity of the polyphenol oxidase enzyme enhanced by 84.1% and 117.1%, respectively, in soybean cultivars Tomaris and Nafis. The phenylalanine-ammonia-lyase enzyme activity was also higher in the said cultivars with F. solani infection compared with the control. The earlier situation confirmed that the soybean plant leaves’ physiological and biochemical parameters are closely associated with the phytopathogenic micromycetes

Influences of Growth Stage and Ensiling Time on Fermentation Characteristics, Nitrite, and Bacterial Communities during Ensiling of Alfalfa.

This study examined the impacts of growth stage and ensiling duration on the fermentation characteristics, nitrite content, and bacterial communities during the ensiling of alfalfa. Harvested alfalfa was divided into two groups: vegetative growth stage (VG) and late budding stage (LB). The fresh alfalfa underwent wilting until reaching approximately 65% moisture content, followed by natural fermentation. The experiment followed a completely randomized design, with samples collected after the wilting of alfalfa raw materials (MR) and on days 1, 3, 5, 7, 15, 30, and 60 of fermentation. The growth stage significantly influenced the chemical composition of alfalfa, with crude protein content being significantly higher in the vegetative growth stage alfalfa compared to that in the late budding stage (p < 0.05). Soluble carbohydrates, neutral detergent fiber, and acid detergent fiber content were significantly lower in the vegetative growth stage compared to the late budding stage (p < 0.05). Nitrite content, nitrate content, nitrite reductase activity, and nitrate reductase activity were all significantly higher in the vegetative growth stage compared to the late budding stage (p < 0.05). In terms of fermentation parameters, silage from the late budding stage exhibited superior characteristics compared to that from the vegetative growth stage. Compared to the alfalfa silage during the vegetative growth stage, the late budding stage group exhibited a higher lactate content and lower pH level. Notably, butyric acid was only detected in the silage from the vegetative growth stage group. Throughout the ensiling process, nitrite content, nitrate levels, nitrite reductase activity, and nitrate reductase activity decreased in both treatment groups. The dominant lactic acid bacteria differed between the two groups, with Enterococcus being predominant in vegetative growth stage alfalfa silage, and Weissella being predominant in late budding stage silage, transitioning to Lactiplantibacillus in the later stages of fermentation. On the 3rd day of silage fermentation, the vegetative growth stage group exhibited the highest abundance of Enterococcus, which subsequently decreased to its lowest level on the 15th day. Correlation analysis revealed that lactic acid bacteria, including Limosilactobacillus, Levilactobacillus, Loigolactobacillus, Pediococcus, Lactiplantibacillus, and Weissella, played a key role in nitrite and nitrate degradation in alfalfa silage. The presence of nitrite may be linked to Erwinia, unclassified_o__Enterobacterales, Pantoea, Exiguobacterium, Enterobacter, and Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium.

Contribution of insect flower visitors on macadamia nut set, retention and yield in central Kenya

The aim of this study was to evaluate the contribution of insects that visit macadamia flowers to nut set, retention, nut-in-shell, and kernel yields. The study was conducted at the Macadamia Research Centre in Kandara, Murang'a County, in three flowering cycles (cropping), from August 2020 to May 2022. Nut set, retention, and yield were assessed by randomly selecting twelve trees that were in full bloom at the study orchard in each of the flowering cycles. On each of the twelve trees, four branches of the same size were selected and tagged for the study. The branches were about 1 to 1.5 metres high from the ground. On each branch, one raceme at the bud stage was randomly selected and one of the four treatments administered. The treatments were (i) bagged during the day with mesh nets, (ii) bagged at night, (iii) bagged throughout the flowering season, excluding all insects, and (iv) racemes were left unbagged, thus having unlimited flower visitation by insects. There were significant differences on nut-in-shell yield (mass) (P≤0.05) in flowers that were unbagged (68.23 ± 4.03), bagged at night (61.50 ± 3.51), bagged during the day (6.53 ± 1.05) and those that were bagged throughout (4.45 ± 0.95). Racemes that had flower visitors fully excluded resulted in low nut-in-shell production. The initial nut set, retention, and ultimately the nut-in-shell yields were significantly increased in flowers that were left unbagged, thus insects had unlimited access. Macadamia nut set, retention, and ultimate yield (nuts-in-shell and kernel) is largely dependent on the presence of insect flower visitors.

Effect of Light Intensity on Phenology and Morphological Characteristics of Aglaonema Bigroy (Aglaonema sp.) Leaves

Leaf phenology is the period of leaf development that is influenced by environmental factors. One environmental factor that is very influential is light intensity. Limited information on the phenology and morphological characters of aglaonema results in a lack of knowledge about the appropriate environmental requirements for the growth and development of its leaves. The research aims to analyze the phenology and morphological characteristics of Aglaonema sp. leaves at different light intensities. The research used a single factor Completely Randomized Design experiment consisting of three treatment levels, namely P0 without shade, P1 with 50% shade, and P2 with 75% shade. The treatment was repeated nine times so that a total of 27 experimental unit samples were obtained. The sample was taken using purposive sampling technique. Observations were made at the stages of leaf buds, mature leaves, wilted leaves, leaf color, leaf size, stalk length, and environmental factors. Qualitative data was analyzed descriptively and quantitative data was analyzed using the ANOVA test and 95% DNMRT follow-up test. The results of the research showed that there was a difference in the average length of the leaf development phase in the shade treatment which was higher than without shade, the average length of this phase in the three treatments was 58, 81, and 85 days respectively. Meanwhile, there are also differences in the morphological characteristics of the leaves, namely that the shade treatment has an average leaf size and petiole length that is greater than without shade. These sizes were successively in the three treatments, namely mean leaf width 6.856, 8.411, and 8.589 cm, and leaf length 15.167, 17.867, and 18.067 cm, and leaf petiole length 5.989, 7.733, and 7.989 cm. The environmental factor that influences is the intensity of light with the most optimal paranet shade, namely paranet density of 75%.

Emerging Insights into the Roles of the Rhizome-Culm System in Bamboo Shoot Development through Analysis of Non-Structural Carbohydrate Changes.

Non-structural carbohydrates (NSCs) required for bamboo shoot development, the critical stage that determines the yield of a bamboo stand, originate from the parent bamboo with the complex underground system. However, the metabolic mechanism of NSCs in the rhizome-culm system during bamboo shoot development remains unclear. In this study, we focused on the changes of NSCs in the rhizome-culm system and used anatomical, physiological, and biochemical methods to investigate the metabolism of NSCs in bamboo shoots of Phyllostachys edulis and the role of NSCs supply in the parent bamboo at different ages. The results showed that NSCs were accumulated and consumed from the bottom to the top in a bamboo shoot, which was consistent with the developmental pattern. The starch granules were stored in advance. The bamboo sheath stored starch from the dormant stage of shoot buds. The functions of culms and rhizomes showed age-dependent differences. Adult culms showed the highest capacity to provide NSCs, with more stored NSCs and higher β-amylase activity. Conversely, young culms seemed to prefer their growth, while old culms tended to store starch. Accordingly, adult rhizomes preferred sugar transport due to the lowest starch storage, lower ADP-glucose pyrophosphorylase (AGPase) activity, and higher β-amylase activity, while young and old rhizomes tended to prefer starch storage. These results provide a basis for further understanding of nutrient metabolism in bamboo stands.

Loss function of NtGA3ox1 delays flowering through impairing gibberellins metabolite synthesis in Nicotiana tabacum.

Flowering time, plays a crucial role in tobacco ecological adaptation besides its substantial influence on tobacco production and leaf quality. Meanwhile, it is sensitive to biotic or abiotic challenges. The plant hormones Gibberellins (GAs), controlling a number of metabolic processes, govern plants growth and development. In this study, we created a late flowering mutant HG14 through knocking out NtGA3ox1 by CRISPR/Cas9. It took around 13.0 and 12.1 days longer to budding and flowering compared to wild type Honghuadajinyuan. Nearly all of the evaluated agronomic characters deteriorated in HG14, showing slower growth and noticeably shorter and narrower leaves. We found that NtGA3ox was more prevalent in flowers through quantitative reverse transcription PCR analysis. Transcriptome profiling detected 4449, 2147, and 4567 differently expressed genes at the budding, flowering, and mature stages, respectively. The KEGG pathway enrichment analysis identified the plant-pathogen interaction, plant hormone signal transduction pathway, and MAPK signaling pathway are the major clusters controlled by NtGA3ox1 throughout the budding and flowering stages. Together with the abovementioned signaling pathway, biosynthesis of monobactam, metabolism of carbon, pentose, starch, and sucrose were enriched at the mature stage. Interestingly, 108 up- and 73 down- regulated DEGs, impairing sugar metabolism, diterpenoid biosynthesis, linoleic and alpha-linolenic acid metabolism pathway, were continuously detected accompanied with the development of HG14. This was further evidenced by the decreasing content of GA metabolites such as GA4 and GA7, routine chemicals, alkaloids, amino acids, and organic acids Therefore, we discovered a novel tobacco flowering time gene NtGA3ox1 and resolved its regulatory network, which will be beneficial to the improvement of tobacco varieties.

Multi-locus genome-wide association study and genomic prediction for flowering time in chrysanthemum.

Multi-locus GWAS detected several known and candidate genes responsible for flowering time in chrysanthemum. The associations could greatly increase the predictive ability of genome selection that accelerates the possible application of GS in chrysanthemum breeding. Timely flowering is critical for successful reproduction and determines the economic value for ornamental plants.To investigate the genetic architecture of flowering time in chrysanthemum, a multi-locus genome-wide association study (GWAS) was performed using a collection of 200 accessions and 330,710 single-nucleotide polymorphisms (SNPs) via 3VmrMLM method. Five flowering time traits including budding (FBD), visible colouring (VC), early opening (EO), full-bloom (OF) and senescing (SF) stages, plus five derived conditional traits were recorded in two environments. Extensive phenotypic variations were observed for these flowering time traits with coefficients of variation ranging from 6.42 to 38.27%, and their broad-sense heritability ranged from 71.47 to 96.78%. GWAS revealed 88 stable quantitative trait nucleotides (QTNs) and 93 QTN-by-environment interactions (QEIs) associated with flowering time traits, accounting for 0.50-8.01% and 0.30-10.42% of the phenotypic variation, respectively. Amongst the genes around these stable QTNs and QEIs, 21 and 10 were homologous to known flowering genes in Arabidopsis; 20 and 11 candidate genes were mined by combining the functional annotation and transcriptomics data, respectively, such as MYB55, FRIGIDA-like, WRKY75 and ANT. Furthermore, genomic selection (GS) was assessed using three models and seven unique marker datasets. We found the prediction accuracy (PA) using significant SNPs identified by GWAS under SVM model exhibited the best performance with PA ranging from 0.90 to 0.95. Our findings provide new insights into the dynamic genetic architecture of flowering time and the identified significant SNPs and candidate genes will accelerate the future molecular improvement of chrysanthemum.

Plugging the Gaps in the Global PhenoCam Monitoring of Forests—The Need for a PhenoCam Network across Indian Forests

Our understanding of the impact of climate change on forests is constrained by a lack of long-term phenological monitoring. It is generally carried out via (1) ground observations, (2) satellite-based remote sensing, and (3) near-surface remote sensing (e.g., PhenoCams, unmanned aerial vehicles, etc.). Ground-based observations are limited by space, time, funds, and human observer bias. Satellite-based phenological monitoring does not carry these limitations; however, it is generally associated with larger uncertainties due to atmospheric noise, land cover mixing, and the modifiable area unit problem. In this context, near-surface remote sensing technologies, e.g., PhenoCam, emerge as a promising alternative complementing ground and satellite-based observations. Ground-based phenological observations generally record the following key parameters: leaves (bud stage, mature, abscission), flowers (bud stage, anthesis, abscission), and fruit (bud stage, maturation, and abscission). This review suggests that most of these nine parameters can be recorded using PhenoCam with &gt;90% accuracy. Currently, Phenocameras are situated in the US, Europe, and East Asia, with a stark paucity over Africa, South America, Central, South-East, and South Asia. There is a need to expand PhenoCam monitoring in underrepresented regions, especially in the tropics, to better understand global forest dynamics as well as the impact of global change on forest ecosystems. Here, we spotlight India and discuss the need for a new PhenoCam network covering the diversity of Indian forests and its possible applications in forest management at a local level.

Stages of Development and Solvents Determine the Anticancer Potential of Mountain Arnica (Arnica montana L.) Inflorescence Extracts

In recent years, new sources of secondary metabolites (SMs) in medicinal plants have been identified, and the introduction of these plants into field conditions has been carried out to obtain chemically diverse standardized raw material (RM). An example is mountain arnica Arnica montana L., one of Europe’s endemic endangered medicinal plant species, commonly used in pharmacy, cosmetics, and medicine. Its inflorescences (Arnicae flos) are characterized by anti-inflammatory, antiradical, antioxidant, antibacterial, antifungal, and antitumor properties. The main goals of the present research included: (i) characterization of the chemical composition of the inflorescences of A. montana harvested in different development stages; and (ii) presentation of the role of the development stage and different extraction methods in the antitumor activity of extracts through analyses of apoptosis, autophagy, and necrosis induction in human cervical carcinoma HeLa, human colon carcinoma HT29, and human colon metastatic carcinoma SW620 cell lines. The development stage was found to modify the composition of pharmacologically active substances, e.g., sesquiterpene lactones (SLs), flavonoids (Fs), and essential oil (EO), in arnica inflorescences. The content of Fs and EO increased during flowering to the full flowering phase; however, the highest content of SLs was noted in the full flowering phase and at the end of flowering. More promising results, i.e., a relatively high level of apoptosis and a low level of necrosis induced by the arnica extracts, were demonstrated in the HeLa cell line (full flowering; concentration: 0.5 µL/mL), the HT29 cell line (beginning of flowering; concentration: 0.5 µL/mL), and the SW620 cell line (stage of yellow buds; concentration: 1 µL/mL). This extremely valuable medicinal plant species provides a very broad range of RMs (e.g., inflorescences, rhizomes, roots, achenes, and all plant); therefore, attention should be paid to the more frequent use of water as a solvent in studies on the biological activity of mountain arnica extracts.