Brown Trout Populations Research Articles

Changes in the fish community of the Czarna Hańcza River (NE Poland) after a fish kill caused by a wastewater treatment plant failure

Abstract Mass fish kills caused by wastewater treatment plant (WWTP) failure are uncommon. In this study, we analyzed the recovery of the fish community in the Czarna Hańcza River after a fish kill caused by a WWTP incident in Suwałki in 2018. The research focused on brown trout, the dominant fish species in this river. The incident lasted about six hours and accounted for 7% of the mean river’s flow during the accident. The fish population recovered quickly, and ten months after the fish kill, the number of fish species and their abundance were similar to the pre-incident state, but the species structure was different. In subsequent years, fish species richness decreased conspicuously, while their numbers remained at a high, relatively constant level. Species that are more resistant to difficult environmental conditions, such as white bream and European perch, returned to the river first. Concurrently with the improvement of environmental conditions, more demanding species, including brown trout, began to dominate in the river. Fulton’s condition factors decreased significantly as the river self-purified and the density of the brown trout population increased (P < 0.05). Our results indicated that the brown trout population was able to recover relatively quick, presumably because of stocking. Other species that were not stocked required more time to recover.

Current and Historical Genetic Variability of Native Brown Trout Populations in a Southern Alpine Ecosystem: Implications for Future Management

The highly polymorphic taxon European brown trout (genus Salmo) has high phenotypic plasticity, displaying a complex pattern of morphological and life-history variation, contributing to taxonomic confusion. Three main mitochondrial lineages (Adriatic, Mediterranean, and marmoratus) developed during the Pleistocene climatic events in the southern Alpine ecosystem. Here, the natural distribution of native brown trout S. trutta is controversial, complicated by introductions of the Atlantic strain. By investigating museum vouchers, this study aimed to retrace the historical presence of brown trout in the southern Alpine ecosystem before the beginning of mass introductions, which occurred since the middle of the 19th century. By examining the combination of historical and current genetic variability, this study aims to depict the actual impact of introductions of the introduced strain, increasing knowledge and informing conservation strategies and future management plans. The molecular approaches selected were: (i) sequencing of the mitochondrial control region and (ii) genotyping of the nuclear gene LDH-C1*. Vouchers dated the presence of the native Adriatic strain since 1821, while current genetic variability showed the widespread signature of introgression, a consequence of several decades of introductions. Focused plans to preserve local lineages are urgently needed, including short-term solution to avoid complete pauperization of this ecosystem.

A rapid and reliable detection procedure of Atlantic trout introgression at the diagnostic lactate dehydrogenase chain‐1 gene

AbstractThe Italian‐native Mediterranean brown trout (Salmo ghigii) is a seriously threatened freshwater fish, especially by anthropogenic hybridisation with the domestic strains of Atlantic origin that have been repeatedly released into the wild for angling. A PCR‐restriction fragment length polymorphism (RFLP) assay of the diagnostic lactate dehydrogenase chain‐1 (LDH‐C1) gene sequences has been routinely applied to distinguish exotic from native brown trout lineages and detect Atlantic introgression signals in the Mediterranean wild populations. Here, we used dermal swab DNA obtained from 28 wild trout to improve laboratory procedures to genetically characterise trout samples at the LDH‐C1gene through (1) a capillary electrophoresis analysis of the RFLP fragments and (2) the optimisation of a diagnostic single nucleotide polymorphism analysable through mini‐sequencing approaches. The developed methods were fully consistent with those obtained through the traditional approach, but their analytical process is almost entirely automated and digitalised, thus improving result readability and accuracy in the detection of alien introgressed traces in wild Mediterranean brown trout populations.

Genetic structure of Ponto-Caspian trout populations shows gene flow among river drainages and supports resident Salmo rizeensis as a genetically distinct taxon.

To assess the genetic structure of Ponto-Caspian brown trout (Salmo trutta complex) populations, we analyzed both mitochondrial DNA sequences and genotypes at 10 microsatellite loci of fish caught in the Black Sea and from nine river catchments in Georgia, flowing into either the Black or Caspian seas. The results show that: (1) there is substantial genetic differentiation among Ponto-Caspian trout populations, both among the populations of different nominal species and within those of the same species; (2) the genetic distance between conspecific populations from the Black and Caspian Sea basins exceeds that among the populations within the same basin. Moreover, within drainages, genetic distance correlates with the geographic distance; (3) the Black Sea itself is not a barrier to gene flow among the watersheds draining into the Black Sea; (4) some populations in the headwaters of the rivers draining into the Black Sea Basin fall out of this pattern and likely form a separate, non-anadromous (resident) taxon, previously described from northeastern Turkey as Salmo rizeensis. This hypothesis is supported by mitochondrial DNA phylogeny. The presence of both anadromous and resident populations in a single river basin calls for a substantial re-thinking of speciation patterns and taxonomy of Eurasian brown trout.

Population structure, genetic diversity and demographic patterns unveil massive Mediterranean brown trout manipulations in a protected area of the northern Apennines (Italy)

The Salmo trutta species complex includes threatened or intensively managed taxa. Domestic-Atlantic strains are widely farmed and massively introduced into the wild to support fisheries, although such practices seriously threaten native populations of Mediterranean brown trout through anthropogenic hybridization. Characterizing the distribution and genetic composition of wild populations across river catchments is crucial to identify conservation priorities and define appropriate management strategies. Here, we genotyped 586 brown trout at the diagnostic nuclear LDH-C1 gene and the mitochondrial D-loop fragment, to assess the conservation status of 33 sites in a protected area spanning river catchments from both the Adriatic and Tyrrhenian slopes in the northern Apennines (Italy). The results indicated a critical situation of widespread domestic-Atlantic introgression. Further analyses at 15 microsatellite loci on 159 individuals from 12 natural sites (along with 113 references from hatcheries) revealed similarity to hatchery stocks, higher genetic diversity and bottleneck signals in introgressed/exotic populations, consistently with relatively recent introductions of domestic-Atlantic individuals into wild sites. Conversely, the only native sites from a single river catchment on the Adriatic slope showed genetic distinctiveness, reduced diversity and demographic stability. We also found genetic evidence of a human-mediated introduction of allochthonous Mediterranean trout in a single wild site, as well as of a putative between-slopes translocation. We provide further insight into the occurrence and consequences of human manipulations on wild Mediterranean brown trout populations, contextually offering a reliable baseline for an ongoing conservation project aiming at preserving native populations of this endangered taxon.

Spatial Patterns of Neutral and Functional Genetic Variations along Dendritic Networks of Riverscape in Brown Trout Populations

Understanding how environmental gradients shape the spatial patterns of intraspecific genetic diversity is a central issue in ecological and evolutionary sciences. In riverine ecosystems, there is generally an increase in neutral genetic diversity downstream, as well as an increase in genetic differentiation among upstream populations. However, selective pressures may vary markedly along the upstream–downstream gradient, which could modify these patterns, but this has rarely been tested empirically. Here, we investigated how environmental gradients in a river network could shape the spatial patterns of intraspecific genetic diversity and differentiation in both neutral SNP markers and functional genetic markers putatively under natural selection (candidate SNPs associated with physiological functions and immune Major Histocompatibility Complex (MHC) loci) in wild brown trout populations. First, we showed that both the distance from the confluence and the centrality on the river network could explain the variation in genetic diversity and differentiation. Second, we found that both neutral and functional markers followed a similar pattern, with a higher genetic diversity and a lower genetic differentiation among populations that were more central and/or near to the confluence. This study highlights the importance of considering both the spatial and hydrological factors of a river network to understand and predict the role of dendritic connectivity in the spatial patterns of genetic diversity and differentiation in wild fish populations.

Bioenergetic responses of a stream food web to habitat restoration: interactions between Brown trout and invertebrate prey resources

Stream habitat restoration has the potential to rehabilitate degraded stream communities, but the bioenergetic impact of restoration on prey resources and utilization by salmonids has been understudied. We measured the responses of Brown trout (Salmo trutta) populations, aquatic and terrestrial prey resources, and prey resource utilization by trout, before (2008–2014) and after (2015–2020) large‐scale habitat restoration in the Upper Arkansas River, a previously listed US EPA superfund site located in the western United States. We observed significant increases in Brown trout populations following restoration, as well as complex alterations to invertebrate prey resources that generally resulted in increased benthic biomass but reductions in adult aquatic insects and terrestrial invertebrates. Population‐level metabolic demand by trout increased 25% after restoration, and prey utilization shifted with reduced consumption of adult aquatic insects and greater consumption of terrestrial invertebrates, relative to their availability. We observed reduced biomass of prey resources consumed by trout with increasing trout population size, and while the total number of invertebrates consumed increased after restoration, actual invertebrate biomass consumed decreased. Our results suggest that restoration was effective in increasing targeted Brown trout populations, but prey resources were altered by physical changes in habitat and increased resource utilization by trout. Habitat restoration projects that are primarily designed to increase trout populations may benefit by focusing on improving prey resources and utilization to support the bioenergetic needs of the restored fishery.

Tributary-Specific Contribution to a Lacustrine Mixed-Stock Fishery of Brown Trout Salmo trutta (Salmonidae) in a Diverse Sub-Arctic Watershed

Mixed-stock fisheries which simultaneously cause mortality amongst several populations of a species of fish may occur where separate stocks partially or completely overlap in the geographic area of harvest. This study aims to analyze the population-of-origin of adult and subadult adfluvial lacustrine brown trout Salmo trutta, exploited in a mixed-stock fishery in Upper Tuloma Reservoir in Eastern Fennoscandia, using otolith microchemistry. To evaluate the origin of migratory brown trout captured in these mixed-stock harvest fisheries, we undertook otolith sampling of brown trout juveniles in fluvial spawning and rearing habitats in the reservoir watershed, including 13 natal tributaries across the catchment of the reservoir in both Russia and Finland. Harvested adult and subadult brown trout otoliths were sampled from the impoundment in the central area of the reservoir and we analyzed for stock-related character differences to compare with known populations, using trace element signatures, with fish from the mixed stock fishery. The assignments-of-origin in the mixed-stock fishery-harvest samples did not follow the known distribution of populations sampled from natal streams in the watershed. For example, brown trout from the largest tributary catchments of Lotta River and Nota River were less represented in the mixed-harvest sample, which was contradictory to their contribution to the overall spawning and rearing areas of the catchment. These results point towards the importance of maintaining the diversity of different spawning and rearing tributaries required for brown trout recruitment into mixed stock fisheries, and the potential of the existence of population structure of brown trout in the reservoir catchment. Our information suggests that it is important to develop conservation and management strategies for natal habitats in multiple streams utilized by adfluvial lacustrine brown trout populations inhabiting various catchments and that are harvested in mixed-stock fisheries.

Native Population Structure beyond Hatchery Introgression in the Endemic Sicilian Trout

Brown trout populations living in the limit of the distribution of the species face challenging environmental conditions. In islands, this vulnerable situation is exacerbated by geographical isolation. Sicilian trout persist only in the south-eastern part of the island and, based on their morphological characteristics, they have been recognized as a distinct species named Salmo cettii. We present the most extensive genetic study on Sicilian trout, based on 213 individuals from nine different streams in four basins. Sequencing of the mitochondrial control region and genotyping of the LDH-C* locus and eight microsatellite markers were carried out to evaluate hatchery introgression from past stocking practices in natural populations and to estimate the gene diversity distribution in populations. Results showed that only trout from the Tellesimo River remained free of hatchery introgression. Gene diversity was low in this native population, but increased in the rest of the samples, probably because of the introduction of hatchery genes. Despite the high level of introgression, the distribution of gene diversity depicted a clear natural pattern of population structure related to the hydrographic hierarchy. Because they represent long evolutionary histories, Sicilian trout populations should be considered of high conservation priority and managed according to at least four different genetic units.

17β-Estradiol Can Induce Sex Reversal in Brown Trout

Hormones have been used to change phenotypic sex in many fish species. However, information specific to changing sex in brown trout Salmo trutta is lacking. This study compared the effectiveness of two different 17β-estradiol (estradiol) concentrations (20 mg/kg and 30 mg/kg) fed to brown trout for 60 days, beginning at initial feeding. At 456 days post-initial feeding, the 20 mg/kg and 30 mg/kg treatment groups were 84% and 86% female, respectively. These values were significantly higher than the 47% females observed in the control group which did not receive dietary estradiol. At the end of the 60-day estradiol treatment period, weight gain, percent weight gain, and feed conversion ratio were all significantly lower in the tanks of fish receiving estradiol than in the control tanks. Individual fish fed estradiol also weighed significantly less and were significantly shorter than the fish not receiving estradiol-coated feed. Mortality ranged from 1.0 to 2.4% among the treatments and was not significantly different. After 105 days post-initial feeding, weight gain, percent weight gain, and feed conversion ratio were not significantly different among the treatments. At 456 days post-initial feeding, individual fish were significantly longer and heavier in the 20 mg/kg estradiol treatment compared to the fish in the control treatment, and the fish in the 30 mg/kg estradiol treatment were similar to the other two treatments. This study is the first to document the successful sex reversal of brown trout using estradiol. While the estradiol treatments used in this study did not lead to complete feminization, the observed 85-to-15% female-to-male phenotypic ratio indicates the successful feminization of genetic males. The levels of feminization observed in this study are suitable for this initial step to potentially develop a YY male broodstock to control invasive brown trout populations.

Fish ecology and sediment conditions in freshwater pearl mussel (M. margaritifera) habitats

Stable, healthy populations of locally adapted brown trout (Salmo trutta) are crucial for the reproduction of the freshwater pearl mussel (Margaritifera margaritifera), as they serve as host fish in its life cycle. In the Interreg project Malšemuschel at the river Maltsch/Malše the hydro-morphology and sediment conditions were analysed regarding their influence on the biocoenoses of rhithral waters on granitic bedrock. In this paper, the fish fauna is highlighted in particular. It could be shown that sand on the one hand and finer fractions on the other impair watercourses and their fish fauna in different ways. While an increase in fine sediments (clay, silt) causes shifts in species compositions and leads to a steady decrease in abundances, sand rather influences the hydromorphology by reducing pools, flattening out the river bed and covering structures. Thus, sand seems to more directly influence the biomass and to cause a sharp deterioration of the fish fauna when a certain threshold is exceeded. Furthermore, it could be shown that brown trout populations are strongly related to the presence of natural structures e.g. large boulders or riparian vegetation.

Brown trout density effects on the macroinvertebrate and biofilm communities of headwater streams: a cage experiment

Salmo trutta is a key species of headwater streams that is able to influence the structure of these ecosystems through predation. Populations of this species are being threatened by climate change and hydrological alteration. In order to understand how their disappearance would affect the ecosystem structure of headwater streams, we used cage experiments to analyse different biofilm and macroinvertebrate structural parameters and the biodiversity of their communities under different trout densities. Due to a heavy rain event, our experiment was destroyed on the 10th day, but the role of trout as stream ecosystemic structure drivers was observed, as multiple parameters were modulated by their presence or absence. In the high-density treatments, a significant reduction in the biomass of macroinvertebrate families that fed on biofilms was observed due to direct predation on them, which caused the biofilms to be more autotrophic. A decrease in brown trout population densities could cause cascading trophic effects on the ecosystem structure of headwater streams

Migratory behavior and maternal origin of anadromous brown trout in the Baltic Sea

In the Baltic Sea, brown trout have been shown to make extensive use of the marine ecosystem; however, little is known regarding their movements between freshwater and marine environments or the interactions between individuals at different life history stages within a population. First, we analyzed the otolith structure and chemistry of hatchery origin (n = 26) anadromous brown trout with known life history and maternal origin to evaluate the efficacy of otolith microchemistry to distinguish between freshwater habitat in northern Sweden and marine rearing in the northern Baltic Sea. We then described the maternal origin and migration patterns of wild anadromous brown trout (n = 59) originating from the Ume and Vindel River catchment in Northern Sweden. Otolith microchemistry revealed that the majority (73%) of fish made 3 or more (up to 5) migrations to the marine environment prior to capture, presumably to feed. We observed a high degree of life history diversity, where trout first migrated to sea from age-1 to age-4 and either migrated back to freshwater once each year (presumably to spawn) or spent more than 1 yr in the marine environment before returning to freshwater. While 42% of the wild anadromous trout were judged to be the progeny of a resident mother, sex ratio, age, and inter-habitat migrations were similar for resident and anadromous progeny, highlighting the role of resident life histories in producing anadromous adults. Results reported here provide managers with new information to support the protection and enhancement of brown trout populations in places where they have declined.

Exploring metapopulation-scale suppression alternatives for a global invader in a river network experiencing climate change.

Invasive species can dramatically alter ecosystems, but eradication is difficult, and suppression is expensive once they are established. Uncertainties in the potential for expansion and impacts by an invader can lead to delayed and inadequate suppression, allowing for establishment. Metapopulation viability models can aid in planning strategies to improve responses to invaders and lessen invasive species' impacts, which may be particularly important under climate change. We used a spatially explicit metapopulation viability model to explore suppression strategies for ecologically damaging invasive brown trout (Salmo trutta), established in the Colorado River and a tributary in Grand Canyon National Park. Our goals were to estimate the effectiveness of strategies targeting different life stages and subpopulations within a metapopulation; quantify the effectiveness of a rapid response to a new invasion relative to delaying action until establishment; and estimate whether future hydrology and temperature regimes related to climate change and reservoir management affect metapopulation viability and alter the optimal management response. Our models included scenarios targeting different life stages with spatially varying intensities of electrofishing, redd destruction, incentivized angler harvest, piscicides, and a weir. Quasi-extinction (QE) was obtainable only with metapopulation-wide suppression targeting multiple life stages. Brown trout population growth rates were most sensitive to changes in age 0 and large adult mortality. The duration of suppression needed to reach QE for a large established subpopulation was 12years compared with 4 with a rapid response to a new invasion. Isolated subpopulations were vulnerable to suppression; however, connected tributary subpopulations enhanced metapopulation persistence by serving as climate refuges. Water shortages driving changes in reservoir storage and subsequent warming would cause brown trout declines, but metapopulation QE was achieved only through refocusing and increasing suppression. Our modeling approach improves understanding of invasive brown trout metapopulation dynamics, which could lead to more focused and effective invasive species suppression strategies and, ultimately, maintenance of populations of endemic fishes.

Regional environmental and climatic concerns on preserving native gene pools of a least concern species: Brown trout lineages in Mediterranean streams

The European brown trout, Salmo trutta, is a cold-adapted fish reported as a Least Concern species in the IUCN Red List. This species colonized new territories from southern refuges during the last glacial melting, but during the 20th century suffered from anthropic impacts on its habitats. The long-time survival of the species relies on the genetic diversity within and among populations. Brown trout is among the genetically most diverse vertebrate species; however, native populations in Mediterranean rivers have dramatically suffered of introgressive hybridization from extensive releases of evolutionary distant non-native Atlantic stocks. In addition, in Mediterranean rivers climate change will result in unsuitable conditions for the species during the 21st century. Using brown trout populations at the headstreams of a Pyrenean river as a model, this paper revised how hatchery releases have affected the native gene pools and how environmental and climatic variables controlled the amount of local introgression at intra-basin level. Introgressive hybridization was detected in all studied sites. Ten times larger divergence was observed among populations at tributaries than among populations along the main stem. A highly impacted population distributed in a long transect in the main stem suggested that hatchery fish move towards the main stem wherever released. From already highly impacted populations and despite the cessation of hatchery releases, warmer temperatures and lower precipitation expected from climate change will extend the introgressive hybridization along the basin, contributing to the extinction of the native gene pools. Based on available morphological distinction of native, hatchery and hybrid brown trout, we advocate the involvement of regional social groups (e.g. riverside dwellers, anglers, conservationists, hikers) in citizen science programs to detect the spread of non-native phenotypes along the rivers. These are cheap and fast methods to collaborate with fishery managers in the preservation and recovery of the regional native populations.

Ectoparasites population dynamics are affected by host body size but not host density or water temperature in a 32‐year long time series

Host density, host body size and ambient temperature have all been positively associated with increases in parasite infection. However, the relative importance of these factors in shaping long‐term parasite population dynamics in wild host populations is unknown due to the absence of long‐term studies. Here, we examine long‐term drivers of gill lice (Copepoda) infections in Arctic charr (Salmonidae) over 32 years. We predicted that host density and body size and water temperature would all positively affect parasite population size and population growth rate. Our results show that fish size was the main driver of gill lice infections in Arctic charr. In addition, Arctic charr became infected at smaller sizes and with more parasites in years of higher brown trout population size. Negative intraguild interactions between brown trout and Arctic charr appear to drive smaller Arctic charr to seek refuge in deeper areas of the lake, thus increasing infection risk. There was no effect of host density on the force of infection, and the relationship between Arctic charr density and parasite mean abundance was negative, possibly due to an encounter‐dilution effect. The population densities of host and parasite fluctuated independently of one another. Water temperature had negligible effects on the temporal dynamics of the gill lice population. Understanding long‐term drivers of parasite population dynamics is key for research and management. In fish farms, artificially high densities of hosts lead to vast increases in the transmission of parasitic copepods. However, in wild fish populations fluctuating at natural densities, the surface area available for copepodid attachment might be more important than the density of available hosts.

Is recruitment of brown trout in a New Zealand river driven by parental spawning investment, density dependence, or environmental factors?

This study addresses the primary factors driving young-of-the-year (YoY) brown trout Salmo trutta abundance and population dynamics through the Austral summer in an important spawning tributary of a large New Zealand river. We measured the key traits and spawning investment of spawners; YoY density and movement; and environmental characteristics important for juvenile trout. In comparison to their native European range, we found high rates of pre-spawning mortality, low density of deposited eggs and reduced spawning efficiency of adult brown trout. Parental spawning investment did not affect spring juvenile trout distribution, a result likely related to a mismatch between YoY abundance and densities of eggs deposited by adults at the sampled locations. Spatial differences in seasonal dynamics of YoY density were likely related to the diversity of environmental conditions affecting habitat suitability for post-larval brown trout along the stream. Significant correlations between juvenile trout loss rate and both YoY density and downstream migration were observed only for the lowland stream segments, which had the highest spawning investment from diadromous adults, indicating the importance of these locations for recruitment. This study highlights knowledge gaps in species-environment interactions and the reproductive ecology of brown trout in New Zealand.

Using Merged Pre-Fishery Abundance as a Parameter Evaluating the Status of Atlantic Salmon and Anadromous Brown Trout Populations: A Norwegian Case Study

Methods used to monitor variation in population sizes in both Atlantic salmon and anadromous brown trout (sea trout) have been widely used in Norway the last 20 years. However, a national management regime, based on population data, has only been established for one of the two species, the Atlantic salmon. One prerequisite for using this “one species” model is that there is negligible interspecific competition between salmon and trout in the rivers. This may, however, be an oversimplification of the real situation. The pre-fishery abundance (PFA), monitored with combination of underwater video systems, snorkelling counts, and catch statistics will, in most rivers, include both salmon and Sea Trout. In the present study, we estimated a total PFA for rivers, or groups of rivers, in eight regions in Norway in 2019. The total size of each river system was measured by abiotic factors such as river area, river length, annual mean water flow, and size of precipitation field; additionally, one biotic factor, smolt age, was used to standardise PFA data across regions. A comparison shows that the standardised total PFA of salmon and trout varies across regions where the highest estimated PFA was four times higher than the lowest. Compared to the traditional one-species approach, the merged PFA data show a different population status in the eight regions. The difference in the two approaches was mainly linked to the variation in size in anadromous brown trout populations. Merging data from salmon and trout populations in defined regions may be a better input in a management model than the current model used by the Norwegian Scientific Committee for Salmon Management (VRL).

Brown Trout Upstream Passage Performance for a Fishway with Water Drops between Pools beyond Fish Passage Design Recommendations

This work aims to assess brown trout (Salmo trutta) passage through a free-flow pool-weir-type fishway with hydrodynamic notches and extreme water drops between pools. It consists of an old-school fishway design, commonly constructed in salmon rivers of Spain during the period of 1950–1980. To assess their performance, a field test was designed with confined trial conditions during the spawning migratory season. The mean water drop between pools was 0.65 m and the total water height considered for the trial was 11.8 m. The monitoring was carried out using PIT telemetry. The initial hypothesis, considering the fishway design and assessment guidelines, classified this structure as hardly insurmountable. Results showed an ascent success of 19% with a median transit time of 29.1 min/m of ascended height. Larger fish and fishway sections with lower values of volumetric power dissipation were related to a better performance in the passage. The results suggest that in certain circumstances, such as limited construction areas where other design or management options are difficult to implement (e.g., canyons), this type of fishway may be an alternative for the upstream passage of at least a small proportion of the brown trout population, although a selection effect is expected.

A multifaceted index of population health to detect risk-prone populations and underlying stressors in wildlife

Local declines of wild populations represent the most visible part of biodiversity loss, and their detection often relies on long-term surveys. An alternative to identify risk-prone populations is to use indicators informing on their general health (i.e., their general fitness and ability to cope with changing environment) based on simple and complementary parameters estimated from snapshot sampling. However, most studies on wildlife population health focus on one or only a few parameters, yielding potentially biased conclusions for conservation. Here, we developed a multifaceted index of population health by combining 3 complementary indicators, namely pathological, ecological, and genetic indicators, based on an integrative approach traditionally used to assess ecosystem multifunctionality. We investigated their complementarity and relevance for detecting brown trout (Salmo trutta) risk-prone populations at a large spatial scale, and the underlying environmental stressors. The multifaceted health index properly represented the individual indicators' complementary information. It identified a cluster of moderately risk-prone populations and raised the alarm for one population. Each indicator was individually associated with distinct environmental stressors relevant for brown trout requirements. The multifaceted health index highlighted surrounding agricultural land and oxygen concentration as the most impacting environmental factors for the general health and sustainability of brown trout populations. The implementation of such integrative index can be transferred to a wide range of species and contexts. This index therefore provides to environmental managers and conservationists a snapshot and easily operated tool to identify risk-prone populations and areas to restore or conserve.