The electrocatalytic conversion of carbon dioxide (CO2) into fuels could potentially achieve a sustainable carbon-based economy. The engineering of nanostructured metal electrodes can enhance their activity and selectivity by controlling their local chemical environment; however, direct observation is challenging. In this study, we investigate the molecular-level reaction mechanism of a nanoporous-structured Au electrode for the conversion of CO2 to carbon monoxide (CO) using surface-enhanced infrared absorption spectroscopy (SEIRAS). We designed a well-structured nanoporous Au layer (with a depth distribution of 56.3 nm) on a Si prism using a high-temperature non-aqueous anodization process and characterized the nanoporous Au electrode using atomic force microscopy (AFM) and X-ray absorption spectroscopy (XAS). The in situ SEIRAS results demonstrated that the nanoporous Au electrode has a dominant active site, promoting the linear CO intermediate and suppressing the bridging CO intermediate when compared with the non-structured Au electrode. We also revealed a high local pH at a reaction potential of −0.9 V and the slow diffusion kinetics of local CO32– at an open-circuit potential. These findings provide deeper insights into the electrochemical kinetics and corresponding mechanisms occurring in the electric double layers and highlight the potential for the design of efficient electrocatalysts for CO2 reduction.