Domestic Duck Breeds Research Articles

Chinese Domestic Ducks Evolved from Mallard Duck (Anas platyrhynchos) and Spot-Billed Duck (A. zonorhyncha)

China has a rich genetic resource in its 34 domestic duck breeds. In order to detect the genetic diversity and explore the origin of these indigenous duck populations, the mitochondrial DNA (mtDNA) control region was sequenced and analyzed for 208 individual ducks, including 22 domestic breeds, wild Mallards ducks, Eastern spot-billed ducks, White Muscovy ducks, and Black Muscovy ducks. The haplotype diversity (Hd) was 0.653 and the average nucleotide diversity (Pi) was 0.005, indicating moderate genetic diversity. Sixty haplotypes were detected, and the maximum-likelihood (ML) phylogenetic tree and median-joining (MJ) network were generated from the sequence analyses. In this study, haplotypes from the Mallard duck (Anas platyrhynchos) were detected in most of the Chinese domestic duck breeds. In addition, the Eastern spot-billed duck (A. zonorhyncha) H8 haplotype was detected in two duck breeds. Only two haplotypes were found in Muscovy ducks, suggesting low genetic diversity within this population. The sequence and haplotype analyses revealed that both A. platyrhynchos and A. zonorhyncha contributed to the evolution of domestic ducks in China.

Investigation of a herpesvirus outbreak in mixed breeds of adult domestic ducks using next generation sequencing.

This report characterizes the first lethal outbreak of Marek's disease on a large farm of mixed-breed adult ducks (>18,000) and identifies the pathogen that resulted in high mortality (35%). Clinical signs included inappetence, respiratory distress, depression, muscle weakness, and ataxia. Post mortem revealed enlarged fragile liver mottled with miliary whitish spots and an enlarged spleen. Histopathology revealed hepatocellular necrosis with eosinophilic intra-nuclear inclusion bodies, necrosis of splenic follicles and degeneration/necrosis of renal tubules. The disease was tentatively diagnosed as a herpesvirus infection, confirmed by virus isolation from the liver. DNA was isolated from 15-year-old archival formalin-fixed tissues from infected ducks and subjected to next generation sequencing (NGS). Despite highly degraded DNA, short stretches of G- and C-rich repeats (TTAGGG and TAACCC) were identified as telomeric repeats frequently found in herpesviruses. Megablast and further investigative bioinformatics identified presence of Marek's disease virus (MDV), a Gallid alphaherpesvirus type 2 (GAHV-2), as the cause of the acute fatal infection. The source of infection may be attributed to a dead migratory flamingo found close to the duck enclosures three days prior to the outbreak; hence, GAHV-2 may also be responsible for the fatal infection of the flamingo accentuated by heat stress. Considering the possible spread of this highly contagious and lethal virus from a flamingo to the ducks, and the increasing zoonosis of animal viruses into humans, such as monkey B alphaherpesvirus transmission from macaques to humans with ~80% fatality, this observation has important ramifications for human health and safety of the poultry industry.

Marginal diversity analysis of conservation of Chinese domestic duck breeds

The present study aimed to systematically evaluate the genetic diversity of Chinese domestic duck breeds and ensure the most effective allocation and usage of conservation funds. We first performed an analysis of DNA genetic distance in 21 duck breeds by measuring short tandem repeats. Then, we calculated the extinction probability, contribution rate, and marginal diversity for each breed. The results showed that the extinction rate of the Zhongshan duck, Guangxi duck, and Ji’an duck were the highest at 0.67, 0.59, and 0.59, respectively, and that of the Linwu duck, Jinding duck, and Gaoyou duck were the lowest at 0.15, 0.18, and 0.19, respectively. The current diversity of populations was 7.72 and the expected diversity in five hundred years is 5.14 ± 1.15. The marginal diversity of the Chinese Muscovy duck was the largest (−2.20), accounting for 42.61% of the expected diversity, followed by the Guangxi duck (−0.49, 9.44%), whereas the Jinding duck was the smallest (−0.12; 2.32%). The protection potency of the Chinese Muscovy duck was the largest (0.61), followed by Guangxi duck (0.29), whereas the Jinding duck was the smallest (0.02). This study provides a reference for determining the conservation priority of Chinese domestic duck breeds or genetic resources.

Polymorphic analysis of peptide binding domain of major histocompatibility complex class I in domestic ducks.

Function of duck (Anas platyrhynchos) major histocompatibility complex class I (Anpl-MHC I) molecules in binding peptides is through the peptide binding groove (PBG), which is thought to be influenced by the high polymorphism of α1 and α2 domains. However, little is known about the polymorphism of Anpl-MHC I peptide binding domain (PBD), especially in the domestic duck. Here, we analyzed the polymorphism of forty-eight Anpl-MHC I α1 and α2 domains from domestic duck breeds previously reported. All sequences were analyzed through multiple sequence alignment and a phylogenetic tree was constructed. The coefficient of variance of the peptide binding domains (PBDs) from WS, CV, JD, and SX duck breeds was estimated based on the Wu-Kabat variability index, followed by the location of the highly variable sites (HVSs) on reported crystal structure models. Analysis of α1 and α2 domains showed common features of classical MHC class I and high polymorphism, especially in α1 domain. The constructed phylogenetic tree showed that PBDs of domestic ducks did not segregate based on breeds and had a close phylogenetic relationship, even with wild ducks. In each breed, HVSs were mostly located in the PBG, suggesting that they might determine peptide-binding characteristics and subsequently influence peptide presentation and recognition. The combined results of sequence data and crystal structure provide novel valuable insights into the polymorphism and diversity of Anpl-MHC I PBDs that will facilitate further studies on disease resistance differences between duck breeds and the development of cytotoxic T-lymphocyte (CTL) epitope vaccines suited for preventing diseases in domestic ducks.

Constitutive Heterochromatin Pattern of Five Domestic Duck Breeds, (Aves: Anatidae) in Egypt

Constitutive heterochromatin patterns of five domestic duck breeds three of Anas platyrhynchos (Dumyati, Khample and Pekin) and two of Cairina moschata (Muscovy and Sudani) occurring in Egypt have been described. Results indicated that although the constitutive heterochromatin (C-banding) pattern of three Anas platyrhynchos breeds shared the same distribution of heterochromatin there was an obvious variation in heterochromatin size. In addition, the C-banding patterns of the two Cairina moschata breeds (Muscovy and Sudani) were approximately similar. There wasvariation in size, number and occurrence of C-band blocks on micro-chromosomes between the examined five duck breeds. This may be attributed to the variation of euchromatin content and its correlation with chromosome size and arrangement of constitutive heterochromatin. Furthermore, it may be due to genome mixing through hybridization between related species and/or genera. The present results have shown that discrimination between Anas platyrhynchos (Dumyati, Khample and Pekin) and Cairina moschata (Muscovy and Sudani) duck breeds could be realized via cytogenetical markers such as presence of entirely heterochromatic chromosome pair no.8 in breeds belong Anas platyrhynchos whereas it was euchromatic in breeds of Cairina moschata. In addition to chromosome pair no.8, C-banding pattern of autosome pair no.3 and sex chromosome Z Could discriminate between the duck breeds of Anas platyrhynchos and Cairina moschata. Moreover, the constitutive heterochromatin amounts have significantly varied between the ducks belonging to the two genera. Thus, about only one-third of the micro-chromosomes in the three Anas breeds, exhibited large and visible C-banding blocks in both males and females while up to half of them in the two Cairina breeds. Hence, the duck breeds common in Egypt could be distinguished from others occurring elsewhere by C-banding pattern but this will be confirmed in further biochemical and molecular studies (under publication).

PCK1 expression is correlated with the plasma glucose level in the duck.

Phosphoenolpyruvate carboxykinase 1 (soluble) (PCK1) is a key gene in gluconeogenesis and glyceroneogenesis. Although its functions have been extensively studied in mice, bats and humans, little is known in ducks. Here, PCK1 functions were studied using a duck domestication model and a 48-h fasting experiment. We found PCK1 expression significantly decreased in two breeds of domestic ducks (Jinyun Pockmark ducks and Cherry Valley ducks) as compared with wild ducks (Anas platyrhynchos). Simultaneously, plasma levels of glucose, triglycerides and free fatty acid in domestic ducks were lower than in wild ducks. When compared with fed ducks, the plasma triglyceride level was observed to be significantly decreased, while the glucose and free fatty acid levels remained constant in 48-h fasting ducks. The expression analysis of gluconeogenic genes revealed that fructose-1,6-bisphosphatase genes (FBP1 and FBP2) and the glucose-6-phosphatase gene (G6PC2) were not changed, whereas PCK1 was significantly upregulated. In addition, the reported regulators of PCK1, including forkhead box A2 (FOXA2) gene and orphan nuclear receptor NR4A family genes (NR4A1, NR4A2 and NR4A3), exhibited similar expression levels between 48-h fasting ducks and fed ducks, suggesting that PCK1 is not regulated by these genes in the duck under fasting conditions. In conclusion, PCK1 expression may affect plasma levels of glucose, triglycerides and free fatty acid during the duck domestication process. This work demonstrates for the first time in duck that PCK1 is a key gene in maintaining plasma glucose homeostasis during fasting and that the upregulated expression of PCK1 may be responsible for constant plasma free fatty acid level by the glyceroneogenesis process.

Analysis of the Genetic Diversity and Origin of Some Chinese Domestic Duck Breeds

Twelve fluorescence-labeled microsatellite markers were used to analyze the genetic diversity of 12 domestic duck breeds and 2 wild duck breeds to determine the relationship and origin of Chinese domestic duck breeds. Gene frequency, effective number of alleles (Ne), expected heterozygosity (He), polymorphism information contents (PIC), inbreeding coefficient in population (Fis), standard genetic distance (DS), and genetic distance (DA) were calculated by FSTAT and distance and phylogenetic analysis after the dates which were output from the Microsatellite-Toolkit software. Genetic distances between 12 domestic duck breeds and 2 wild duck breeds were analyzed by variance analysis. Unweighted pair group method with arithmetic mean (UPGMA) and phylogenetic trees used for cluster analysis were structured. The results indicated that 11 loci had medium- or high-level genetic diversity among the 12 loci, which could be efficiently used in the detection of the genetic parameters of each population. The values of He were 0.5414 to 0.7343, those of PIC proved similar, and those of Fis were 0.1101 to 0.3381 among all populations. All breeds were clustered into three groups by UPGMA phylogenetic trees. Banzui duck was clustered into a separate group. Differences of the DA were analysed by t-test. The results showed that difference in DA between the 12 domestic duck breeds and Lvtou duck and the Banzui duck were very significant (P<0.01), indicating that these 12 domestic duck breeds originated from Lvtou wild duck, but not Banzui duck.

Phylogenetic analysis between domestic and wild duck species in Korea using mtDNA d-loop sequences

Recently, the consumption of duck meat has increased; therefore, we need to reveal the origin and gene flow of domestic ducks in Korea. In order to discriminate between duck species, D-loop variations in mitochondrial DNA (mtDNA) have been investigated. In this study, 45 individuals from seven species of wild and domestic ducks in Korea were considered for the D-loop region sequences. With the participation of all the sequences, a phylogenetic neighbor-joining tree was constructed to differentiate between the wild and domestic duck species. In consideration of these sequences, a total 66 haplotypes were obtained (indel included) with an average haplotype of 76.9%, and a haplotype and nucleotide diversity of 0.91 and 0.01, respectively. Also, an estimation of the sequence divergence within and between species was measured in 0.045 and 0.013-0.095, respectively. Meanwhile, the lowest distances of 0.024, 0.013 and 0.018 were observed in three species, including the Mallard, Spot-billed and domestic duck, respectively, which have relatively close genetic relationships. All haplotypes were used for the median-joining network analysis to differentiate all duck species, while three duck species were closely related. Moreover, 26 indel polymorphisms were identified which could be used for the discrimination among the duck species. Based on our results, duck species were effectively discriminated in a D-loop region, which could then be used for an appropriate genetic conservation program for the wild duck and domestic duck breeds in Korea.

The complete mitochondrial genome of the Muscovy duck, Cairina moschata (Anseriformes, Anatidae, Cairina)

Muscovy duck (Cairina moschata) is the most popular meat duck, and it can be crossed with most breeds of domestic ducks in captivity to produce sterile hybrids. In this study, complete mitochondrial genome of the Muscovy duck was sequenced by long and accurate polymerase chain reaction (LA-PCR) as well as the primer walking sequence method. The entire mitochondrial genome of Muscovy duck was 16,610 bp in length, gene composition and arrangement conformed to most bird, which contained the typical structure of 22 tRNAs, 2 rRNAs, 13 protein-coding genes and a non-coding region. The characteristic of the mitochondrial genome was analyzed in detail. Our complete mitochondrial genome sequence will be useful for phylogenetics, and be available as basic data for the breeding and genetics.

Effect of species, breed and route of virus inoculation on the pathogenicity of H5N1 highly pathogenic influenza (HPAI) viruses in domestic ducks

H5N1 highly pathogenic avian influenza (HPAI) viruses continue to be a threat to poultry in many regions of the world. Domestic ducks have been recognized as one of the primary factors in the spread of H5N1 HPAI. In this study we examined the pathogenicity of H5N1 HPAI viruses in different species and breeds of domestic ducks and the effect of route of virus inoculation on the outcome of infection. We determined that the pathogenicity of H5N1 HPAI viruses varies between the two common farmed duck species, with Muscovy ducks (Cairina moschata) presenting more severe disease than various breeds of Anas platyrhynchos var. domestica ducks including Pekin, Mallard-type, Black Runners, Rouen, and Khaki Campbell ducks. We also found that Pekin and Muscovy ducks inoculated with two H5N1 HPAI viruses of different virulence, given by any one of three routes (intranasal, intracloacal, or intraocular), became infected with the viruses. Regardless of the route of inoculation, the outcome of infection was similar for each species but depended on the virulence of the virus used. Muscovy ducks showed more severe clinical signs and higher mortality than the Pekin ducks. In conclusion, domestic ducks are susceptible to H5N1 HPAI virus infection by different routes of exposure, but the presentation of the disease varied by virus strain and duck species. This information helps support the planning and implementation of H5N1 HPAI surveillance and control measures in countries with large domestic duck populations.

Molecular genetic diversity and origin of Chinese domestic duck breeds

Abstract. The 667 bp control region of mitochondrial DNA from 8 representative domestic duck breeds in China, which were all native preserved duck breeds, and a mallard (6 Anas zonorhyncha individuals) were sequenced. The genetic polymorphism and the origin of the 8 domestic ducks were analysed. The result showed that the haplotype diversity (Hd) and average nucleotide diversity (Pi) were 0.67136 and 0.19 %, respectively. Hd and Pi of Youxian Sheldrake were the highest in the 8 domestic duck breeds. Kimura-2 parameter genetic distance between the breeds ranged from 0.00056 to 0.00414. The NJ phylogenetic tree and reduced median-joining network chart were constructed by the total 38 haplotypes and 96 sequences, which included 12 sequences of Anas platyrhynchos from GenBank, 6 sequences of Anas zonorhyncha from GenBank and 78 sequences of this study (72 domestic ducks and 6 Anas zonorhyncha). The maternal origin of the 8 domestic ducks all originated from Anas platyrhynchos.

Genetic diversity and evolution of Fujian domestic duck breeds

Genetic diversity and evolution of Fujian domestic duck breeds

Genetic Diversity and Systematic Evolution of Chinese Domestic Ducks Along the Yangtze-Huai River

To investigate the population structure and systematic evolution of the domestic duck in China, we sequenced the 667 bp mitochondrial DNA (mtDNA) D-loop control region of 106 ducks from nine breeds along the Yangtze-Huai River. Of the total analyzed sites, 34 (5.1%) were polymorphic due to transitions, transversions, insertions, and deletions. Nucleotide content was 25.6% A, 33.3% C, 15.2% G, and 25.9% T. In total, 31 haplotypes were identified in the target region; of these, the major haplotype was A7, and nine haplotypes were shared by the tested ducks. The haplotype diversity (Hd) and average nucleotide diversity (Pi) were 0.798% and 0.28%, respectively. Hd was highest in the Jingjiang shelduck, followed by the Youxian and Enshi shelducks, and it was lowest in the Wendeng black duck. Nucleotide diversity (Dxy) among the nine breeds ranged from 0.139 to 0.433%, and the Kimura 2-parameter distances were 0.0013-0.0044. Molecular variance indicated that a very high proportion of the insignificant genetic variance was attributable to variations within breeds. Phylogenetic analysis of 31 haplotypes revealed only one distinct maternal lineage in the tested ducks, and no evidence was found of a contribution of the Anas zonorhyncha group B haplotype to the maternal origin of Chinese domestic duck breeds along the Yangtze-Huai.

Motor Incoordination, Intracranial Fat Bodies, and Breeding Strategy in Crested Ducks (Anas platyrhynchos f.d.)

Some Crested ducks (CR) are burdened with an intracranial fat body that, depending on the size and location, may lead to varying degrees of motor incoordination. A behavioral test is proposed that helps to identify those CR individuals bearing the problematical fat body. The test consists of putting the ducks on their backs and measuring the time required to right themselves. This was repeated 13 times per animal, and means were calculated. The minimum time required was 0.5 s, and the maximum was 62.6 s. Individuals that show motor incoordination need more time than ducks without such problems (14.3 s in contrast to 1.2 s) and exhibit a larger intracranial fat body. Ducks used for breeding should require no more than approximately 1 to 2 s to right themselves. In an allometric comparison with 3 other domestic duck breeds, CR show a significantly smaller brain; specifically, the cerebellum, tegmentum, apicale hyperpallium, and olfactory bulb are reduced. The relationship between fat body and these structures was discussed.

AFLP analysis of genetic diversity and relationship among some Chinese domestic ducks and wild ducks

The amplified fragment length polymorphic (AFLP) technique was used to analyze the genome DNA polymorphism among 8 breeds of domestic ducks and 2 species of wild ducks. Nine of the 17 selected primers pairs gave reproducible polymorphic DNA amplification bands. The amplified bands ranged from 44 to 83 per primer pair. Of the 513 AFLP markers obtained, 498 were polymorphic. The proportion of polymorphic loci was 97.1%. The genetic distance (D) and similarity coefficients (GS) were calculated based on the polymorphic data. Between domestic ducks D ranged from 0.331 to 0.589, while between domestic ducks and the wild ducks, it ranged from 0.298 to 0.520 (vs. Anas Platyrhynchos) and from 0.316 to 0.522 (vs. A. Poecilorhyncha), respectively. The variance analysis showed no significant difference between the two groups of data, which indicated that both mallard and spot-billed ducks made contributions to domestic duck evolution. A dendrogram was constructed according to the D value.

Brain Alterations in Crested Versus Non-Crested Breeds of Domestic Ducks (Anas platyrhynchos f.d.)

A comparison of brain size and brain composition was made between two uncrested duck breeds and Crested Ducks (CR) and between CR individuals that do possess crests and those that do not have the crest. Domestic ducks of the breed CR have allometrically larger brains than uncrested duck breeds. The crest inserts on a cushion of fat and connective tissue that is partly nourished by brain vessels via small holes in the skull. Through these holes, fat tissue may invade the brain cavity. Because the fat accumulations are sometimes hidden deep between the telencephalon, tectum, and cerebellum, they may be invisible macroscopically and, thus, give the impression of a large brain. The size of the crest, however, is not strictly correlated with fat accumulations in the brain, because 2 among 10 specimens of CR showed no fat body at all, and the investigation of 10 uncrested CR (ducks from the same genetic stock, but without the crests) also revealed fat accumulations in 6 specimens.After subtraction of the volume of the fat body, the brain volume of CR (crested and uncrested) was of equal size to that of “Hochbrutflugenten” and Pommeranian ducks, as was the volumes of most brain structures measured. Significantly smaller in CR were the olfactory bulbs, the prepiriform area, and the cerebellum, which was always situated in close proximity to the fat body in CR.

Gross anatomy of the pancreatic lobes and ducts in six breeds of domestic ducks and six species of wild ducks in China.

A previously unreported pancreatic duct was found by Liu (1989) in Pekin ducks. This duct has now been consistently found in six breeds of domestic ducks and six species of wild ducks in China. For purposes of Nomina Anatomica Avium it is hereby called the 'first pancreatic duct' (Ductus pancreaticus primus) since it enters the duodenum at or near the flexure where the descending duodenum becomes the ascending duodenum. All other pancreatic ducts enter the duodenum later, closer to where it joins the jejunum. This first pancreatic duct drains the caudal extremity of the dorsal lobe of the pancreas and can be easily exteriorized for experimental purposes. Within the parenchyma of the dorsal lobe of the pancreas this duct communicates with the dorsal pancreatic duct. In the present study of the gross anatomy of the pancreatic lobes of domestic and wild Chinese ducks we describe and illustrate variations in position and number of all biliary and pancreatic ducts.

Isolation ofmycoplasma cloacalefrom a number of different avian hosts in great Britain and France

Following the original isolation of Mycoplasma cloacale from a turkey in Great Britain, only one further turkey isolate has been obtained whereas the mycoplasma has been recovered from 2 species of wild ducks in Britain, and from 2 breeds of domestic ducks and from domestic geese in France. A few isolations have also been made from wild and exotic birds but M. cloacale has not been found in chickens.

Control of the Sex Characters in the English Sparrow, Passer domesticus (Linnaeus)

I. The Male. A series of experiments was carried out to determine the nature of the control of the sex characters, particularly plumage, of the English Sparrow. Previous studies have established that the secondary sexual characters, including plumage, of various breeds of domestic fowl, ducks and pheasants are under the influence of the gonads.In the first experiment 52 male birds (35 adult and 17 immature) were castrated. At the time of the operation feathers were plucked from areas showing sexual dimorphism. The regenerated feathers were always of the male type. The capon assumes the normal male plumage and in this respect is similar to domestic fowl.The bill of the adult male during the breeding season is blue-black in color but during late August and early September the bill becomes a light horn color. This light color is retained during the winter but with the approach of the breeding season the bill again takes on the black color. When a male with a black bill is castrated the color changes to a lig...