Bos Taurus Breeds Research Articles

Markers on Bovine Chromosome 20 Associated with Carcass Quality and Composition Traits and Incidence of Contracting Infectious Bovine Keratoconjunctivitis

The objective of this study was to use single nucleotide polymorphisms (SNP) located on bovine chromosome 20 to fine map a previously identified QTL associated with the incidence of infectious bovine keratoconjunctivitis (IBK). Crossbred steers (GPE 7; n = 539) derived from sires of 7 Bos taurus breeds and having veterinary records related to IBK were used to test the association of a total of 105 SNP located under the most relevant region of the QTL. Five SNP were significantly associated with IBK (P < 0.05), as animals inheriting differing genotypes from individual SNP exhibited significantly different incidence rates of IBK. The population also had numerous other phenotypes, supporting evaluation of association of the 105 markers with carcass traits to identify potential antagonistic effects of implementing a marker-assisted selection program for IBK susceptibility. An association of 2 SNP for marbling and tenderness was identified, along with 3 SNP associated with the percentage of carcasses classified as choice. Four SNP were significantly associated with fat yield, 2 SNP with longissimus muscle area, and 2 additional SNP with dressing percentage. The association of these markers indicates that the evaluated QTL region may, in fact, harbor the causative mutations responsible for the variation observed in IBK susceptibility and carcass quality and composition traits. Thus, further evaluation of SNP in this region is necessary in order to identify mutations accounting for the largest degree of variation for IBK and carcass traits.

Study of genetic variation in Yakutian cattle (Bos taurus L.) using the prolactin bPRL, growth hormone bGH, and transcription factor bPit-1 genes

The genetic structure of the Yakutian cattle breed was studied using the following genes: bPRL (RsaI site in exon 3), bGH (AluI site in exon 5), and bPit-1 (HinfI site in exon 6). The values of observed heterozygosity were 0.36 for bPRL, 0.29 for bGH, and 0.16 for bPit-1. These values are within the range of values for this parameter established for a number of Bos taurus breeds. The results obtained show that genetic variation is preserved in this aboriginal Russian breed, despite a catastrophic reduction of the number of animals.

Evaluation of physiological and blood serum differences in heat-tolerant (Romosinuano) and heat-susceptible (Angus) Bos taurus cattle during controlled heat challenge1

A study was performed to evaluate differences in thermoregulatory ability of 2 Bos taurus breeds with known differences in heat tolerance. Nine Angus (AG; 304 +/- 7 kg of BW) and 9 Romosinuano (RO; 285 +/- 7.5 kg of BW) steers were transported to the Brody Environmental Center at the University of Missouri. Steers were housed for 18 d at thermoneutrality (TN; 21 degrees C) before initiation of heat stress (HS), which consisted of daily cyclic air temperature (26 degrees C, night; 36 degrees C, day) for 14 d. Rectal temperature and respiration rate were measured 6 times daily throughout the study. Sweat rates at shaved skin sites were recorded on specific days. Blood samples were taken once per week. Angus steers maintained rectal temperature 0.5 degrees C greater than RO at TN (P < 0.001). Likewise, respiration and sweat rates were greater (P < 0.001) in AG than RO at TN (P < 0.05). Rectal temperature increased during HS for both breeds with AG maintaining greater temperatures (P < 0.001). Both breeds increased respiration rate during HS, with AG steers exhibiting the greater rate (P < 0.001). Sweat rate increased more than 4-fold during HS (P < 0.001), followed by reduction after 7 d. Even after HS acclimation, AG exhibited the greater sweat rate (P < 0.001). Breed differences for serum leptin, creatinine, and cholesterol were found throughout the study with AG being greater than RO. Although there were no breed differences (P = 0.21) at TN, only AG steers exhibited a HS-induced increase (P < 0.05) in prolactin, creatinine, and cholesterol concentrations to suggest that an increase in rectal temperature is required for this effect. Use of rectal temperature along with endocrine markers, such as prolactin, may aid in the identification of B. taurus sensitivity to heat.

Survival of the thriftiest: restricted nurture reveals the thrifty nature of a growth gene in Bos indicus

Growth hormone (GH) is a part of the somatotropic axis that controls metabolism, growth, development and aging in a wide range of animals. Mutations that reduce GH signaling have been associated with extended life spans and increased longevity in ways similar to what is observed in dietary restriction (DR) models. However, the mechanism by which DR works is not well understood. Here, we show that DR works as a factor in the evolution of the genetic make-up of domestic cattle. In a series of 6864 bovines of seven Bos indicus and tropically adapted Bos taurus breeds, the frequency of a short, wild-type allele of the promoter region of the bovine GH gene, G1 allele, varied from 2.7 to 17.7%. The frequency of the long, domestic G2 allele increased from 88 to 95% along 20 calf crops of commercial Bos indicus cattle of the Nelore breed undergoing selection for increasing post-weaning weight gain with ad libitum nutrient intake. Under DR, however, the G1 allele sustained growth better than the G2 allele, as observed in a series of feeding tests. The G2 allele was even detrimental or abiotropic, as it caused rapid body decay under DR. We observed a reflection symmetry of GH allele substitution effects on body weight under different dietary schemes. The G2 allele is featured as the "demanding allele", because it is optimally fitted to ad libitum nutrient intake. The G1 allele is featured as the "thrifty allele" because it is optimally fitted to DR. Our results show that dietary regimens need not extend lifespan or increase longevity in the sense of age-specific fitness. Instead, adaptation to any particular dietary regimen is just as much a consequence of selection as its cause; dietary regimens work as do any selection force, optimizing genotypic fitness to nutritional conditions.

Frequency of aneuploidy in in vitro–matured MII oocytes and corresponding first polar bodies in two dairy cattle ( Bos taurus) breeds as determined by dual-color fluorescent in situ hybridization

The current study was undertaken to investigate the aneuploidy rates in in vitro–matured meiosis II (MII) oocytes and corresponding first polar bodies in two dairy cattle ( Bos taurus) breeds by using dual-color fluorescent in situ hybridization (FISH). A total of 159 and 144 in vitro–matured MII oocytes of the Italian Friesian and Italian Brown breeds, respectively, were obtained according to the standard methods and analyzed by FISH using “Xcen” and “5” chromosome-specific painting probes, produced by chromosome microdissection and Degenerate Oligonucleotide Primer- Polymerase Chain Reaction (DOP-PCR). Oocytes with unreduced chromosome number were 10.1% and 16.7% in the two breeds, respectively. To avoid bias due to possible artifacts, the aneuploidy rates were determined by analyzing only oocytes with the corresponding polar bodies. In the Italian Friesian, 100 of 143 (69.9%) secondary MII oocytes showed clear MII plates with corresponding first polar bodies and were scored for aneuploidy detection; one oocyte was “nullisomic” for chromosome X (1.0%) and one “disomic” for chromosome 5 (1.0%). In the Italian Brown, 100 of 120 (83.3%) MII oocytes with corresponding first polar bodies were analyzed; one oocyte was nullisomic (1.0%) and one was disomic (1.0%), both for chromosome 5. Totally, 303 oocytes were analyzed, 40 of which showed an unreduced chromosome complement (13.2%); of 200 MII oocytes with the corresponding first polar bodies, the aneuploidy rate (nullisomy + disomy) for the two chromosomes scored was 2%. Assuming that each chromosome is equally involved in aneuploidy, it results that in cattle oocytes matured in vitro, at least 30% of the oocytes (1 × 30 haploid chromosomes) should be aneuploid. Premature separation of sister chromatids (PSSC) was also observed in 2% of the oocytes in the Italian Friesian breed involving chromosome 5 and in 1% of the Italian Brown breed involving the X chromosome. Estimation of the “baseline” level of aneuploidy in the in vitro–matured oocytes of the various domestic animal species and breeds is, to our opinion, a useful reference for improving the in vitro production of embryos as well as for monitoring future trends of the reproductive health of the species/breeds engaged in zootechnical productions, especially in relation to management errors and environmental hazards.

296 EFFECT OF GROWTH HORMONE ON EMBRYO DEVELOPMENT AND ULTRASTRUCTURE OF BOS TAURUS IVP BOVINE EMBRYOS

Bovine in vitro production systems are one of the most used assisted reproductive technique. However, this technique has some limitations especially in Bos taurus breeds, because of the low percentage of viable blastocysts produced (around 40% of oocytes inseminated) and higher cryosensitivity due to higher lipid content. Growth hormone (GH) can be a promising additive to increase in vitro embryo production. The aim of this study was to evaluate the embryo developmental rates (blastocyst/oocytes cleaved and blastocyst/oocytes inseminated) and ultrastructural features in Bos taurus embryos produced in SOFaa medium with or without GH. Cumulus oocyte complexes (COC) were recovered from slaughterhouse-derived ovaries (Angus Red crosses) and by ovum pick-up (OPU) from Jersey donors. After IVM and IVF, the presumptive zygotes were allocated in the SOFaa medium without (control) or with addition of GH (100 ng mL-1), for culture at 39°C in an atmosphere of 5% CO2. The cleavage and viable blastocyst rates were recorded 2 and 8 days after initiation of IVF, respectively. The results were compared by chi-square analysis. Similar (P &gt; 0.05) cleavage rates were found in different culture medium and bovine breeds (61 v. 63% for Jersey control and Jersey GH; 71 v. 72% for cross-breed control and cross-breed GH). The development rates (blastocyst/oocytes cleaved and blastocyst/oocytes inseminated) did not differ in culture medium with or without GH within breeds (35 v. 30% for Jersey control and GH; 52 v. 56% for cross-breed control and GH; 21 v. 20% for Jersey control and GH; 36 v. 41% for cross-breed control and GH, respectively; P &gt; 0.05). However, when breeds were compared, higher development rates were observed in cross-breed obtained from slaughterhouses than Jersey donors obtained by OPU (35 v. 52% for Jersey v. cross breed control; 30 v. 56% for Jersey v. cross-breed GH; 21 v. 36% for Jersey v. cross-breed control; 20 v. 41% for Jersey v. cross-breed GH. P &lt; 0.001). The analyses of ultrastructure demonstrated no difference in the lipid proportion and organelle distribution of embryos produced with or without GH. We concluded that GH addition to SOFaa medium did not increase developmental rates for cross-breed or Jersey IVP embryos.

402 SUPEROVULATION OF TROPICAL-ADAPTED BOS TAURUS AND BOS INDICUS COWS IN A TROPICAL ENVIRONMENT

Breed differences in ovarian function were found among beef Bos indicus and Bos taurus cows maintained in a subtropical environment (Alvarez P et al. 2000 J. Anim. Sci. 78, 1291-1302). The aim of this study was to compare ovarian response to superovulation and embryo production of tropical-adapted Bos taurus and Bos indicus cows. The experiment was carried out in a tropical wet climate at the experimental station of Instituto de Zootecnia (latitude 22°46′S, longitude 47°17′W) from November to February (average maximum temperature = 30.0 ± 0.8°C and average absolute precipitation = 153.1 ± 78.8 mm3). Forty Caracu (a local Bos taurus breed) and 50 Nelore (Bos indicus breed) lactating cows were treated with an intravaginal device containing progesterone (1.38 mg; CIDR-B®, Pfizer Animal Health, Montreal, Québec, Canada) and 2.5 mg i.m. of estradiol benzoate (Estrogin®, Farmavet, São Paulo, Brazil). Four days later, the animals were superovulated with multiple i.m. injections of 400 IU of FSH (Pluset®, Calier, Spain) in decreasing doses (75-75, 75-50, 50-25, and 25-25 IU) at 12-h intervals over 4 days. The CIDR-B® device was removed 3 days after the first superovulatory injection and cows received i.m. 150 μg of cloprostenol (Veteglan®, Calier, Spain). Cows were inseminated 48 and 62 h after the cloprostenol injection and embryos were recovered nonsurgically 7 days after insemination. Differences in the number of CL (assessed by ultrasound scanning), total number of ova/embryos, and number of transferable embryos were analyzed by ANOVA. Differences in the number of animals with low response (&lt;3 CL) to superovulation were analyzed by chi-square test. All donors (with the exception of 1 Caracu and 2 Nelore) with ovarian response &gt;3 CL showed estrus at insemination. Three (8.9%) Caracu and 5 (10.0%) Nelore cows had &lt;3 CL following the superovulation treatment (P = 0.68). There was no difference (P &gt; 0.05) in the mean (± SEM) CL counts of Caracu (11.4 ± 3.3) and Nelore (12.0 ± 4.1) cows. Similarly, there were no differences (P &gt; 0.05) between Caracu and Nelore cows for total number of ova/embryos collected (8.6 ± 2.6 v. 9.0 ± 4.3) or transferable embryos (6.0 ± 2.4 v. 5.1 ± 2.9). In conclusion, the superovulation of Caracu and Nelore cows carried out in a tropical climate resulted in similar ovarian responses and embryo production. Supported by FAPESP.

X-Y Sperm Aneuploidy in 2 Cattle (Bos taurus) Breeds as Determined by Dual Color Fluorescent in situ Hybridization (FISH)

The present study was undertaken to investigate aneuploidy rates in the sperm populations of 2 cattle (Bos taurus) breeds by using dual color fluorescent in situ hybridization (FISH) with Xcen and Y chromosome-specific painting probes, obtained by chromosome microdissection and DOP-PCR. Frozen semen from 10 Italian Friesian and 10 Italian Brown testing bulls was used for the investigation. For each bull, more than 5,000 sperm were analyzed, for a total of 52,586 and 51,342 sperm cells for the 2 breeds, respectively. The present study revealed – in both breeds – a preponderance of the Y-bearing sperm compared to the X-bearing sperm. Within each breed, a statistically significant variation in the various classes of aneuploidy (XX, YY and XY) was found: differences were found in the Friesian breed among the 3 diploidy classes, and in the Brown breed, among the 3 disomy classes (p < 0.05) as well as among the 3 diploidy classes (p < 0.01). However, the 2 breeds did not differ significantly in the overall mean rates of X-Y aneuploidy (disomy + diploidy) which amounts to 0.162% in the Italian Friesian and 0.142% in the Italian Brown. When meiosis I (MI) and II (MII) errors were compared, statistically significant differences (p < 0.01) were found in the disomy classes and in both breeds, whereas the differences between diploidy classes were not significant. Compared to humans, a lower level of aneuploidy has been found in the domestic species analyzed so far. The present study contributes to the establishment of a baseline level of aneuploidy in the sperm populations of 2 cattle breeds which could be used for monitoring future trends of reproductive health, especially in relation to environmental changes and mutagens.

Effect of bovine respiratory disease and overall pathogenic disease incidence on carcass traits1,2

The objective this study was to evaluate the effects of incidence of bovine respiratory disease (BRD) and overall incidence of pathogenic diseases (IPD) on carcass traits. Two independent populations were used. The first population included crossbred steers (GPE7; n = 642) derived from sires of 7 Bos taurus breeds: Angus, Charolais, Gelbvieh, Hereford, Limousin, Red Angus, and Simmental. The second population included crossbred steers (GPE8; n = 621) derived from tropically adapted Bos taurus breeds and Bos indicus-influenced breeds: Beefmaster, Brangus, Bonsmara, and Romosinuano, as well as Hereford and Angus. Treatment records for BRD, infectious keratoconjunctivitis, and infectious pododermatitis were available for these populations. Incidence of BRD was treated as an independent effect. Incidences of the 3 microbial pathogenic diseases were pooled into a single trait to represent overall pathogenic disease incidence. Traits evaluated were HCW; KPH; LM area; marbling score; fat thickness; dressing percentage; yield grade; retail, fat, and bone yields; and meat tenderness. Both BRD and IPD were associated with differences in yield grade in GPE7 and GPE8 steers. Animals treated for BRD had decreased yield grades (P = 0.003 and P = 0.02, in GPE7 and GPE8, respectively) compared with untreated animals. Animals treated for IPD had decreased yield grades (P = 0.0006 and P = 0.004, in GPE7 and GPE8, respectively) compared with untreated animals. Incidence of BRD and IPD were associated with a reduction in fat thickness in GPE7 and GPE8 steers. Animals treated for BRD had reduced adjusted fat measurements (P = 0.0007 and P = 0.01, in GPE7 and GPE8) compared with untreated animals. Animals treated for IPD also had reduced adjusted fat measurements (P = 0.0003 and P = 0.002, in GPE7 and GPE8) compared with untreated animals. Animals treated for BRD (P < 0.007) or IPD (P < 0.02) in the GPE7 population also had decreased estimated KPH measurements compared with unaffected animals. Animals affected with BRD in GPE8 had greater (P < 0.05) shear force measurements than unaffected animals. Animals affected with IPD in GPE8 had greater HCW (P < 0.03) and fat yield (P < 0.01) measurements but lesser bone yield (P < 0.03) and retail product yield (P < 0.01) measurements than unaffected animals. The relationship between disease and carcass traits should be given consideration by future studies that aim to develop selection strategies based on specific traits.

Tick-susceptible Bos taurus cattle display an increased cellular response at the site of larval Rhipicephalus (Boophilus) microplus attachment, compared with tick-resistant Bos indicus cattle

Cattle demonstrate divergent and heritable phenotypes of resistance and susceptibility to infestation with the cattle tick Rhipicephalus (Boophilus) microplus. Bos indicus cattle are generally more resistant to tick infestation than Bos taurus breeds although large variations in resistance can occur within subspecies and within breed. Increased tick resistance has been previously associated with an intense hypersensitivity response in B. taurus breeds; however, the mechanism by which highly resistant B. indicus cattle acquire and sustain high levels of tick resistance remains to be elucidated. Using the commercially available Affymetrix microarray gene expression platform, together with histological examination of the larval attachment site, this study aimed to describe those processes responsible for high levels of tick resistance in Brahman (B. indicus) cattle that differ from those in low-resistance Holstein-Friesian (B. taurus) cattle. We found that genes involved in inflammatory processes and immune responsiveness to infestation by ticks, although up-regulated in tick-infested Holstein-Friesian cattle, were not up-regulated in Brahman cattle. In contrast, genes encoding constituents of the extracellular matrix were up-regulated in Brahmans. Furthermore, the susceptible Holstein-Friesian animals displayed a much greater cellular inflammatory response at the site of larval R. microplus attachment compared with the tick-resistant Brahman cattle.

Genome variability in European and American bison detected using the BovineSNP50 BeadChip

The remaining wild populations of bison have all been through severe bottlenecks. The genomic consequences of these bottlenecks present an interesting area to study. Using a very large panel of SNPs developed in Bos taurus we have carried out a genome-wide screening on the European bison (Bison bonasus; EB) and on two subspecies of American bison: the plains bison (B. bison bison; PB) and the wood bison (B. bison athabascae; WB). One hundred bison samples were genotyped for 52,978 SNPs along with seven breeds of domestic bovine Bos taurus. Only 2,209 of the SNPs were polymorphic in the bison when EB, PB and WB were pooled and only 929 SNPs were polymorphic in EB. Larger numbers of polymorphic SNPs were found in PB (1,403 SNPs) and WB (1,524 SNPs). Also the expected heterozygosity was lower in EB (HE = 0.135) than in WB (HE = 0.197) and PB (HE = 0.199). The polymorphic SNPs were not randomly distributed in the bison, but were aggregated and separated from each other by regions with low haplotype diversity (haplotype blocks). Based on our results we suggest that the utilization of genome-wide screening technologies holds large potential to radically change the breeding practices in captive or managed populations of threatened populations and advocate for developing marker assisted selected strategies in such populations.

Characterization and genetic analysis of bovine αs1‐casein I variant

The aim of this study was to identify the molecular genetic origin underlying the I variant of alpha(s1)-casein and to develop a DNA-based test for this polymorphism as a tool for genetic analyses independent of milk sample testing. All coding exons and flanking regions of the alpha(s1)-casein gene were sequenced in DNA samples from cattle of known alpha(s1)-casein genotypes (BI, CI, II, CC), determined by isoelectric focusing of milk samples. A nucleotide substitution (A>T) in exon 11 (g.19836A>T) leads to the exchange of Glu with Asp at amino acid position 84 of the mature protein (p.Glu84Asp) and perfectly co-segregated with the presence of the alpha(s1)-casein I variant in the milk of the analysed animals. Genotyping of a total of 680 DNA samples from 31 Bos taurus and Bos indicus cattle breeds and from Bos grunniens, Bison bison and Bison bonasus by restriction fragment length polymorphism analysis revealed the occurrence of Asp at position 84 at low frequencies in Bos taurus and Bos indicus breeds and established its origin from the alpha(s1)-casein C variant (p.Glu192Gly). Ten different intragenic haplotypes in the gene region from intron 8 to intron 12 were observed by sequencing, of which two occurred in Bison bison and one in Bison bonasus only. Using available casein gene complex information, an association of Asp at position 84 to beta-casein A(2) and kappa-casein B was shown in the Bos indicus breed Banyo Gudali. Taken together, we can postulate that the alpha(s1)-casein variant I is caused by a non-synonymous nucleotide substitution in exon 11 of the gene and that it originated within Bos indicus and spread to Bos taurus subsequently.

A novel polymorphism of GDF5 gene and its association with body measurement traits in Bos taurus and Bos indicus breeds

Body measurement traits, influenced by genes and environmental factors, play numerous important roles in the value assessment of productivity and economy. Growth differentiate factor 5 (GDF5), involved in the development and maintenance of bone and cartilage, is an important candidate gene for body measurement traits selection through marker-assisted selection (MAS). In this study, based on the PCR-RFLP technology, we discovered and evaluated the potential association of the single nucleotide polymorphism (SNP) (T586C in exon 1) of the bovine GDF5 gene with body measurement traits in 985 Bos taurus breed, 42 Bos indicus breed and 76 Bos indicus x Bos taurus individuals. As the SNP marker, there were the significant effects on the Body length (BL) in the Bos taurus (BT) and Bos indicus x Bos taurus (BMY) populations (P < 0.05). In BT population, animals with the genotype TT had lower mean values for BL and Hip width (HW) than these with the TC and CC genotype (P < 0.01). In BMY population, animals with the genotype TC had lower mean values for BL than these with the genotype CC (P < 0.05). These results suggest that the SNP of the GDF5 gene could be a very useful genetic marker for body measurement traits in the bovine reproduction and breeding.

Prevalence of abortion and stillbirth in a beef cattle system in Southeastern Mexico

Prenatal mortality is an important cause of production losses in the livestock industry. This study estimates the prevalences of abortion and stillbirth in a beef cattle system and determines the significance of some risk factors, in the tropics of Mexico. Data were obtained from a Zebu cattle herd and their crosses with Bos taurus breeds, in Yucatan, Mexico. The logit of the probability of an abortion or stillbirth was modeled using binary logistic regression. The risk factors tested were: year of abortion (or calving), season of abortion (or calving), parity number and dam breed group. The effect of twins on stillbirth was tested using Fisher exact test. Of the 4175 calvings studied 49 were abortions (1.17%). Significant factors in the logistic regression analysis for abortions were season of abortion and parity number. The risk of abortion was lower in the dry seasons compared to the rainy and windy seasons (P = 0.009). The risk of abortion was higher in second parity cows followed by the third and first parity cows, as compared to older cows (P = 0.015). Of the 4126 births, 87 were stillbirths (2.11%). Significant factors in the logistic regression analysis for stillbirth were year of calving (P = 0.0001) and parity number (P < 0.001). The risk of stillbirth in first parity cows was 2.6 times that of old cows. Of the total births, 15 were twins (0.36%) of which 7 were born dead calves. Herd owners must focus on the significant risk factors under their control to reduce the prevalence of prenatal mortality.

High-resolution haplotype block structure in the cattle genome

BackgroundThe Bovine HapMap Consortium has generated assay panels to genotype ~30,000 single nucleotide polymorphisms (SNPs) from 501 animals sampled from 19 worldwide taurine and indicine breeds, plus two outgroup species (Anoa and Water Buffalo). Within the larger set of SNPs we targeted 101 high density regions spanning up to 7.6 Mb with an average density of approximately one SNP per 4 kb, and characterized the linkage disequilibrium (LD) and haplotype block structure within individual breeds and groups of breeds in relation to their geographic origin and use.ResultsFrom the 101 targeted high-density regions on bovine chromosomes 6, 14, and 25, between 57 and 95% of the SNPs were informative in the individual breeds. The regions of high LD extend up to ~100 kb and the size of haplotype blocks ranges between 30 bases and 75 kb (10.3 kb average). On the scale from 1–100 kb the extent of LD and haplotype block structure in cattle has high similarity to humans. The estimation of effective population sizes over the previous 10,000 generations conforms to two main events in cattle history: the initiation of cattle domestication (~12,000 years ago), and the intensification of population isolation and current population bottleneck that breeds have experienced worldwide within the last ~700 years. Haplotype block density correlation, block boundary discordances, and haplotype sharing analyses were consistent in revealing unexpected similarities between some beef and dairy breeds, making them non-differentiable. Clustering techniques permitted grouping of breeds into different clades given their similarities and dissimilarities in genetic structure.ConclusionThis work presents the first high-resolution analysis of haplotype block structure in worldwide cattle samples. Several novel results were obtained. First, cattle and human share a high similarity in LD and haplotype block structure on the scale of 1–100 kb. Second, unexpected similarities in haplotype block structure between dairy and beef breeds make them non-differentiable. Finally, our findings suggest that ~30,000 uniformly distributed SNPs would be necessary to construct a complete genome LD map in Bos taurus breeds, and ~580,000 SNPs would be necessary to characterize the haplotype block structure across the complete cattle genome.

Breed differences in calving interval in the humid Mexican tropic

The objective of this study was to evaluate the influence of breed, breed and sex of the calf, farm, calving number (CN), type of calving, and their interactions on CI using records from four different beef breeds performing in the humid tropical environment of Mexico. The influence of these factors on CN was also evaluated. CI and CN varied with farm, breed of the dam, and with breed of the dam by calf breed interaction (P<0.001), while CI also varied with CN. Significant differences between Bos indicus and Bos taurus breeds for CI (432 vs. 488 days) and for CN (2.13 vs. 1.92) were observed (P<0.001). The interaction effects observed between breed of the dam by breed of the calf on CI and on CN were due to a favorable F(1) calf effect on CI observed only in Angus cows, although with an apparent unexpected negative impact on CN.

Distribution of BoLA-DRB3 allelic frequencies and identification of a new allele in the Iranian cattle breed Sistani (Bos indicus)

The distribution of the frequencies of BoLA-DRB3 gene alleles in the Iranian cattle breed Sistani was studied by the PCR-RFLP ("hemi-nested") assay using restriction endonucleases RsaI, HaeIII and BstYI. In the examined cattle breed (65 animals) 32 alleles have been identified one of which being described for the first time (6.15% frequency). The nucleotide sequence of the polymorphic region of exon 2 of this allele has been determined and submitted in the GeneBank database under accession number DQ486519. The submitted sequence has maximum homology (92%) with the previously described sequence DRB3-mRNA from Bos indicus (AccN X79346) and differs from it by 24 nucleotide substitutions which result in 16 amino acid substitutions. The peptide (on the basis of the reconstructed amino acid sequence) has 89% identity to the sequence encoded by the BIDRBF 188 locus (Bos indicus). The results obtained permit the sequence described by us to be considered as a new allele of the BoLA-DRB3 gene (DRB3.2**X). The total frequency of the main six alleles (DRB3.2*X, *10, *11, *20, *34 and *X) occurring with a frequency of over 5% is about 60% in Iranian Sistani cattle. Fifteen alleles have <1% frequency. The highest frequency was observed for DRB3.2*8 allele (21.54%) like in other previously described breeds of Bos indicus (up to 23.07%). The Iranian breed Sistani has a high level of similarity by the spectrum of BoLA-DRB3 alleles and their frequencies to other Bos indicus breeds and significantly differs by these criteria from the Bos taurus breeds. The Iranian Sistani herd under study includes alleles associated with to resistance to leukemia (DRB3.2*ll and *23) and to different forms of mastitis (DRB3.2*2, *7, *11, *23 and *24) although their frequencies are low (from 0.77 to 5.37%). On the whole, a high level of diversity of BoLA-DRB3 gene alleles and the availability of alleles associated with resistance to different diseases makes this breed of interest for breeding practice.

PCR-RFLP Genotyping of Whole Romanian Grey Steppe Cattle Population for ?S1 Casein IRV Allele

The genetic polymorphisms of major milk proteins were studied relative to milk quality and its manufacturing properties (Delacroix-Buchet et al., 1994) or as Zebu introgression markers in Bos taurus breeds (Ibeagha-Awemu et al., 2007), either to study cattle phylogenetic relationships (Balteanu et al., 2008). In our preavious work we identified and confirmed the hypothesis of the existence of this new additional αS1-CN genetic variant in Romanian Grey Steppe cattle (Balteanu et al., 2008, GenBank accession number EU908730).In order to study the frequency of this new allele in this breed, blood samples were collected from the entire known existing population, consisting of 63 individuals of different ages: 57 from the S.C.D.C.B. Dancu, Iasi County, and 6 from the U.S.A.M.V. ClujNapoca, Cluj County). Six straws with conserved semen, belonging to the bulls used in the nationalconservation program of this breed, were also recovered from S.C.D.C.B. Dancu. The whole population genotyping, done based on the PCR-RFLP test developed in our previous work (Balteanu et al., 2008), revealed that 4 deceased bulls and 13 living females of different ages carry this αS1-CN IRV new allele, making the calculated frequency of this allele 0.123. This frequency is relatively high for a new genetic variant. Of course some could attribute this to a low number of individuals left, which possibly caused inbreeding. This theory can be easily refuted by the fact that the conserved semen (from the 1980’s) belonging to 4 unrelated bulls carries this new variant. This suggests that IRV variant had an even higher frequency at the time when this breed and its progenitors were the only ones existing in Romania. However,the declining number of individuals has also likely allowed this breed to remain relatively isolated from introgression of other alleles from other breeds.

Brahman and Brahman crossbred cattle grown on pasture and in feedlots in subtropical and temperate Australia. 1. Carcass quality

Brahmans are known to have poorer carcass quality relative to Bos taurus breeds and crossbreds under temperate environments; however, little is known of their performance in subtropical environments. The Cooperative Research Centre for Cattle and Beef Industry (Meat Quality) initiated a crossbred progeny test experiment to compare straightbred Brahmans with Brahman crossbreds finished on pasture and grain, in subtropical and temperate environments, to carcass quality specifications of Australian domestic and export markets. Brahman, Belmont Red, Santa Gertrudis, Angus, Hereford, Shorthorn, Charolais and Limousin sires were mated to Brahman females in subtropical Queensland over 3 years to produce 1750 progeny. At a common age at slaughter, Charolais crossbreds had the highest hot carcass weight (CWT) but were not significantly heavier than Limousin or British crossbred progeny. At common carcass weights, breeds within breed type (British, Continental, tropically adapted) performed similarly. British and Santa Gertrudis crossbreds had the fattest carcasses and lowest yields. British and Belmont Red crossbreds had the highest intramuscular fat percentage (IMF). Continental crossbreds had the highest retail beef yield (RBY), kilograms of retail primals (RTPM) and percent retail primals (pcRTPM) and leanest carcasses. Brahmans had the lowest CWT, intermediate subcutaneous fat cover, high yields and low IMF. Animals finished in the subtropics on pasture were significantly older, leaner and had higher RBY, RTPM and pcRTPM than subtropical feedlot-finished contemporaries. Temperate feedlot animals had significantly more IMF, less subcutaneous fat at the P8 site and slightly lower yields than subtropical feedlot contemporaries, indicating possible effects of postweaning growth path on fat distribution. Belmont Red crossbreds demonstrated the advantages of adaptation with the highest IMF in both subtropical finishing regimes, while Angus progeny had the highest IMF in the temperate feedlot environment and highest IMF overall when analysed across finishing regimes. Significant interactions were mainly the result of scale effects rather than breed re-ranking for carcass traits across markets and finishing regimes. Therefore, breeds that performed well for certain carcass traits in subtropical environments performed consistently for those traits in temperate environments relative to other sire breeds, regardless of market endpoint or finishing nutrition.

Linkage disequilibrium and signatures of selection on chromosomes 19 and 29 in beef and dairy cattle

The objective of this study was to quantify the extent of linkage disequilibrium (LD) on bovine chromosomes 19 and 29 and to study the pattern of selection signatures in beef and dairy breeds (Angus and Holstein) of Bos taurus. The extent of LD was estimated for 370 and 186 single nucleotide polymorphism markers on BTA19 and 29 respectively using the square of the correlation coefficient (r2) among alleles at pairs of loci. A comparison of the extent of LD found that the decline of LD followed a similar pattern in both breeds. We observed long-range LD and found that LD dissipates to background levels at a locus separation of about 20 Mb on both chromosomes. Along each chromosome, patterns of LD were variable in both breeds. We find that a minimum of 30 000 informative and evenly spaced markers would be required for whole-genome association studies in cattle. In addition, we have identified chromosomal regions that show some evidence of selection for economically important traits in Angus and Holstein cattle. The results of this study are of importance for the design and application of association studies.