Mating System Research Articles

Bat mating systems-A review and recategorisation.

Mating systems, influenced by the social and ecological environment and individual attributes, are fundamental components of animal social organisation, impacting behaviour, animal distribution, ecosystem processes, individual reproductive success, and population dynamics. Bats are of particular interest for studies of mating systems as they are thought to exhibit a greater diversity in mating systems than any other mammalian order, and thus make great models for improving our fundamental understanding of causes and consequences of social organisation. Here, we review the current knowledge of bat mating systems. Our analyses show that research on bat mating systems has not kept pace with research on bats in general and that traditional typologies do not accommodate the mating system of several species. Therefore, we propose an alternative, functional framework to categorise mating systems of bats and by extension of other taxa. We argue that mating systems can be classified according to a male reproductive skew continuum, with an increasing skew from monogamy to true lekking. We include an additional category of lek-like mating system along the continuum to account for previous trans-categorical cases that have the appearance of resource defence but are functionally akin to a lek. The new framework has a total of seven categories: promiscuity, monogamy, female defence polygyny, resource defence polygyny, a lek-like mating system, exploded classical lek, and clustered classical lek. Applying this framework to bats reveals that lek mating systems are more prevalent in bats than previously recognised. It is our aim that this review and the proposed framework provide a greater understanding of bat mating systems particularly and provoke research into the factors that shape mating systems across animal taxa more generally.

Population genetic structure in a self-compatible hermaphroditic snail is driven by drift independently of its contemporary mating system.

Genetic drift, gene flow, and natural selection commonly influence population genetic diversity. In populations of self-compatible hermaphrodites, the mating system (e.g., self-fertilization) further reduces individual heterozygosity. Furthermore, selfing, as a form of inbreeding, significantly impacts genetic drift by reducing effective population size (N e). This can potentially accelerate genetic drift, particularly in small populations where self-fertilization is likely during founder events. To investigate the roles of genetic drift and contemporary mating system in populations of the freshwater snail Lymnaea stagnalis, we examined their effective population sizes (N e) and Tajima's D values, which reflect genetic drift over extended time periods, as well as estimates of within-population selfing rates and pairwise relatedness reflecting contemporary mating system. We used 4054 SNP markers obtained using restriction site associated DNA (RAD) sequencing from individuals in five snail populations originating from geographically closely located ponds. We found strong population genetic structure and differences in genetic diversity among populations. Covariation between genetic diversity and N e estimates and Tajima's D values suggested drift being an important determinant of genetic diversity and structure in these populations. However, this effect was independent of the contemporary mating system, as indicated by the similarity of selfing rates and relatedness estimates among populations. Thus, founder events (possibly including historical inbreeding) and/or drift due to small sizes of L. stagnalis populations are likely to explain their genetic structure and limit within-population genetic diversity.

Inbreeding avoidance, competition and natal dispersal in a pair-living, genetically monogamous mammal, Azara's owl monkey (Aotus azarae).

Natal dispersal is an important life-history stage influencing individual fitness, social dynamics of groups and population structure. Understanding factors influencing dispersal is essential for evaluating explanations for the evolution and maintenance of social organization, including parental care and mating systems. The social and mating systems of Azara's owl monkeys (Aotus azarae) are infrequent among mammals; these primates are pair-living, serially and genetically monogamous and both sexes directly care for offspring. To evaluate the role that competition and inbreeding avoidance play in shaping dispersal patterns, we used 25 years of demographic and genetic data to examine how variation in timing of natal dispersal is related to social (adult replacements, step-parents, births and group size) and ecological factors (seasonal abundance of resources) in a wild population of A. azarae in Formosa, Argentina. We found that all males and females dispersed from their natal groups, but subadults delayed dispersal when a step-parent of the opposite sex joined the group, indicating that they may perceive these step-parents as potential mates. Dispersal was more probable when resource conditions were better, regardless of age. Overall, agonistic conflict over food and potential mates with adults in the natal group, as well as inbreeding avoidance, contribute to regulating dispersal.

A pheromone receptor in cichlid fish mediates attraction to females but inhibits male parental care

Reproductive behaviors differ across species, but the mechanisms that control variation in mating and parental care systems remain unclear. In many animal species, pheromones guide mating and parental care. However, it is not well understood how vertebrate pheromone signaling evolution can lead to new reproductive behavior strategies. In fishes, prostaglandin F2α (PGF2α) drives mating and reproductive pheromone signaling in fertile females, but this pheromonal activity appears restricted to specific lineages, and it remains unknown how a female fertility pheromone is sensed for most fish species. Here, we utilize single-cell transcriptomics and CRISPR gene editing in a cichlid fish model to identify and test the roles of key genes involved in olfactory sensing of reproductive cues. We find that a pheromone receptor, Or113a, detects fertile cichlid females and thereby promotes male attraction and mating behavior, sensing a ligand other than PGF2α. Furthermore, while cichlid fishes exhibit extensive parental care, for most species, care is provided solely by females. We find that males initiate mouthbrooding parental care if they have disrupted signaling in ciliated sensory neurons due to cnga2b mutation or if or113a is inactivated. Together, these results show that distinct mechanisms of pheromonal signaling drive reproductive behaviors across taxa. Additionally, these findings indicate that a single pheromone receptor has gained a novel role in behavior regulation, driving avoidance of paternal care among haplochromine cichlid fishes. Lastly, a sexually dimorphic, evolutionarily derived parental behavior is controlled by central circuits present in both sexes, while olfactory signals gate this behavior in a sex-specific manner.

Combined high rates of alternative breeding strategies unexpectedly found among populations of a solitary nesting raptor.

Social monogamy is the prevalent mating system in birds, but alternative strategies of extra-pair paternity (EPP) and conspecific brood parasitism (CBP) occur in many species. Raptors are virtually absent in discussions of broad taxonomic reviews regarding EPP and CBP likely because these strategies are mostly absent or at low frequency; CBP is unreported in solitary nesting raptors. In contrast, we found high frequencies of EPP (16%-31%) and CBP (15%-26%) nests among three populations of Cooper's Hawks (Accipiter cooperii) across the northern breeding range of this solitary nesting, socially monogamous species. EPP and CBP combined occurred in 42%-46% of all nests among populations and hence unexpectedly were nearly equivalent to proportions of genetically monogamous nests. Select covariates failed to predict presence of EPP and CBP in part because virtually all extra-pair adults were uncaught and likely were floaters. We found no support for the hypothesis that territorial females traded copulations for food to maximize energy intake for increased production. Our unique discoveries enhance knowledge of the extent and diversity of alternative breeding strategies among groups of avian and other animal species.

Multi-objective optimal reconfiguration of distribution networks using a novel meta-heuristic algorithm

Reconfiguration strategies are used to reduce power losses and increase the reliability of the distribution systems. Since the optimal reconfiguration problem is a multi-objective optimization problem with non-convex functions and constraints, meta-heuristic algorithms are the most suitable choice for the problem-solving approach. One of the new meta-heuristic algorithms that exhibits excellent performance in solving multi-objective problems is the wild mice colony (WMC) algorithm, which is implemented based on aggressive and mating strategies of wild mice. In this paper, the distribution network reconfiguration problem is solved to reduce power losses, improve reliability, and increase the voltage profile of network buses using the WMC algorithm. In addition, the obtained results are compared with conventional multi-objective algorithms. The optimal reconfiguration problem is applied to the IEEE 33-bus and 69-bus test systems. The comparative study confirms the superior performance of the proposed algorithm in terms of convergence speed, execution time, and the final solution.

Water quality constrained adjustment planning for regional breeding management with nonlinear programming model under uncertainty in Wenchang City, China

Basin water pollution caused by livestock, poultry and fish breeding is still a serious problem for remote villages, however, reliable regional breeding management programming have the potentials to improve pollution status. This paper focuses on the optimal model design and water quality analysis of the livestock, poultry and fish breeding system for Wenchang City, China. Methods of multi-objective programming (MOP), interval parameter programming (IPP), fuzzy-stochastic parameter programming (FSPP), and chance constrained programming (CCP) were incorporated into the developed model to tackle multi uncertainties described by interval values, probability distributions, fuzzy membership function. Based on the estimation of local breeding potential and current situation of surface water section, a multi-objective mixed fuzzy-stochastic nonlinear programming optimization model is presented with one-dimensional water quality model. In order to evaluate the environmental carrying capacity of livestock, poultry and fishery manure, predict its development trend and investigate the implementation effect of different emission reduction policies, this paper designs quantization system of the urban water environmental carrying capacity for the model. The results indicated that the water environment pollutant absorption capacity and carrying capacity of Wenchang city have approached the limit especially the towns in the northeast of City which limited the overall development space of the City. The modeling results are valuable for supporting the adjustment of the existing livestock, poultry and fish breeding schemes within a complicated system benefit and surface water quality situation under uncertainty.

110. Compromising biosecurity? Dynamic changes in Corsican free-range pig breeding systems under new health constraints

110. Compromising biosecurity? Dynamic changes in Corsican free-range pig breeding systems under new health constraints

Optimal outbreeding is shaped during larval life-history in the splash pool copepod Tigriopus californicus.

Inbreeding and outbreeding depression are dynamic forms of selection critical to mating system evolution and the efficacy of conservation biology. Most evidence on how the relative severity and timing of these forces are shaped is confined to self-fertilization, distant outcrossing, and intermediate 'optimal outcrossing' in hermaphrodites. We tested the notion that closed population demographics may reduce and delay the costs of inbreeding relative to distant outbreeding in an intertidal copepod with separate sexes and a biphasic larval / post-metamorphic life-history (Tigriopus californicus). At three lifecycle stages (fecundity, metamorphosis, and post-metamorphosis), we quantified the effects of inbreeding and outbreeding in crosses with varying degrees of recent common ancestry. Although inbreeding and outbreeding depression have distinct genetic mechanisms, both manifested the same stage-specific consequences for fitness. Inbreeding and outbreeding depression were not apparent for fecundity, post-metamorphic survival, sex ratio, or the ability to acquire mates, but inbreeding between full siblings and outbreeding between interpopulation hybrids reduced the fraction of offspring that completed metamorphosis by 32% and 47%, respectively. On average, the effects of inbreeding on metamorphic rate were weaker and nearly twice as variable among families than those of outbreeding, suggesting genetic load was less pervasive than the incompatibilities accrued between divergent populations. Overall, our results indicate the transition from larval to juvenile life stages is markedly susceptible to both inbreeding and outbreeding depression in T. californicus. We suggest stage-specific selection acting concurrently with the timing of metamorphosis may be an instrumental factor shaping reproductive optima in species with complex life-histories.

Plumage polymorphism in raptors

ABSTRACT Trait polymorphisms are a perennially popular topic of study in ecology and evolutionary biology. Plumage polymorphisms occur broadly in birds, with a particularly high rate among the raptors. The regularity of this heritable, melanin-based trait in raptors has prompted research into its potential connections to aspects of life history such as immune response, foraging ecology, and mating systems. Because raptors are a non-monophyletic grouping of multiple orders, they can further be leveraged to explore the eco-evolutionary drivers of recurrent plumage polymorphism phenotypes. Here we characterize plumage polymorphism throughout the raptors and review the existing literature on factors involved in its development and maintenance. We identify patterns and trends in this past body of research and discuss the opportunity to strengthen our understanding of plumage polymorphism through a holistic research approach. Specifically, we detail the likely benefits of applying genomic tools to plumage polymorphism research in raptors while encouraging both a focus on unstudied polymorphic species and on the potential interactions among multiple hypotheses that might promote plumage polymorphism.

Evaluating the Potential of Double-Muscled Angus Sires to Produce Progeny from Dairy Cows to Meet Premium Beef Brand Specifications

In response to the increasing global demand for sustainable beef production, this review of the literature was undertaken to explore the possibility of using the progeny of cows in the pasture-based New Zealand dairy production system that are mainly of the Holstein–Friesian, Jersey, and Holstein–Friesian × Jersey-cross breeds, to produce beef that meets the standards demanded by the Certified Angus Beef® (CAB) standard. CAB is a United States of America (USA) benchmark for beef quality. Traditionally, the offspring of dairy breeds have not been suitable for producing high-quality beef due to their genetic makeup and physical characteristics. However, in the USA, breeding programmes have used genetic strategies to boost muscle meat yield in terminal-sire breeds like the Lim-Flex® and NuEra Genetics® T14 cattle lines. In these lines, selection has focused on enhancing muscling and other Angus traits, including ensuring the cattle are homozygous polled and black-coloured. The overall aim has been to alter the phenotypic characteristics of the offspring of dairy cows by terminal-sire crosses, so they resemble the phenotype of purebred Angus cattle and meet the CAB standard. The approach can involve using different alleles of the myostatin gene (MSTN) carried by the terminal Angus sires to increase carcass value from the dairy cow-derived male progeny (including the MSTN c.821(del11) allele or the myostatin protein p.F94L leucine-containing allele) to increase meat yield and eating characteristics. It is concluded that a targeted selection and mating strategy could provide another source of high-quality beef production, and one that also meets societal demands for better animal welfare and increased sustainability.

Parental-effect gene-drive elements under partial selfing, or why do Caenorhabditis genomes have hyperdivergent regions?

Self-fertile Caenorhabditis nematodes carry a surprising number of Medea elements, alleles that act in heterozygous mothers and cause death or developmental delay in offspring that don't inherit them. At some loci, both alleles in a cross operate as independent Medeas, affecting all the homozygous progeny of a selfing heterozygote. The genomic coincidence of Medea elements and ancient, deeply coalescing haplotypes, which pepper the otherwise homogeneous genomes of these animals, raises questions about how these apparent gene-drive elements persist for long periods of time. Here I investigate how mating system affects the evolution of Medeas, and their paternal-effect counterparts, peels. Despite an intuition that antagonistic alleles should induce balancing selection by killing homozygotes, models show that, under partial selfing, antagonistic elements experience positive frequency dependence: the common allele drives the rare one extinct, even if the rare one is more penetrant. Analytical results for the threshold frequency required for one allele to invade a population show that a very weakly penetrant allele, one whose effects would escape laboratory detection, could nevertheless prevent a much more penetrant allele from invading under high rates of selfing. Ubiquitous weak antagonistic Medeas and peels could then act as localized barriers to gene flow between populations, generating genomic islands of deep coalescence. Analysis of gene expression data, however, suggest that this cannot be the whole story. A complementary explanation is that ordinary ecological balancing selection generates ancient haplotypes on which Medeas can evolve, while high homozygosity in these selfers minimizes the role of gene drive in their evolution.

The use of anthropogenic areas helps explain male brown bear movement rates and distance travelled during the mating season

AbstractDuring the reproductive period, mating strategies are a significant driver of adaptations in animal behaviour. For instance, for polygamous species, greater movement rates during the mating season may be advantageous due to the increased probability of encountering several potential mates. The brown bear Ursus arctos is a solitary carnivore that lives at low densities, with a polygamous mating system and an extended mating season of nearly 3 months. Here, we hypothesized that male brown bears may show changes in movement patterns and space‐use behaviour during their mating season. Using long‐term (2002–2013) telemetry data from the Finnish Karelia male population (n = 24 individuals; n = 10 688 GPS locations), we first analysed daily movement metrics, that is, speed, net and total distance with respect to the period (mating vs. post‐mating) and several environmental predictors. Then, we conducted a step‐selection analysis for each of these periods. Throughout the year, male bears selected forested/shrub habitats and increased movement rates near main roads. During the mating season, reproductive needs seem to trigger roaming behaviour in adult males to maximize encounter rates with potential receptive females. However, all movement metrics increased within areas of high human activity, suggesting a bear response to a higher risk perception while using those areas. During the post‐mating period, overlapping with the bear hyperphagia and the hunting season, males selected anthropogenic areas farther from main roads and trails, suggesting a trade‐off between foraging opportunities and risk avoidance.

Extra-pair paternity in two passerine birds breeding in a gradient of urbanisation.

Urbanisation has been increasing worldwide in recent decades, driving environmental change and exerting novel selective pressures on wildlife. Phenotypic differences between urban and rural individuals have been widely documented in several taxa. However, the extent to which urbanisation impacts mating strategies is less known. Here, we investigated extra-pair paternity variation in great tits (Parus major) and blue tits (Cyanistes caeruleus) breeding in nestboxes set in a gradient of urbanisation in Warsaw, Poland, over three breeding seasons. Urbanisation was quantified as the amount of light pollution, noise pollution, impervious surface area (ISA) and tree cover within a 100-m radius around each nestbox. We obtained genotypes for 1213 great tits at 7344 SNP markers and for 1299 blue tits at 9366 SNP markers with a genotyping-by-sequencing method, and inferred extra-pair paternity by computing a genomewide relatedness matrix. We report higher extra-pair paternity in blue tits breeding in more urbanised areas, for example, with higher light pollution and ISA, and lower tree cover. However, no such trend was found in great tits. Late-stage survival of individual nestlings in both species was not associated with paternity or urbanisation proxies, thus we were not able to detect fitness benefits or drawbacks of being an extra-pair offspring in relation to urbanisation. Our results contribute to the growing body of knowledge reporting on the effects of urbanisation on avian ecology and behaviour, and confirm species-specific and population-specific patterns of extra-pair paternity variation.

Moving to mate? Migration strategy does not predict genetic structure or diversity in bats (Chiroptera)

Abstract How, when, and where animals move during mating periods directs gene-flow patterns across landscapes. Traits associated with movement, such as movement ability and migratory behaviour, are sometimes correlated with population genetic structure, but this relationship depends on where and when mating occurs relative to annual movements. With their wide diversity in behaviours and life-history strategies, bats provide a testing ground for hypotheses about population structure related to migration and mating. We used a global sample of microsatellite data (N = 233 sampling locations from 17 bat species) associated with published studies to examine links between genetic variation and short-distance, long-distance, or non-migratory strategies that also relate to varied mating strategies. The genetic measures we tested were population-specific differentiation, gene diversity, and allelic richness. Using Bayesian models that accounted for phylogenetic distances among species and spatial autocorrelation, we identified no correlations between migration strategy and genetic variation. Our results suggest that hypotheses about genetic structure being mediated by migration might not hold, in general, for bat species. We discuss the need for continued research into the complex association of ecological, biogeographical, and behavioural factors that facilitate gene flow among populations, especially in species with diverse movement patterns.

Modern breeding methods in forestry aimed at preserving genetic diversity

This research is devoted to analysing the impact of modern breeding measures in forestry on the level of genetic diversity of forest tree species. It has been found that the main source of improved seed material for the genetic restoration of forests is base forest seed orchards. Aspects of the influence of determining factors – background pollination and the number of clones – on the indicators of genetic variability of progeny have been analysed in detail. The potential of background pollination in forest seed orchards in the context of a significant decrease in the effectiveness of breeding measures and a parallel increase in the level of genetic variability of progeny has been studied. An analysis of data on the minimum number of clones in seed orchards has been carried out based on the practical experience of other developed countries. The dynamics of clone variability in terms of fertility have been investigated. The potential impact of clonal selection on the genetic diversity of tree species, particularly in reducing it, has been identified. It has been confirmed that integrating the concept of family forestry, which involves the use of vegetative propagation techniques, into the breeding strategy significantly increases the level of genetic variability in progeny. The study has demonstrated that the multiple-population breeding system provides the optimal preconditions for synergising the process of long-term intensive breeding and preserving the gene pool of tree species. It has been determined that there is no negative impact on genetic diversity from implementing a complex of optimally planned breeding programs. At the same time, the potential for intensifying the quality of gene pool conservation in the process of forest ecosystem restoration through the use of improved seed material and clones in artificial orchards has been established. Special attention is given to the maintenance of ex situ – valuable genetic material in forest seed production facilities, including forest seed orchards, trial cultures, and clone archives of plus trees. Research has shown that the implementation of modern innovative solutions and scientific recommendations can minimise the loss of genetic diversity in forest tree species. The results can be applied in contemporary forestry breeding programs

The effect of mixed honeybee drone semen on sperm quality characteristics: A preliminary study

Following copulation, sperm of multiple honeybee (Apis mellifera (A.m.) Linnaeus (Apidae)) drones are mixed inside the spermatheca of a queen, and sperm behaviour in this environment is of importance for sperm survival and successful fertilization. The polyandrous mating system of honeybees further may allow for cryptic female choice and sperm competition to select for specific sperm traits to enable successful reproduction. This preliminary study therefore examined multiple sperm quality parameters in mixed drone semen. Thirty-one drone ejaculates were collected and split to be mixed with one and two other drones’ semen. A computerised sperm analysis system was used for analysing sperm functionality parameters, at baseline and 60 minutes. Morphology measurements included head, tail, and total sperm length. Sperm concentration was significantly higher in three-drone samples compared to other groups (p < 0.001), while comparisons of sperm functional and morphometric parameters did not reveal differences. However, after 60 minutes, mixed semen samples displayed changes in terms of sperm functionality. The motility percentage significantly decreased in two-drone samples (p = 0.004). In contrast, three-drone samples had consistently lower motility and kinematic parameters at baseline, but following an hour it was the only group to show improvement in sperm progressive motility, swimming speed and kinematics. Sperm concentration correlated with the majority of functionality parameters, while, morphological measurements did not. Sperm functionality changes observed in this study, can be attributed to a combination of factors, including, mixing of drone semen, sperm concentration, and time allowing for potential sperm interaction.

Large, overlapping home ranges reveal male mating strategies in polygynandrous Eclectus parrots

ABSTRACT The distribution of the resources needed by females for reproduction affects their dispersion in space and time, which in turn influences the number of females a male can defend. When males provide parental care they in turn become a resource for females, and influence where females choose to breed. Combined, these factors explain a preponderance of monogamous and (to a lesser extent) polygynous mating systems in birds. However, less frequently observed mating systems in birds remain harder to explain. Here, we analyse the home ranges of male Eclectus parrots (Eclectus roratus) to investigate how their use of space facilitates an unusual polygynandrous mating system (where multiple males mate with multiple females). Female Eclectus parrots in the rainforests of northern Queensland, Australia, have limited movements. They remain at their nest trees for most of the year and rely on multiple wide-ranging males to bring them their food. We used light aircraft and VHF transmitters to track the movements of four male Eclectus parrots during the breeding season. We combined data on home range size with molecular analyses of a larger sample of breeding birds. Our analyses demonstrate that male home ranges overlap with each other and encompass multiple (3–14) trees with nesting females. We show that some males divide their time between, and gain reproductive success with, females up to 7 km apart. Our tracking and molecular data offer insights into how polygynandrous mating systems relate to space use among males and females.

Reduced fitness in losers of leg-biting male combat compared to uncontested males in Zophobas atratus

Sexual dimorphism and male combat are observed in many species. Often, the outcome of male combat affects the outcome of subsequent combats, mating success, number of sperm, and fitness of the male’s offspring. Also, the quantity and quality of sperm may be regulated by winning or losing, depending on species ecology and mating system. However, very few studies have experimentally examined the influence of fight outcomes on male offspring fitness. We studied male combat in the giant mealworm (Zophobas atratus) in which males bite each other’s hind legs. We hypothesized that subsequent fitness could differ between winners and losers in the escalated male combat of this species. We measured several fitness traits including the number of eggs laid by mated females, and the number of hatches sired by uncontested males, winners, and losers in escalated and non-escalated combat, and compared the fitness of each winner and loser to that of an uncontested male. We also measured mating duration. The numbers of eggs and the percentages of hatched eggs of losers in the escalated combat were significantly reduced compared to that of the uncontested males. This reduction may be due to injuries from escalated leg- biting fights and a result of the sperm amount of the uncontested males being greater than that of the loser males.

Genome-wide association analysis reveal candidate genes and haplotypes related to root weight in cucumber (Cucumis sativus L.).

The plant root system is critical for the absorption of water and nutrients, and have a direct influence on growth and yield. In cucumber, a globally consumed crop, the molecular mechanism of root development remains unclear, and this has implications for developing stress tolerant varieties. This study sought to determine the genetic patterns and related genes of cucumber root weight. A core cucumber germplasms population was used to do the GWAS analysis in three environments. Here, we investigated four root-weight related traits including root fresh weight (RFW), root dry weight (RDW), ratio of root dry weight to root fresh weight (RDFW) and the comprehensive evaluation index, D-value of root weight (DRW) deduced based on the above three traits for the core germplasm of the cucumber global repository. According to the D-value, we identified 21 and 16 accessions with light and heavy-root, respectively. We also found that the East Asian ecotype accessions had significantly heavier root than other three ecotypes. The genome-wide association study (GWAS) for these four traits reveals that 4 of 10 significant loci (gDRW3.1, gDRW3.2, gDRW4.1 and gDRW5.1) were repeatedly detected for at least two traits. Further haplotype and expression analysis for protein-coding genes positioned within these 4 loci between light and heavy-root accessions predicted five candidate genes (i.e., Csa3G132020 and Csa3G132520 both encoding F-box protein PP2-B1 for gDRW3.1, Csa3G629240 encoding a B-cell receptor-associated protein for gDRW3.2, Csa4G499330 encodes a GTP binding protein for gDRW4.1, and Csa5G286040 encodes a proteinase inhibitor for gDRW5.1). We conducted a systematic analysis of the root genetic basis and characteristics of cucumber core germplasms population. We detected four novel loci, which regulate the root weight in cucumber. Our study provides valuable candidate genes and haplotypes for the improvement of root system in cucumber breeding.