Breeding Plans Research Articles

Determination of Genetic Divergence Pattern of White Fly Resistant Cotton Cultivars by Using Microsatellite

Cotton is considered a cash crop in the agriculture sector, and whitefly infestation is one of the cotton crop's significant biotic stresses. This study aimed to identify whitefly Bemisia tabaci resistant cotton varieties that can be incorporated into a cotton breeding program to improve the cotton crop's quality, yield, and growth. In this study, we used 10 Microsatellite (SSR) markers for genetic diversity assessment among 50 genotypes of G. hirsutum. 58 loci were found by applying the NAU and BNL series primers. A maximum number of loci, eight, were amplified by SSR markers NAU-883, NAU-2714, and BNL-827, respectively. SSR marker JESPER-101 amplified a minimum number of the loci,i.e., 2. The PIC count ranged from 0.7215 to 0.8828, with a mean value of 0.4034. NAU 2161 displayed a maximum polymorphism value of 0.8828 and BNL 1672 showed a minimum polymorphism value of 0.4034. Cluster analysis grouped the 50 genotypes into four clusters. Cluster A holds 30 varieties. Cluster B includes 11 varieties. Cluster C had six varieties, and cluster D had 3. Genetic diversity is maximum in varieties NS-161, VH-307, and AGC-555, as they are located at the most significant distance in clusters. The SSR genetic profile for every cultivar made it conceivable to separate a few cultivars.
 To conclude, this investigation of the genetic divergence of cotton cultivars with SSR markers supports the need to bring new alleles into the genetic pool of the cultivars. It can help in assessing the best whitefly-resistant cotton variety. The information generated from diversity analysis studies will help in future breeding plans for improving the hereditary variety of cotton cultivars to fulfill the need for cotton development for various purposes.

Molecular characterization and A1/A2 genotyping of casein beta gene in zebu and crossbred cattle of Bangladesh

Casein beta (CSN2) is the most explored gene in cattle due to its potential impact on human health. Here, we investigated the entire coding sequence of CSN2 gene except the last two codons for detection of polymorphisms in different cattle populations of Bangladesh as well as genotyping of A1 and A2 allelic variants using a newly developed allele specific polymerase chain reaction (AS-PCR) based the genotyping protocol. Five primer pairs were used to amplify the coding sequences of CSN2 gene. This study included a total of 258 DNA samples from six Bangladeshi zebu populations and one Holstein Friesian (HF) derived crossbred cattle population. Sequence analysis detected five nonsynonymous mutations in the coding sequence of CSN2 gene that defined five allelic variants as A1, A2, B, F and I. In addition, substitution of GTA (Val) by GCA (Ala) at position 197 resulted in an undefined allele in the zebu cattle population of Bangladesh that has not yet been reported elsewhere. Like other Bos indicus cattle populations, A2 allele is predominant in the studied zebu populations. The mean frequencies of A1A1, A1A2 and A2A2 genotypes were 0.02, 0.16 and 0.82, respectively, in zebu cattle populations while the corresponding allele frequencies were A1 (0.10) and A2 (0.90). In opposite, the aforesaid genotype frequencies were 0.14 (A1A1), 0.50 (A1A2) and 0.36 (A2A2) in the HF crossbred population with allele frequencies of 0.39 (A1) and 0.61 (A2). The adopted AS-PCR method was found cost-effective, rapid and had high specificity for genotyping of A1 and A2 allelic variants. Altogether, this study provides information for the selection of desired zebu and crossbred individuals in order to produce premium quality milk as well as to design a breeding plan in the crossbreeding program.

Phenotypic, chemical component and molecular assessment of genetic diversity and population structure of Morinda officinalis germplasm

BackgroundMorinda officinalis How (MO) is a perennial herb distributed in tropical and subtropical regions, which known as one of the “Four Southern Herbal Medicines”. The extent of genetic variability and the population structure of MO are presently little understood. Here, nine morphological traits, six chemical components and Single nucleotide polymorphism (SNP) markers were used in integrative research of MO germplasm variation among 88 individuals collected from ten populations across four geographical provinces of China.ResultsBoth phenotype and chemical composition have significant genetic variation, and there is a certain correlation between them such as root diameter and the nystose content, as well as geographical distribution. The principal component analysis (PCA) showed the leaf length, leaf width, nystose, 1F-furanosaccharide nystose, and the section color were the major contributors to diversity. The cluster analysis based on phenotypic and oligosaccharide data distinguished three significant groups, which was consistent with the result of a corresponding analysis with 228,615 SNP markers, and importantly, they all showed a significant correlation with geographical origin. However, there was little similarity between two cluster results. The Shannon’s information index (I) varied from 0.17 to 0.53 with a mean of 0.37, suggesting a high level of genetic diversity in MO populations, which mainly existed among individuals within populations, accounting for 99.66% of the total according to the analysis of molecular variance (AMOVA) results. Each population also maintains the connection because of certain gene communication, so that the genetic differentiation between populations was not very significant. The STRUCTURE software was used to analyse the population structure and the result showed that 88 accessions were clustered into three groups, and 67% of them were pure type, which was also confirmed through PCA.ConclusionsThe comprehensive study of phenotypic, chemical and molecular markers will provide valuable information for future breeding plans and understanding the phylogenetic relationship of MO population.

Influence of institutional attributes on fulfillment of transfer and breeding recommendations in zoos and aquariums.

Compliance with Breeding and Transfer Plan (BTP) recommendations is important to promote long-term viability and meet the management goals of the Association of Zoos and Aquarium Species Survival Plans (SSPs®). However, individual institutions may fulfill recommendations at different rates, potentially compromising management efforts. We examined institution-level fulfillment rates of BTP recommendations (i.e, "Hold,""Send To,""Breed With," and "Do Not Breed"), and how rates differ based on institutional attributes related to resource levels, geographic location and climate, involvement in population management, and the SSPs in which institutions participated using conditional random forests and generalized linear mixed models. We analyzed 52,182 recommendations from 375 SSPs issued to 170 institutions in BTPs published from 2012 to 2019. Contrary to predictions, our results did not reveal large differences in fulfillment rates based on resources, geographic location, or climate variables at the institution level. We found modest patterns indicating that recommendation fulfillment for Hold and Do Not Breed recommendations in mammals was lower with longer interplanning periods, while fulfillment of Hold recommendations in birds increased with the average experience of individuals in SSP leadership roles. For herptiles, fulfillment of Send To recommendations was moderately higher in institutions with species spread across more herptile taxonomic advisory groups (the management unit for related species). Although our results suggest that overarching institutional factors do not have a strong influence on fulfillment rates at the scale of our study, more focused research within a specific temporal window, taxa, or suite of SSPs may reveal more informative patterns for population management.

The Status of Genetic Resources and Olive Breeding in Tunisia

The olive tree, an iconic symbol of the Mediterranean basin, is the object of growing international interest in the production of olive oil for the world food market. In Tunisia, which is the fourth-largest producer of olive oil in the world, the production of olives and olive oil is of great socio-economic importance. Cultivation is widespread from north to south, but it is carried out using traditional techniques that results in extremely irregular production levels. To maintain their competitiveness on the international market, Tunisian producers must improve the quality of the oil through breeding plans that enhance the rich genetic heritage that is still not adequately exploited. The objective of this review is to present the state of olive breeding in Tunisia, illustrating the opportunities available for a better use of the rich Tunisian genetic heritage, the challenges it must face, and the need to multiply the efforts for sustainability, even in the light of the challenges posed by climate changes.

Improving Drought Stress Tolerance in Ramie (Boehmeria nivea L.) Using Molecular Techniques.

Ramie is one of the most significant fiber crops and contributes to good quality fiber. Drought stress (DS) is one of the most devastating abiotic factors which is accountable for a substantial loss in crop growth and production and disturbing sustainable crop production. DS impairs growth, plant water relation, and nutrient uptake. Ramie has evolved a series of defense responses to cope with DS. There are numerous genes regulating the drought tolerance (DT) mechanism in ramie. The morphological and physiological mechanism of DT is well-studied; however, modified methods would be more effective. The use of novel genome editing tools like clustered regularly interspaced short palindromic repeats (CRISPR) is being used to edit the recessive genes in crops to modify their function. The transgenic approaches are used to develop several drought-tolerant varieties in ramie, and further identification of tolerant genes is needed for an effective breeding plan. Quantitative trait loci (QTLs) mapping, transcription factors (TFs) and speed breeding are highly studied techniques, and these would lead to the development of drought-resilient ramie cultivars. The use of hormones in enhancing crop growth and development under water scarcity circumstances is critical; however, using different concentrations and testing genotypes in changing environments would be helpful to sort the tolerant genotypes. Since plants use various ways to counter DS, investigating mechanisms of DT in plants will lead to improved DT in ramie. This critical review summarized the recent advancements on DT in ramie using novel molecular techniques. This information would help ramie breeders to conduct research studies and develop drought tolerant ramie cultivars.

Genome-Wide Association Study of Potential Meat Quality Trait Loci in Ducks.

With continuously increasing living standards and health requirements of consumers, meat quality is becoming an important consideration while buying meat products. To date, no genome-wide association study (GWAS) for copy number variants (CNVs) and single nucleotide polymorphisms (SNPs) has been conducted to reveal the genetic effects on meat quality in ducks. This study analyzed the phenotypic correlation and heritability of fat, water, collagen, and protein content of duck breast muscle. To identify the candidate variants for meat quality, we performed a GWAS using 273 ducks from an F2 population. The results of the SNP GWAS showed that the BARHL2, COPS7B, and CCDC50 genes were associated with fat content; BLM, WDR76, and EOMES with water content; CAMTA1, FGD5, GRM7, and RAPGEF5 with collagen production; and RIMS2, HNRNPU, and SPTBN1 with protein content. Additionally, 3, 7, 1, and 3 CNVs were associated with fat, water, collagen, and protein content, respectively, in duck breast muscle. The genes identified in this study can serve as markers for meat quality. Furthermore, our findings may help devise effective breeding plans and selection strategies to improve meat quality.

GENETIC IMPROVEMENT IN POPCORN

Popcorn consumption in Brazil has grown significantly over the years, and genetic improvement is essential to obtain sustainable gains in multiple traits to supply this increasing demand. Thus, the objective of this review was to contribute information concerning the process of popcorn breeding in tropical regions, germplasm availability, popcorn breeding plans, the main characteristics related to popcorn quality and yield, and advances and perspectives in the process of popcorn improvement. The main focus of breeding programs is to obtain hybrids from inbred lines with high popping expansion (40 mL g-1) and yield (4.000 kg ha-1). The genetic improvement performed in Brazil has presented significant advances, mainly due to work developed in public institutions with the development of new hybrids that present more significant popping expansion and yield. However, the number of cultivars is still low, and most of them are controlled by private companies. Therefore, intrapopulation methods are recommended to develop open-pollinated varieties with high popping expansion, and this trait can be used as an early predictor of promising inbred lines to obtain superior hybrids for grain quality. Furthermore, popping expansion can be quickly recovered in backcrosses involving the cross of common maize with an inbred popcorn line.

Fitting random regression models with Legendre polynomial and B-spline to model the lactation curve for Indian dairy goat of semi-arid tropic.

The present investigation aimed at genetic evaluation of tropical Indian dairy Jamunapari goat using random regression models (RRM) for the estimation of genetic parameters in the first three lactations across test days (TD) and also to come out with a pragmatic breeding plan in the nucleus. Variations in the lactation curves were modelled using 67,172 TD milk yield (TDMY) records. To obtain adequate and parsimonious models for the estimation of genetic parameters, orthogonal Legendre Polynomials (LP) and B-splines (BS) were compared. The analysis was carried out using a single-trait RRM approach. Average TDMY was 0.72, 0.81 and 0.79 kg in 1st to 3rd parities that also had 4th TD peak yield in common. BS function resulted in robust genetic parameters and a smoother curve for lactation as compared to LP. Maternal effects were evaluated and then dropped from the final model, owing to no significant contribution to the genetic variance. The best RRM was a quadratic BS function with six knots for the mean trend, curves of additive genetic, animal permanent environmental (c2 ) and 22 classes of residual variance. Additive variances and heritability (h2 ) estimates were higher in the early lactation. For first parity, the estimates of h2 varied between 0.19 to 0.35 across TD. Moderate h2 estimate suggests further scope for selection using desirable combinations of TD over the lactation. We observed a very high variance due to c2 across TD in three lactations. Genetic correlations were positive and larger between adjacent TDMY and weakened for distant TDMY. Looking into the robust estimates of genetic parameters and better fitting of lactation curve, we suggest the use of B-spline function for regular genetic evaluation of Jamunapari goat.

Progress in modern crop science research in wheat biology

Every crop breeding effort seeks to enhance production. Despite several advances, most worldwide breeding efforts have long sought to improve grain production potential, insect/pest/disease resistance, grain quality, and stress tolerance. Almost all wheat breeding programs aim to increase grain yield potential. Wheat breeders have achieved substantial improvements in crop yield. Genetic transformation, cloning, and genetic engineering increase production potential in wheat. The primary breeding strategy for wheat is the pedigree. However, hybrids and population improvement are also utilized. Breeders utilized biotechnology to increase breeding success. Biotechnology and genome editing are examples of current technology that can improve global agriculture production by assisting crop development. Traditional wheat breeding methods have been supplemented with biotechnology to speed up wheat improvement efforts. These methods will speed up wheat biology research and help to develop wheat breeding plans. However, many programs in developing countries (especially) are still trying to include them.

Estimates of genetic parameters for production and reproduction traits in Murrah buffaloes (Riverine buffalo) in India

Murrah is a predominant milch breed of buffalo in India with superior genetic potential for milk production. Estimation of genetic parameters for production and reproduction traits is prerequisite for making breeding plan and efficient management decisions. This work was undertaken to understand the influence on performance traits by various factors (genetic and non-genetic) along with assessment of genetic parameters in Murrah buffaloes. The genetic parameters were figured using mixed model least-squares analysis. The results revealed that season and period in which animals calved, affects the performance of Murrah breed and may be considered during its evaluation. The heritability estimates for first lactation 305 days/less milk yield (305FLMY), first lactation total milk yield (FLTMY), first Lactation Length (FLL1), Wet average (WA), Herd average (HA), Age at first calving (AFC1) and Age at first service (AFS1) were 0.39±0.10, 0.29±0.09, 0.14±0.09, 0.29±0.09, 0.3±0.11, 0.27±0.09 and 0.22±0.09, respectively. The phenotypic and genetic correlation amid 305FLMY and majority of another production trait were positive and significant. Thus, it may be concluded that appropriate estimation of genetic parameters leads to robust selection for performance traits for genetic improvement in Murrah buffalo.

Evaluation of Traditional and Indigenous Horse Breeds for Wider Intended Use: Case Study from Slovenia

In this work, a new multi-criteria model for the evaluation of traditional and indigenous horse breeds, the HORQUAL model, was developed by applying the DEX (Decision Expert) method. The idea for this study culminated from brainstorming among researchers who had the importance of conserving traditional and indigenous horse breeds in Slovenia and their universal uses (recreative and sport) in mind. The conservation of native domestic animal breeds is one of the important indicators of sustainable agricultural development in particular countries. Here, the assessment process considered the horse breeds in terms of lifestyle, expectations, requirements and experiences. The development process was based on the multi-criteria decision analysis approach, and it was applied to seven traditional and indigenous Slovenian horse breeds. The horse breeds were classified into four groups of breed ratings according to the chosen criteria. The horse breeds were categorised as follows: “does not correspond to the criteria”, “less correspondence with the criteria”, “corresponds to the criteria” and “completely corresponds to the criteria”. The results of the HORQUAL model clearly show that it is easier and more effective to choose the most suitable breeds for specific purposes (i.e., recreative/sport horses with the potential for breeding along with acceptable costs, favourable temperament and suitable price) as they can easily be analysed or compared with each other, according to the criteria chosen in this paper. The rating by group takes the criteria for the multi-attribute evaluation that were identified by an expert group into account and balances between the assessment of recreational and sports needs for riders and the life expectancy for breeders. Additionally, incorporating the Plus-minus-1 analysis proved to be a useful support tool to analyse the assessments and to further improve horse breeding plans.

Under-Canopy Regeneration of Scots Pine (Pinus sylvestris L.) as Adaptive Potential in Building a Diverse Stand Structure

Under-canopy natural regeneration of Scots pine (Pinus sylvestris L.) stand is able to create stands with a complex structure, which are characterised by greater resistance to extreme phenomena related to climate change. The main aim of the work was to analyse the potential of pine undergrowth, its role in the stand, and its usefulness in further breeding plans to create stands of various structure, with greater stability and tolerance to stress factors, including greater resistance to climate change. The study was carried out in north-eastern Poland, in pine stands thinned by strong (hurricane level) wind in 2002. The study area covers 225.2 ha and is located in 29 stands. Naturally regenerated pine saplings with a minimum height of 0.5 m, characterised by a high density, growing under the upper cover of the stand, with varying degrees of thinning, were qualified for the study. On average 7.820 pine saplings were recorded in the area of one hectare. Over 65% of the examined saplings were determined to be of very good or good quality, prognostic for further development and the creation of the main stand in the future. The principle of increasing the structural diversity of stands is the method of increasing the adaptability of forests to environmental changes.

Reprint: Investigation of Genetic Divergence in Local Sunflower Hybrids and Inbred Lines by Applying Morphological Markers

Knowledge of genetic diversity is the basic requisite for any plant breeding program. Seventeen sunflower hybrids and fifteen inbred lines including ten Cytoplasm male sterile lines and five restorer lines were evaluated at the experimental area of National Agriculture Research centre, Islamabad, Pakistan during autumn-2011. The objective of study was to investigate the genetic diversity, categorize the proficient cross combiners and approximate characters association among sunflower hybrids and inbred lines. Data was estimated on i.e. flower initiation days, full flowering days, full developmental days, height of plant, disk diameter, stem thickness, leaves per plant, hundred achenes weight, achenes yield and oil content percentage. The maximum achenes yield was contributed by Hysun-33 2119 kg ha-1. Followed by SMH-0924 and SMH-0925, SMH-1028 and SMH-0926 were suggested as potential significant hybrids for future breeding plans to incorporate maximum achenes yield and oil content percentage. The CMS-11, CMS-25 and CMS-10 were long statured with vigorous stem and all the restorers were early maturing recommended for including in hybridization program to generate high heterotic factions. Cluster diagram based on Euclidean dissimilarity matrix grouped hybrids as well as inbred lines in four groups. The group I and IV consist of four whereas group II and group III have three and five hybrids respectively. All the restores were clustered in III and IV and CMS in I and II groups respectively. According to principle component analysis the first two components contribute 64% and 89% in total variation in hybrids as well as in inbred lines respectively.

Construction of a high-density genetic map using specific-length amplified fragment markers and identification of QTLs for branching angle in poplar.

Branching angle is a critical factor that determines the morphological establishment and is a typical quantitative trait controlled by multiple genes. In this study, we used SLAF-seq to construct a high-density genetic map, to investigate the genetic architecture of branching angle in poplar (Populus leucopyramidalis). A total of 240,672 SLAF tags were obtained, including 103,691 polymorphic SLAF tags. After filtering, 53,407 polymorphic markers were sorted into eight segregation types, and 11,162 of them were used to construct the genetic map. 8447 were on the female parent map, 8532 were on the male parent map, and 11,162 were on the integrated map. The marker coverage was 4820.84 and 5044.80cM for the female and male maps, and 3142.61cM for the integrated map. The average intervals between two adjacent mapped markers were 0.55, 0.59, and 0.28cM for the three maps, respectively. Two quantitative trait loci (QTLs) were detected. Seven markers that exceeded the threshold in these two regions were considered as being associated with branching angle and the phenotypic variance explained by each of these marker was 10.64-11.66%. After functional annotation, we identified 15 candidate genes and analyzed the expression of candidate genes in narrow and wide crown progenies by qRT-PCR. These results show that the combination of QTL and SLAF-seq will contribute to future breeding plans in poplar breeding, especially in narrow crown poplar breeding.

Linkage Disequilibrium and Effective Population Size of Buffalo Populations of Iran, Turkey, Pakistan, and Egypt Using a Medium Density SNP Array.

Linkage disequilibrium (LD) across the genome provides information to identify the genes and variations related to quantitative traits in genome-wide association studies (GWAS) and for the implementation of genomic selection (GS). LD can also be used to evaluate genetic diversity and population structure and reveal genomic regions affected by selection. LD structure and Ne were assessed in a set of 83 water buffaloes, comprising Azeri (AZI), Khuzestani (KHU), and Mazandarani (MAZ) breeds from Iran, Kundi (KUN) and Nili-Ravi (NIL) from Pakistan, Anatolian (ANA) buffalo from Turkey, and buffalo from Egypt (EGY). The values of corrected r 2 (defined as the correlation between two loci) of adjacent SNPs for three pooled Iranian breeds (IRI), ANA, EGY, and two pooled Pakistani breeds (PAK) populations were 0.24, 0.28, 0.27, and 0.22, respectively. The corrected r 2 between SNPs decreased with increasing physical distance from 100 Kb to 1 Mb. The LD values for IRI, ANA, EGY, and PAK populations were 0.16, 0.23, 0.24, and 0.21 for less than 100Kb, respectively, which reduced rapidly to 0.018, 0.042, 0.059, and 0.024, for a distance of 1 Mb. In all the populations, the decay rate was low for distances greater than 2Mb, up to the longest studied distance (15 Mb). The r 2 values for adjacent SNPs in unrelated samples indicated that the Affymetrix Axiom 90 K SNP genomic array was suitable for GWAS and GS in these populations. The persistency of LD phase (PLDP) between populations was assessed, and results showed that PLPD values between the populations were more than 0.9 for distances of less than 100 Kb. The Ne in the recent generations has declined to the extent that breeding plans are urgently required to ensure that these buffalo populations are not at risk of being lost. We found that results are affected by sample size, which could be partially corrected for; however, additional data should be obtained to be confident of the results.

Reasons for unfulfilled breeding and transfer recommendations in zoos and aquariums.

One of the primary tools for cooperatively managing animal populations within the Association of Zoos and Aquariums is through Breeding and Transfer Plan (BTP) recommendations. These recommendations consider population demographics, genetics, husbandry, and institutional needs and aim to improve population viability and long‐term sustainability. However, fulfilling (i.e., completing) recommendations can be complicated by biological and logistical challenges. We examined institutional reasons for unfulfilled Breed With, Do Not Breed, Hold, and Send To recommendations collected in surveys in PMCTrack, software for tracking recommendation fulfillment, using descriptive and text‐mining methods. Overall, 73 Animal Programs used PMCTrack to distribute 2335 surveys and accrued responses from 167 zoos and aquariums from 2007 to 2019, with a response rate of 56% (n = 1307). For Breed With recommendations, common reasons were related to an individual animal's status and a pair's breeding behavior; for all other recommendation types, reasons were often management or logistical factors. Most Breed With recommendations were attempted (≥55%) but did not result in detectable pregnancy/eggs or offspring, due to pair incompatibility or not enough time to successfully produce offspring. Hold and Do Not Breed recommendations were often unfulfilled because the BTP recommendation was replaced with an interim (i.e., updated) recommendation during the inter‐planning period. Our results support the importance of some common population management practices, such as maintaining breeding pairs/groups for multiple BTPs to improve mate familiarity, examining husbandry mechanisms to promote breeding success, and making a concerted effort to adhere to planning timelines to facilitate transfers in alignment with breeding seasons.

Assessment of gene action association involved with economic traits of black carrot (Daucus carota)

Carrots (Daucus carota L.) are rich sources of vitamins, phytonutrients, bioactive compounds and health promotingproperties. Recent increased awareness of nutritional security has resulted in a dramatic increase in carrot consumption,necessitating increased carrot production by farmers and growers. Understanding the genetic design of economictraits including root length, root weight, root diameter, core diameter, and flesh thickness, as well as developing anappropriate breeding plan for these traits, will help accomplish those ambitious goals. Gene action experiments wereconducted at ICAR-Indian Agricultural Research Institute during 2012–15 in order to estimate the type and magnitudeof gene action in order to develop a breeding strategy for recognizing segregants with desirable horticultural traits.Four inbred lines such as Pusa Asita, Pusa Rudhira, Pusa Kulfi, Pusa Meghali were used to develop three crosses, viz.Pusa Asita × Pusa Kulfi, Pusa Asita × Pusa Meghali, Pusa Asita × Pusa Rudhira to achieve the objectives. The findingsconfirmed that the exact composition of gene effects varied through crosses and demonstrated the role of additiveas well as non-additive gene effects in the inheritance of different traits, with a preponderance of the latter. Due tothe parallel function of complementary gene effects, non-epistatic gene interactions for economic yield contributingtraits have been found; thus, hybrid exploitation could be efficiently used by heterosis breeding by using favourablepositive [h] and [l] gene interaction and effects. This genetic information is more helpful to formulate suitable breedingmethodology for identifying the segregants with desirable horticultural traits.

Prediction of genetic gains for breeding objective traits and designing selection schemes for Washera and Gumuz indigenous sheep

In Ethiopia,there are 32.85 millions of sheep,more than 99 % of which are indigenous.However,the productivity of local sheep under traditional production system is low with high mortality of sheep.There are two ways of improving performance of sheep and goats,namely improving the enviroment of animals and/or improving there genetic potential.The aim of this study was to predict genetic gains of breedingobjective traits and select the best sheep selection scheme for Gumuz andWashera sheep. Body size(six month weight and yearling weight) and litter size were breeding objective traits identified by own flock animal ranking experiment and personal interview. Deterministic approach of ZPLAN computor program is used for modeling input parametres of Gumuz and Washera sheep and simulating breeding plans using gene flow method and selection index procedures. One-tier cooperative sheep breeding scheme were proposed whereby ram exchange between and within villages is the main means of genetic dissimination. Genetic gains predicted for six month weight of Gumuz and Washera sheep were 0.43 and 0.55 kg,respectively. Genetic gains predicted for yearling weight of Gumuz and Washera sheep were 0.55 and 0.60 kg,respectively. Genetic gains predicted for litter size of Gumuz and Washera sheep were 0.08 and 0.09 lambs,respectively. The lower rate of inbreeding, the higher monetary genetic gain for aggregate genotype,higher return to investmnet and higher profit/ewe/year were quality measures of breeding program considered to prefer scheme 4 for both Gumuz and Washera sheep.Hence,for both Gumuz and Washera sheep populations a sheep selection scheme designed with 15 % selection proportion and one year ram use for breeding was recommended. Special emphasis need to be given to yearling weight with higher predicted genetic response and higher percentage return to investment.

Wild gut microbiomes reveal individuals, species, and location as drivers of variation in two critically endangered Hawaiian honeycreepers.

BackgroundThe gut microbiome of animals is an important component that has strong influence on the health, fitness, and behavior of its host. Most research in the microbiome field has focused on human populations and commercially important species. However, researchers are now considering the link between endangered species conservation and the microbiome. In Hawaiʻi, several threats (e.g., avian malaria and habitat loss) have caused widespread population declines of Hawaiian honeycreepers (subfamily: Carduelinae). These threats can have a significant effect on the avian gut microbiome and may even lead to disruption of microbial function. However, the gut microbiome of honeycreeper in the wild has yet to be explored.MethodsWe collected 13 and 42 fecal samples, respectively, from two critically endangered honeycreeper species, the ʻakikiki (Oreomystis bairdi) and the ʻakekeʻe (Loxops caeruleirostris). The 16S rRNA gene was sequenced and processed though a MOTHUR-based bioinformatics pipeline. Bacterial ASVs were identified using the DADA2 program and bacterial community analyses, including alpha and beta diversity measures, were conducted using R packages Phyloseq and vegan.ResultsA total of 8,958 bacterial ASVs were identified from the fecal samples. Intraspecific differences in the gut microbiome among individual birds explained most of the variation present in the dataset, however differences between species did exist. Both species had distinct microbiomes with minimal overlap in beta diversity. ‘Akikiki had a more diverse microbiome compared to ‘akekeʻe. Additionally, small but stastically significant differences in beta diversity also exist between sampling location and sexes in ʻakikiki.ConclusionʻAkikiki and ʻakekeʻe are currently the focus of captive breeding efforts and plans to translocate the two species to other islands are underway. This baseline knowledge will help inform management decisions for these honeycreeper species in their native habitats, on other islands, and in captivity.