Breeding Individuals Research Articles

A Comparison of Strategies for Selecting Breeding Pairs to Maximize Genetic Diversity Retention in Managed Populations

Captive breeding programs aim to maintain populations that are demographically self-sustaining and genetically healthy. It has been well documented that the best way for managed breeding programs to retain gene diversity (GD) and limit inbreeding is to select breeding pairs that minimize a population's average kinship. We used a series of computer simulations to test 4 methods of minimizing average kinship across a variety of scenarios with varying generation lengths, mortality rates, reproductive rates, and rates of breeding pair success. "Static MK Selection" and "Dynamic MK Selection" are 2 methods for iteratively selecting genetically underrepresented individuals for breeding, whereas "Ranked MK Selection" and "Simultaneous MK Selection" are 2 methods for concurrently selecting the group of breeding individuals that produce offspring with the lowest average kinship. For populations with discrete generations (24 tested scenarios), we found that the Simultaneous and Ranked MK Selection methods were generally the best, nearly equivalent methods for selecting breeding pairs that retained GD and limited inbreeding. For populations with overlapping generations (198 tested scenarios), we found that Dynamic MK Selection was the most robust method for selecting breeding pairs. We used these results to provide guidelines for identifying which method of minimizing average kinship was most appropriate for various breeding program scenarios.

Role of SLC11A1 gene in disease resistance

Genetic improvement in livestock was achieved earlier by selective breeding of individuals with superior phenotypes. Now due to the advances in molecular genetics and biotechnology candidate genes of economic traits can be included in selection for breeding programmes. Genes responsible for the resistance/susceptibility to infections with various pathogens (Major Histo Compatibility (MHC) genes, Solute Carrier family11 member A1 (SLC11A1) gene, Toll Like Receptor (TLR) genes etc.), have been recently identified and characterized in human beings as well as in many animals. Among these the role of SLC11A1 gene is very important due to its association with resistance/ susceptibility to various intracellular pathogens in human as well as in livestock species. The SLC11A1 gene, formerly known as natural resistance-associated macrophage protein 1 (NRAMP1) encodes an integral membrane protein regulating the activity of macrophages. Genetic resistance/ susceptibility to diseases due to candidate gene polymorphisms could be used in selection and breeding for disease resistance in animals.

Dynamics of sex ratio in populations of cyclomorphic mammals (rodentia, cricetidae, muridae)

Using the result of long-term monitoring (over 30 years) of the main population parameters of cyclomorphic mammals (genera Clethrionomys, Microtus, and Sylvaemus) in the Il’men Reserve (Chelyabinsk oblast, the Southern Urals), the phenomenology of the sex ratio and its dynamics in their natural populations are analyzed. The main factors potentially influencing the sex structure of rodents are considered, including isolation of settlements, relative abundance, population density, species-specific features, alternative types of ontogeny, exposure to extreme factors, sex-dependent asynchronous mortality, and age cross. It is shown that the analysis of sex structure in rodents should be performed taking into account the type of their ontogeny, with the CMR method (capture-marking-recapture) giving the most objective estimate of the sex ratio. An alternative approach is to analyze samples taken in autumn to winter, after the end of breeding and elimination of reproductive individuals from the population. It is concluded that the dynamics of the sex structure in murine rodents are conditioned ecologically and that no selective elimination of individuals depending on sex takes place upon overwintering. The sex ratio in cyclomorphic mammals is a variable parameter that fluctuates about the average value depending on both regular and random factors. Methodological recommendations are given for the assessment of sex structure in cyclomorphic mammals.

Linking anti-predator behaviour and habitat quality: group effect in nest defence of a passerine bird

In habitats where the density of breeding individuals is higher, breeding success has been shown to increase with the number of close conspecific and heterospecific neighbours. However, the mechanisms linking habitat quality, group size of prey individuals and offspring defence are poorly known. In this field study, we examined the relationships between habitat quality and parental nest defence behaviour in the pied flycatcher (Ficedula hypoleuca). We found that mobbing is more intense in unmanaged forests where birds breed in more dense and diverse communities than in heavily managed young forests where heterospecific densities are lower. We also found that the mobbing activities of pied flycatchers breeding in unmanaged mature boreal forests attracted more neighbouring prey individuals than in nearby managed forests. This study shows that habitat quality-mediated effects might be responsible for the decreased group size of mobbing birds in managed forests, which may lead to less effective communal defence.

Reproductive state does not influence activity budgets of eusocial Ansell's mole-rats, Fukomys anselli (Rodentia, Bathyergidae): A study of locomotor activity by means of RFID

Ansell's mole-rats ( Fukomys anselli) live in families of a breeding pair and several overlapping generations of their non-breeding offspring. Locomotor activity of 47 Ansell's mole-rats from six laboratory families was recorded for a week using radio frequency identification (RFID). This technique allowed monitoring each animal's activity without isolating them from other members of their family. Animals were active about 17% of the recording time, and older animals were significantly less active than younger ones. Females tended to be slightly more active than males. There was no significant difference in the amount of activity between breeding and non-breeding individuals. Consequently, the activity pattern does not seem to account for previously reported differences in longevity between breeding and non-breeding animals.

Carryover Effects Associated with Winter Location Affect Fitness, Social Status, and Population Dynamics in a Long-Distance Migrant

We used observations of individually marked female black brant geese (Branta bernicla nigricans; brant) at three wintering lagoons on the Pacific coast of Baja California-Laguna San Ignacio (LSI), Laguna Ojo de Liebre (LOL), and Bahía San Quintín (BSQ)-and the Tutakoke River breeding colony in Alaska to assess hypotheses about carryover effects on breeding and distribution of individuals among wintering areas. We estimated transition probabilities from wintering locations to breeding and nonbreeding by using multistratum robust-design capture-mark-recapture models. We also examined the effect of breeding on migration to wintering areas to assess the hypothesis that individuals in family groups occupied higher-quality wintering locations. We used 4,538 unique female brant in our analysis of the relationship between winter location and breeding probability. All competitive models of breeding probability contained additive effects of wintering location and the 1997-1998 El Niño-Southern Oscillation (ENSO) event on probability of breeding. Probability of breeding in non-ENSO years was 0.98 ± 0.02, 0.68 ± 0.04, and 0.91 ± 0.11 for females wintering at BSQ, LOL, and LSI, respectively. After the 1997-1998 ENSO event, breeding probability was between 2% (BSQ) and 38% (LOL) lower than in other years. Individuals that bred had the highest probability of migrating the next fall to the wintering area producing the highest probability of breeding.

Exogenous corticosterone and nest abandonment: A study in a long-lived bird, the Adélie penguin

Breeding individuals enter an emergency life-history stage when their body reserves reach a minimum threshold. Consequently, they redirect current activity toward survival, leading to egg abandonment in birds. Corticosterone (CORT) is known to promote this stage. How and to what extent CORT triggers egg abandonment when breeding is associated with prolonged fasting, however, requires further investigation.We manipulated free-living male Adélie penguins with CORT-pellets before their laying period. We then examined their behavioral response with respect to nest abandonment in parallel with their prolactin levels (regulating parental care), and the subsequent effects of treatment on breeding success in relieved birds.Exogenous CORT triggered nest abandonment in 60% of the treated penguins ~14days after treatment and induced a concomitant decline in prolactin levels. Interestingly, prolactin levels in treated penguins that did not abandon their nest were higher at the point of implantation and also after being relieved by females, when compared with abandoning penguins. Among successful birds, the treatment did not affect the number of chicks, nor the brood mass.Our results show the involvement of CORT in the decision-making process regarding egg abandonment in Adélie penguins when incubation is associated with a natural long fast. However, we suggest that CORT alone is not sufficient to trigger nest abandonment but that 1) prolactin levels need to reach a low threshold value, and 2) a rise in proteolysis (i.e. utilization of protein as main energy substrate) seems also to be required.

The Age Structure of a Breeding Population of Hynobius lichenatus (Amphibia, Caudata)

Abstract: Using the lines of arrested growth (LAGs), we estimated the age structure of a breeding population and individual ages at sexual maturity of a salamander, Hynobius lichenatus, from Sendai, northeastern Japan. No significant sexual differences were detected in either the age structure or the age at maturity, and the breeding individuals ranged from 5 to 14 yrs old, while the age of their maturation ranged from 3 to 7 yrs old. Reasons for this difference in minimal ages remain to be studied. There was no significant correlation between the age and the body size of the salamanders. Hynobius lichenatus does not differ from its close relative H. tokyoensis from Tokyo in age structure, but mature significantly later, with a longer life, than H. tokyoensis from Chiba. These findings suggest that the age structure of these salamander populations is affected at most partially by temperature conditions, and more strongly by other environmental, ecological, or phylogenetic factors.

Antioxidant Defenses Predict Long-Term Survival in a Passerine Bird

BackgroundNormal and pathological processes entail the production of oxidative substances that can damage biological molecules and harm physiological functions. Organisms have evolved complex mechanisms of antioxidant defense, and any imbalance between oxidative challenge and antioxidant protection can depress fitness components and accelerate senescence. While the role of oxidative stress in pathogenesis and aging has been studied intensively in humans and model animal species under laboratory conditions, there is a dearth of knowledge on its role in shaping life-histories of animals under natural selection regimes. Yet, given the pervasive nature and likely fitness consequences of oxidative damage, it can be expected that the need to secure efficient antioxidant protection is powerful in molding the evolutionary ecology of animals. Here, we test whether overall antioxidant defense varies with age and predicts long-term survival, using a wild population of a migratory passerine bird, the barn swallow (Hirundo rustica), as a model.Methodology/Principal FindingsPlasma antioxidant capacity (AOC) of breeding individuals was measured using standard protocols and annual survival was monitored over five years (2006–2010) on a large sample of selection episodes. AOC did not covary with age in longitudinal analyses after discounting the effect of selection. AOC positively predicted annual survival independently of sex. Individuals were highly consistent in their relative levels of AOC, implying the existence of additive genetic variance and/or environmental (including early maternal) components consistently acting through their lives.ConclusionsUsing longitudinal data we showed that high levels of antioxidant protection positively predict long-term survival in a wild animal population. Present results are therefore novel in disclosing a role for antioxidant protection in determining survival under natural conditions, strongly demanding for more longitudinal eco-physiological studies of life-histories in relation to oxidative stress in wild populations.

Nest predation reduces benefits to early clutch initiation in northern cardinals Cardinalis cardinalis

Life history theory and empirical studies suggest that early breeding confers higher reproductive success, but the extent to which this advantage can be generalized to human-dominated systems and across species is less well understood. We studied the fitness consequences of clutch initiation for 181 female northern cardinals Cardinalis cardinalis and 1228 nests in forests within urban and rural landscapes of Ohio, USA between 2004-2007. Cardinals that bred earlier made significantly more nesting attempts, but cumulative number of young fledged was similar to that of later-breeding individuals. The expected number of fledglings produced per successful nest was unrelated to date and remained ~1.8 fledglings across the season, despite the fact that nest survival rates improved dramatically as the season progressed. Because the probability of resighting breeding individuals in subsequent years was unrelated to first clutch initiation date, we have no evidence that clutch initiation affected adult survival. The absence of a clear benefit to early breeding appears to be a consequence of high rates of nest predation early in the breeding season.

Translating <i>natural selection</i>: true concept, but false term?

This paper focuses on the translation of the term “natural selection” in some European languages (mostly French and German). It adopts a historical and philosophical perspective on the term “natural selection” to emphasize the power of words in science. Although natural selection is probably Darwin’s most significant contribution to the theory of evolution, the phrase itself has been strangely and largely neglected by historians. This paper tries to understand why Darwin maintained the term in spite of the considerable dispute which it provoked from 1859, when the Origin of Species was first published. Indeed, Darwin thought it useful since it is both a technical term and one that nicely encapsulates an analogy with the practice of breeders. However, what Darwin saw as linguistic and conceptual efficiency entailed great difficulties in translating the term, and also in understanding it—as is clearly evidenced by ever-recurring debates on the “agential” connotations of selection. Besides, processes of translation suggest that the phrase “natural selection” gained a technical value before its sense was fully understood and a general theory of natural selection was well established. The study of the French translation of “natural selection” leads to another important result. I claim that French breeders did not have the word sélection; and if they were actually “choosing” individuals for breeding and leading breeding experiments over several generations, the absence of the term is nonetheless indicative of important differences between the practices in France and in the United Kingdom. The case of Vilmorin’s method of “maddening” [“affolement”] is indicative of those different “philosophies of breeding”: although “affolement” is a choice of mates, it differs from selection as it is not the patient accumulation of minute variations in a definite direction but a perturbation of the organization as a whole.

The Age Structure of a Breeding Population of Hynobius lichenatus (Amphibia, Caudata)

Using the lines of arrested growth (LAGs), we estimated the age structure of a breeding population and individual ages at sexual maturity of a salamander, Hynobius lichenatus, from Sendai, northeastern Japan. No significant sexual differences were detected in either the age structure or the age at maturity, and the breeding individuals ranged from 5 to 14 yrs old, while the age of their maturation ranged from 3 to 7 yrs old. Reasons for this difference in minimal ages remain to be studied. There was no significant correlation between the age and the body size of the salamanders. Hynobius lichenatus does not differ from its close relative H. tokyoensis from Tokyo in age structure, but mature significantly later, with a longer life, than H. tokyoensis from Chiba. These findings suggest that the age structure of these salamander populations is affected at most partially by temperature conditions, and more strongly by other environmental, ecological, or phylogenetic factors.

Correlates of male fitness in captive zebra finches - a comparison of methods to disentangle genetic and environmental effects

BackgoundIt is a common observation in evolutionary studies that larger, more ornamented or earlier breeding individuals have higher fitness, but that body size, ornamentation or breeding time does not change despite of sometimes substantial heritability for these traits. A possible explanation for this is that these traits do not causally affect fitness, but rather happen to be indirectly correlated with fitness via unmeasured non-heritable aspects of condition (e.g. undernourished offspring grow small and have low fitness as adults due to poor health). Whether this explanation applies to a specific case can be examined by decomposing the covariance between trait and fitness into its genetic and environmental components using pedigree-based animal models. We here examine different methods of doing this for a captive zebra finch population where male fitness was measured in communal aviaries in relation to three phenotypic traits (tarsus length, beak colour and song rate).ResultsOur case study illustrates how methods that regress fitness over breeding values for phenotypic traits yield biased estimates as well as anti-conservative standard errors. Hence, it is necessary to estimate the genetic and environmental covariances between trait and fitness directly from a bivariate model. This method, however, is very demanding in terms of sample sizes. In our study parameter estimates of selection gradients for tarsus were consistent with the hypothesis of environmentally induced bias (βA = 0.035 ± 0.25 (SE), βE = 0.57 ± 0.28 (SE)), yet this differences between genetic and environmental selection gradients falls short of statistical significance.ConclusionsTo examine the generality of the idea that phenotypic selection gradients for certain traits (like size) are consistently upwardly biased by environmental covariance a meta-analysis across study systems will be needed.

New records, distribution and status of six seabird species in Brazil

Distribution records of poorly-known species are currently the most explored theme in the Brazilian seabird literature. If properly evaluated, this kind of information can improve our knowledge on distribution, migration and status of occurrence of these species. In this note we present new records for six species of poorly-known seabirds in the Brazilian coast, reviewing distribution records and defining their status of occurrence in the country. We consider Chionis albus (Gmelin, 1789) a pseudo-vagrant in Brazil and define its status as a scarce seasonal visitor from southern South America. We present the first records of Leucophaeus atricilla (Linnaeus, 1758) for Trindade Island, and of Leucophaeus pipixcan (Wagler, 1831) for the state of Rio Grande do Sul, and determined that the former is a vagrant in eastern Brazil and the latter a vagrant across the country. Anous stolidus (Linnaeus, 1758) is a vagrant in southernmost Brazil. We were unable to determine if records of Chlidonias niger (Linnaeus, 1758) for Brazil and southern South America refer to vagrancy or pseudo-vagrancy. Additionally, we verified the occurrence of breeding individuals of Anous minutus Boie, 1844 on Martin Vaz Island and confirmed that there is no evidence of breeding on neighboring Trindade Island.

Does breeding status influence haematology and blood biochemistry of yellow-legged gulls?

We compared the haematological and biochemical values within a population of yellow-legged gulls (Larus michahellis) in the Chafarinas Islands (Northern Africa), in non-breeding (February) and breeding (May) animals. We collected blood samples from 51 adults. We found that according to the haematological data, there was a significant variation in haemoglobin content, and a higher proportion of heterophils, thrombocytes, and Haemoproteus infection in breeding individuals with a lower level in basophils. Blood biochemistry showed a higher level in plasmatic proteins, calcium, phosphorus, thiobarbituric acidreactive substances and alkaline phosphatase as well as alanine aminotransferase activity in breeding animals while cholesterol and phospholipid levels showed a lower level. There was also a sexual difference in triglycerides, albumin, thiobarbituric acid-reactive substances and alkaline phosphatase activity. Hence, the haematological and blood chemistry values of yellow-legged gulls showed some differences between breeding and non-breeding individuals as well as between sexes.

Interference from long-tailed finches constrains reproduction in the endangered Gouldian finch

1. Interspecific interference competition for nest-sites among cavity-nesting birds can have important effects on reproductive fitness and the distribution of competing species. 2. We observed interference at nest-sites in free-living populations of the endangered Gouldian finch (Erythrura gouldiae) and sympatric long-tailed finch (Poephila acuticauda), and also experimentally tested the relative strength and effect of interference at nest-sites in captive populations. 3. Levels of competitive interference at nest-sites in the wild were high for Gouldian, but not long-tailed finches, and interference frequency was inversely related to Gouldian finch reproductive success. High levels of interference conferred reduced fledging success but did not affect offspring condition. 4. Captive experiments corroborated the field data, also demonstrating fitness costs of interspecific competition, and that long-tailed finches dominated resources under standardized conditions. 5. Such asymmetrical competition dynamics are likely to constrain reproduction in Gouldian finch populations, potentially affecting recruitment and hindering the recovery of remaining populations of this endangered species.

Parentage assignment in Haliotis midae L.: a precursor to future genetic enhancement programmes for South African abalone

The establishment and evaluation of family lines using pedigree information provides an advanced understanding of the variability that exists for complex, economically valuable traits and is a necessary step in the execution of an effective breeding programme. The aim of this study was to assign parentage to mass-spawned Haliotis midae juveniles using species-specific microsatellite markers. Screening of wild abalone individuals revealed that the nine loci selected complied with the minimum requirements for parentage analyses: a null allele frequency <5% as well as a high number and frequency of alleles per locus. A total of 598 individuals were genotyped (198 breeding individuals and 400 F1 progeny) from two farms, with parentage results yielding 91% and 90% successful assignment for Farms A and B respectively. This study, therefore, provided the necessary pedigree information required for controlled breeding of individual adult abalone and indicated the usefulness of the panel of microsatellite markers selected for parentage assignment.

Age‐specific response of a migratory bird to an experimental alteration of its habitat

1. Recruitment, i.e. the influx of new breeding individuals into a population, is an important demographic parameter, especially in species with a short life span. Few studies have measured this parameter in solitary-breeding animal populations even though it may yield critical information on habitat suitability and functional connectivity. 2. Using a before-after, control-impact pairs (BACIP) experimental design, we measured: (i) the return rate and apparent survival rate of individually marked territorial males of a neotropical migrant bird species, the Ovenbird Seiurus aurocapilla Linnaeus and (ii) the age-specific recruitment rate. Study plots (n = 10) were paired: one was treated through single-tree selection harvesting (30-40% basal area removal) and the other acted as a control. We hypothesized that experienced males would out-compete inexperienced ones and tend to avoid settling in lower-quality, treated stands. 3. In the first year post-harvest, the mean density of territorial males was significantly lower in treated plots (-41%) than in controls and the difference remained relatively stable thereafter. This lower density mainly reflected a lower recruitment rate compared to controls (17.9 vs. 49.0% of males present), itself driven by a lower recruitment rate of experienced males (2.8 vs. 22.8%). Return rate was similar between controls and treated plots in the first year post-harvest (59 vs. 55%, respectively) but it decreased in treated plots during the second (-15.8% relative to controls) and third (-12.7%) year post-harvest. The trend was even stronger when considering only experienced males. The treatment was followed by a major expansion in mean territory size in treated plots (+49% relative to controls, 3rd year post-treatment). 4. Neither apparent survival rate nor recruitment rate varied as predicted. There was a strong year effect but no treatment effect on apparent survival rate, whereas male recruitment patterns were both year- and age-specific. Three years post-harvest, recruitment rate was sufficient to fill most territory vacancies in treated plots, due mainly to first-time breeders. 5. To our knowledge, this is the first study documenting the effects of experimental habitat alteration on recruitment rate in a songbird species using a BACI design. The response of this male subpopulation highlights the influence of recruitment on the density of open populations of solitary-nesting birds and age-specific patterns in the response of individuals to habitat alterations.

Is the Geographic Distribution of Nesting in the Kemp's Ridley Turtle Shaped by the Migratory Needs of Offspring?

Across the geographic area that a species uses for reproduction, the density of breeding individuals is typically highest in locations where ecological factors promote reproductive success. For migratory animals, fitness depends, in part, on producing offspring that migrate successfully to habitats suitable for the next life-history stage. Thus, natural selection might favor reproduction in locations with conditions that facilitate the migration of offspring. To investigate this concept, we studied the Kemp's ridley sea turtle (Lepidochelys kempii) to determine whether coastal areas with the highest levels of nesting have particularly favorable conditions for hatchling migration. We modeled the passive drift of young Kemp's ridley turtles from seven nesting regions within the Gulf of Mexico to foraging grounds using the particle-tracking program ICHTHYOP and surface-current output from HYCOM (HYbrid Coordinate Ocean Model). Results revealed that geographic regions with conditions that facilitate successful migration to foraging grounds typically have higher abundance of nests than do regions where oceanographic conditions are less favorable and successful migration is difficult for hatchlings. Thus, our findings are consistent with the hypothesis that, for the Kemp's ridley turtle and perhaps for other migrants, patterns of abundance across the breeding range are shaped in part by conditions that promote or impede the successful migration of offspring.

Older can be better: physiological costs of paternal investment in the Florida scrub-jay

In species that undergo actuarial senescence, the value of current reproduction is predicted to increase relative to the value of future reproduction with age, as the probability of survival to another reproductive event is reduced. Therefore, life history theory predicts that aging animals should increase their investment in reproduction. However, an increase in reproductive investment may carry significant costs to the breeding individuals. We recorded provisioning rates of Florida scrub-jay male breeders, followed by their immediate capture to assess body condition and collect blood for an in vitro test of immunocompetence and an assay of baseline corticosterone for a measure of stress. Older males provisioned offspring and brooding mates at the highest rates. There was no evidence of any physiological deficits in males with high provisioning rates, independent of age. It appears that birds that survive to old age are high quality birds that maintain good physiological condition, which complements the value of experience and permits maximal investment in offspring.