Breakdown Of Organic Matter Research Articles

Regulation of soil organic carbon stock with physical properties in alluvial soils of Bihar

Soil temperature and water content govern the breakdown of soil organic matter (SOM), which has a large impact on SOC storage. Apparently soil organic carbon is an excellent indicator of soil health. In this experiment, the association between several soil health indices such as soil organic carbon (SOC), soil texture, and wet aggregate stability was investigated (WAS). It was discovered that there is a substantial positive relationship between wet aggregate stability and soil organic carbon storage. Soil carbon store in East Champaran soils ranged from 5.27 to 19.60 mg/ha, with an average of 12.98 mg/ha. The wet aggregate stability ranged from 3.82 to 36.43 %, with a mean of 16.11 %. Wet aggregate stability was shown to increase as the organic carbon storage in the soil increased. This experiment also indicated that clay (%) and silt (%) had a direct impact on wet aggregate stability and, as a result, soil organic carbon storage. As a result, wet aggregate stability and soil texture have a direct and favourable influence on soil organic carbon storage in East Champaran, Bihar soils

Dissipation and effect of glyphosate during composting of organic wastes.

The addition of organic matter (OM) containing glyphosate during compost production, through the introduction of contaminated plant residues or sewage sludge, presents a risk of hindering the proper OM breakdown carried out by microorganisms and causing the accumulation of glyphosate or aminomethylphosphonic acid (AMPA). To measure the effect of glyphosate and glyphosate-based herbicide (GBH) on OM decomposition as well as the dissipation of glyphosate to AMPA during composting, a controlled-environment experiment was conducted using mesocosm-scale vessels. Analytical-grade (AG) glyphosate (150mg kg-1 ) and GBH (VisionMAX) equivalent to the amounts applied in agricultural areas (300mg kg-1 ) were added to a mixture of green residues, which were then composted for 112 d. Sampling after 2, 7, 28, and 112 d showed a negligible effect of glyphosate and GBH on physicochemical properties of the mixture (temperature, OM%, pH, total carbon [C], total nitrogen [N], and C/N ratio), ammonification, nitrification, and phosphate content. No differences between AG glyphosate and GBH treatments were measured. Glyphosate levels decreased significantly after 2 d to reach 53.1 and 71.1% of the initial content for the AG glyphosate and GBH treatments, respectively, and glyphosate dissipation was almost complete after 112 d of composting. Aminomethylphosphonic acid could not be detected at any time during the experiment regardless of the treatment. Our results show that conditions for OM decomposition were maintained despite the addition of glyphosate and suggest that only trace amounts of glyphosate or AMPA are likely to be present in mature compost.

Methane production controls in a young thermokarst lake formed by abrupt permafrost thaw.

Methane (CH4) release to the atmosphere from thawing permafrost contributes significantly to global CH4 emissions. However, constraining the effects of thaw that control the production and emission of CH4 is needed to anticipate future Arctic emissions. Here are presented robust rate measurements of CH4 production and cycling in a region of rapidly degrading permafrost. Big Trail Lake, located in central Alaska, is a young, actively expanding thermokarst lake. The lake was investigated by taking two 1 m cores of sediment from different regions. Two independent methods of measuring microbial CH4 production, long term (CH4 accumulation) and short term (14C tracer), produced similar average rates of 11 ± 3.5 and 9 ± 3.6 nmol cm−3 d−1, respectively. The rates had small variations between the different lithological units, indicating homogeneous CH4 production despite heterogeneous lithology in the surface ~1 m of sediment. To estimate the total CH4 production, the CH4 production rates were multiplied through the 10–15 m deep talik (thaw bulb). This estimate suggests that CH4 production is higher than emission by a maximum factor of ~2, which is less than previous estimates. Stable and radioactive carbon isotope measurements showed that 50% of dissolved CH4 in the first meter was produced further below. Interestingly, labeled 14C incubations with 2‐14C acetate and 14C CO2 indicate that variations in the pathway used by microbes to produce CH4 depends on the age and type of organic matter in the sediment, but did not appear to influence the rates at which CH4 was produced. This study demonstrates that at least half of the CH4 produced by microbial breakdown of organic matter in actively expanding thermokarst is emitted to the atmosphere, and that the majority of this CH4 is produced in the deep sediment.

Back to the Future: Restoring Northern Drained Forested Peatlands for Climate Change Mitigation

Draining peatlands for forestry in the northern hemisphere turns their soils from carbon sinks to substantial sources of greenhouse gases (GHGs). To reverse this trend, rewetting has been proposed as a climate change mitigation strategy. We performed a literature review to assess the empirical evidence supporting the hypothesis that rewetting drained forested peatlands can turn them back into carbon sinks. We also used causal loop diagrams (CLDs) to synthesize the current knowledge of how water table management affects GHG emissions in organic soils. We found an increasing number of studies from the last decade comparing GHG emissions from rewetted, previously forested peatlands, with forested or pristine peatlands. However, comparative field studies usually report relatively short time series following rewetting experiments (e.g., 3 years of measurements and around 10 years after rewetting). Empirical evidence shows that rewetting leads to lower GHG emissions from soils. However, reports of carbon sinks in rewetted systems are scarce in the reviewed literature. Moreover, CH4 emissions in rewetted peatlands are commonly reported to be higher than in pristine peatlands. Long-term water table changes associated with rewetting lead to a cascade of effects in different processes regulating GHG emissions. The water table level affects litterfall quantity and quality by altering the plant community; it also affects organic matter breakdown rates, carbon and nitrogen mineralization pathways and rates, as well as gas transport mechanisms. Finally, we conceptualized three phases of restoration following the rewetting of previously drained and forested peatlands, we described the time dependent responses of soil, vegetation and GHG emissions to rewetting, concluding that while short-term gains in the GHG balance can be minimal, the long-term potential of restoring drained peatlands through rewetting remains promising.

Microalgal-bacterial granular sludge process for sustainable municipal wastewater treatment: Simple organics versus complex organics

As an emerging sustainable process, knowledge of microalgal-bacterial granular sludge (MBGS) for the treatment of complex organic wastewater is limited, which hinders its further technical application. In this work, the MBGS process for the disposal of wastewater with simple and complex organic substances was evaluated in a comparable manner. The results showed that the average COD, nitrogen and phosphorus removal efficiencies for wastewater containing simple/complex organic matter were 75.2/84.9%, 96.6/89.3% and 76.2/85.3%, respectively. It has been found that complex organics can promote granule size growth and bacteria growth, as evidenced by the decrease in chlorophyll content and cellular carbon-nitrogen ratio compared to simple organics. Chloroflexi became the dominant bacterium of MBGS for potential contribution to the breakdown of complex organic matter. In addition, the settling property of MBGS has been improved and the extracellular protein of MBGS has been strengthened by complex organic substances. During a one-cycle reaction, CO2 levels could be reduced by about 300 ppm, suggesting that a carbon-neutral target for wastewater treatment by MBGS is possible. This research complements knowledge of MBGS for real wastewater treatment.

Nitrogen availability mediates the priming effect of soil organic matter by preferentially altering the straw carbon-assimilating microbial community

Straw incorporation into soil increases carbon (C) sequestration but can induce priming effects (PE), the enhanced breakdown of soil organic matter. The direction and magnitude of PE and the consequences for the C balance induced by straw addition depend on nitrogen (N) availability and soil management history. Using 13C-labeled maize straw, we conducted a 56-day incubation to determine the dynamics of PE and the underlying microbial mechanisms after straw and/or mineral N addition to three soils with contrasting cultivation and fertilization histories, i) unfertilized soil (Unfertilized), ii) 8 years farmyard manure amended soil (Manured), and iii) abandoned cropland soil (Abandoned). 13C-PLFAs (phospholipid fatty acids) were analyzed to identify microbial groups utilizing straw and to explore their contribution to the PE. Straw addition increased microbial biomass (MBC), activities of enzymes related to the C and N cycles, and changed microbial community composition. SOC decomposition was enhanced by microbes activated by straw addition, leading to a positive cumulative PE ranging from 494 to 789 μg C g−1 soil. The magnitude of positive PE and straw decomposition in the manured soil was higher than that in the unfertilized and abandoned soils due to larger MBC and higher enzyme activities, resulting in a lower net SOC gain. Compared with straw only, the combination of straw addition with N fertilizer did not influence MBC, but increased positive PE (average increase of 18.1%) and straw decomposition (17.1%), further limiting SOC gain. 13C-labeled fungi: bacteria ratios and Gram-positive (G+): negative (G−) bacteria ratios increased with the increasing PE after N fertilization, but soil-derived (un-labeled) PLFAs remained stable. Random forest analysis further showed that straw C-assimilating microbial attributes are important predictors in driving the greater PE after N addition. Our study highlights the importance of straw C-assimilating fungi and G+ bacteria in mediating N-induced PE in arable soils.

Physico-chemical and Carbon Stock Analysis of Soil under Forest Ecosystem

Temperature and moisture levels in the soil are two of the most important factors that determine the rate of soil respiration. Changes in the microclimate of the soil throughout the year play an essential part in determining seasonal fluctuations in the amount of carbon dioxide that is emitted from the soil at individual locations, and climatic variances because varying rates of soil respiration at distant sites. In forest ecosystems, one essential step in the cycling of carbon is the transfer of carbon dioxide from the soil to the atmosphere. The in-situ measurement of the increase in CO2 concentration at the soil’s surface is often what is meant when people talk about “soil respiration.” At the level of soils, CO2 emission is induced by both plant and microbial activities, including root respiration and the breakdown of organic matter in soil and litter. According to some reports, soils are responsible for between 60 and 80 percent of the overall respiration of an ecosystem. Microorganisms that live in the soil and the litter are responsible for the vast majority of heterotrophic respiration that occurs in forest ecosystems. A measurement of soil respiration in a substrate that is deteriorating has been recognised as a helpful indication of the rate of decomposition and mineralization of organic matter, as well as the cycling of carbon in an ecosystem, and as an index of relative soil biological activity. In order to investigate the physicochemical properties, bacterial and fungal populations, and soil respiration of various land use zones in Indian forest, the present study was carried out.

Investigating the role of soil mesofauna abundance and biodiversity for organic matter breakdown in arable fields.

Intact soil food webs are pivotal to maintaining essential soil functions, such as carbon recycling, sequestering, and biomass production. Although the functional role of micro‐ (e.g., bacteria and fungi) and macrofauna (e.g., earthworms) is comparatively well established, the importance of the mesofauna community (e.g., abundance and diversity of Acari and Collembola) in maintaining soil functionality is less clear. We investigated this question in a six‐month field experiment in arable soil by actively manipulating mesofauna abundance and biodiversity through the application of two legacy insecticides (lindane and methamidophos) at sufficiently high doses to reduce mesofauna abundance (well above previously registered application rates; 2.5 and 7.5 kg a.s./ha for lindane, and 0.6 and 3 kg a.s./ha for methamidophos) and measure the impact on organic matter degradation. Our results demonstrate that both insecticides had reduced Collembola and Acari abundances by up to 80% over the study's six‐month duration. In addition, we observed less pronounced and more complex changes in mesofauna biodiversity over time. These included insecticide‐dependent temporal fluctuations (both reduction and increase) for different estimates (indices) of local (alpha)‐diversity over time and no lasting impact for most estimates after six months. Even at these exceptionally high field rates, Collembola and Acari diversity was observed to generally recover by six months. In contrast, considering organic matter breakdown, we found no evidence of a treatment‐related effect. These results suggest that organic matter breakdown in arable soils is likely driven by other trophic levels (e.g., microorganisms or earthworms) with only a limited influence of the mesofauna community. We discuss these findings with regard to their implications for our current understanding of soil food web function and future European soil risk assessments. Integr Environ Assess Manag 2022;18:1423–1433. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Targeting Mitochondrial Metabolism and RNA Polymerase POLRMT to Overcome Multidrug Resistance in Cancer.

Clinically, the prognosis of tumor therapy is fundamentally affected by multidrug resistance (MDR), which is primarily a result of enhanced drug efflux mediated by channels in the membrane that reduce drug accumulation in tumor cells. How to restore the sensitivity of tumor cells to chemotherapy is an ongoing and pressing clinical issue. There is a prevailing view that tumor cells turn to glycolysis for energy supply due to hypoxia. However, studies have shown that mitochondria also play crucial roles, such as providing intermediates for biosynthesis through the tricarboxylic acid (TCA) cycle and a plenty of ATP to fuel cells through the complete breakdown of organic matter by oxidative phosphorylation (OXPHOS). High OXPHOS have been found in some tumors, particularly in cancer stem cells (CSCs), which possess increased mitochondria mass and may be depends on OXPHOS for energy supply. Therefore, they are sensitive to inhibitors of mitochondrial metabolism. In view of this, we should consider mitochondrial metabolism when developing drugs to overcome MDR, where mitochondrial RNA polymerase (POLRMT) would be the focus, as it is responsible for mitochondrial gene expression. Inhibition of POLRMT could disrupt mitochondrial metabolism at its source, causing an energy crisis and ultimately eradicating tumor cells. In addition, it may restore the energy supply of MDR cells to glycolysis and re-sensitize them to conventional chemotherapy. Furthermore, we discuss the rationale and strategies for designing new therapeutic molecules for MDR cancers by targeting POLRMT.

Observations on Earthworm Communities and Soils in Various Natural and Man-Affected Ecosystems

Earthworms are important members of the soil fauna since they regulate fundamental soil functions such as organic matter breakdown, fertility, structure and water balance. However, so far, their community assemblages have been poorly investigated in Greece. In this context, the earthworm communities of forty five sites in Greece, belonging to three types of ecosystems—terrestrial water bodies, undisturbed (natural) sites and cultivated (agricultural and urban) fields—were investigated using the combined method of digging and hand sorting followed by the application of a 0.4% formaldehyde solution. Specific soil parameters and various environmental characteristics were examined as potential factors affecting the abundance and species richness. The results showed no statistically significant difference between ecosystem densities. The species number was significantly different between ecosystems, with the cultivated fields exhibiting richer communities, with a mean of 5.3 ± 0.6 species per site compared to the natural areas with 2.4 ± 0.5 species per site, while the water bodies showed intermediate numbers (3.6 ± 0.5 species per site). Finally, earthworm densities were positively correlated with species number and percentage vegetation cover and negatively with clay. These results may contribute to understanding how different land uses affect earthworm communities.

Urbanisation process generates more independently-acting stressors and ecosystem functioning impairment in tropical Andean streams

The tropical Andes are experiencing rapid population growth and urbanisation has become a major driver impairing stream ecosystems. However, knowledge about multiple-stressors effects on urbanised Andean streams is lacking. In southern Ecuador, we assessed how multiple stressors determine the structural (aquatic invertebrate metrics) and functional (organic matter breakdown and delta N of primary consumers) attributes of streams in a densely populated watershed without wastewater treatment and with contrasting land uses. We found that urbanised streams exhibited individual-stressor effects and that stressor interactions were rare. While structural and function attributes responded negatively to urbanisation, ecosystem functioning metrics were influenced most. Stream ecosystem functions were influenced by water-chemistry stressors, whereas aquatic invertebrate metrics were influenced by physical-habitat stressors. We suggest that managers of urbanised streams in the Andes immediately focus on the most important stressors by reducing inputs of inorganic N and P, re-establishing stream flow and substrate heterogeneity, and restoring riparian vegetation instead of attempting to elucidate intricate interactions among stressors. Our result also demonstrate that stream biomonitoring programs would benefit from a combination of structural and functional indicators to assess anthropogenic effects in a multiple-stressors scenario.

Sediment Resuspension and Associated Extracellular Enzyme Activities Measured ex situ: A Mechanism for Benthic-Pelagic Coupling in the Deep Gulf of Mexico

Sediment resuspension caused by near-bed currents mediates exchange processes between the seafloor and the overlying water column, known as benthic-pelagic coupling. To investigate the effects of sediment resuspension on microbial enzyme activities in bottom waters (<500 m), we conducted onboard erosion experiments using sediment cores taken with a multi-corer from six deep-sea sites in the northern Gulf of Mexico. We then incubated the core-top water with resuspended sediments in roller tanks to simulate bottom water conditions following sediment resuspension. Bacterial cell abundance, particulate organic matter content, and potential rates of three hydrolytic enzymes (leucine aminopeptidases – PEP; β-glucosidases – GLU, lipases – LIP) were monitored during the experimentally-generated erosion events and subsequently in the roller tanks to examine whether resuspension of deep-sea sediments enhances activities of extracellular enzymes in overlying waters. Surficial sediments were resuspended at critical shear stress velocities between 1.4 and 1.7 cm s–1, which parallel bottom water currents of 28 and 34 cm s–1. Only one of our nine cores resisted experimentally generated bottom shear stresses and remained undisturbed, possibly as a result of oil residues from natural hydrocarbon seeps at the investigated site. The most notable enzymatic responses to sediment resuspension were found for LIP activities that increased in overlying waters of all eight of our resuspended cores and remained at high levels during the roller tank incubations. PEP and GLU showed orders of magnitude lower rates and more variable responses to experimentally resuspended sediments compared with LIP. We also found a disconnect between enzyme activities and bacterial cell numbers, indicating a major role of extracellular enzymes physically disconnected from microbial cells in our experiments. Our results demonstrate that sediment resuspension may promote organic matter breakdown in bottom waters by supplying extracellular enzymes without requiring a bacterial growth response. The marked increase in LIP activity suggests that resuspended enzymes may affect the degradation of petroleum hydrocarbons, including those from the natural seeps that are abundant in the investigation area.

Toxicity of Workplace Aluminum Particles: Insights from Earthworm (Eisenia fetida) Tests in Soil Mixtures

Lifestyle changes have led to increasing use of alternative materials in building construction, fabrication of furniture and household appliances. Apart from the associated light weight and aesthetics, Aluminum products endure various pressures that range from climatic factors to pest attacks; hence, they are more durable than wood and other conventional materials. Activities of fabricators are widespread in many Nigerian cities and these result in traces of Aluminum particles derived from cutting, shaping and surface filing. The resulting recalcitrant dust particles can exert adverse consequences on biota. Therefore, this study examined the effects of different levels of Aluminum particles on earthworm in soil mixtures by assessing their behaviour, mobility and mortality in a five-week ecotoxicity test. Worms became sluggish after only two-week exposure and this culminated in loss of mobility and ultimately mortality in exposed organisms. Mortality of worms was highest (80 – 100%) in soil mixtures with the most proportion of Aluminum particles and decreased correspondingly with contaminant levels. However, there was no mortality of worms in soil mixtures without any Aluminum particles. Lethal concentration (LC50) values of 2.564g/kg, 0.995g/kg and 0.851/kg were determined at two, four and five weeks, respectively. The results suggest that worms in the course of foraging in soil, can internalize contaminating Aluminum particles, which may lead to adverse consequences in exposed population. Considering the role of earthworms in breakdown of soil organic matter and nutrient cycling, indiscriminate disposal of Aluminum particles across various landscapes may have consequences on soil fertility, food security and sustainability.

Lower relative abundance of ectomycorrhizal fungi under a warmer and drier climate is linked to enhanced soil organic matter decomposition.

The aboveground impacts of climate change receive extensive research attention, but climate change could also alter belowground processes such as the delicate balance between free-living fungal decomposers and nutrient-scavenging mycorrhizal fungi that can inhibit decomposition through a mechanism called the Gadgil effect. We investigated how climate change-induced reductions in plant survival, photosynthesis and productivity alter soil fungal community composition in a mixed arbuscular/ectomycorrhizal (AM/EM) semiarid shrubland exposed to experimental warming (W) and/or rainfall reduction (RR). We hypothesised that increased EM host plant mortality under a warmer and drier climate might decrease ectomycorrhizal fungal (EMF) abundance, thereby favouring the proliferation and activity of fungal saprotrophs. The relative abundance of EMF sequences decreased by 57.5% under W+RR, which was accompanied by reductions in the activity of hydrolytic enzymes involved in the acquisition of organic-bound nutrients by EMF and their host plants. W+RR thereby created an enhanced potential for soil organic matter (SOM) breakdown and nitrogen mineralisation by decomposers, as revealed by 127-190% increases in dissolved organic carbon and nitrogen, respectively, and decreasing SOM content in soil. Climate aridification impacts on vegetation can cascade belowground through shifts in fungal guild structure that alter ecosystem biogeochemistry and accelerate SOM decomposition by reducing the Gadgil effect.

Divergent responses of CO2 and CH4 fluxes to changes in the precipitation regime on the Tibetan Plateau: Evidence from soil enzyme activities and microbial communities

Carbon fluxes (CO2 and CH4) are important indicators of the response of alpine meadow ecosystems to global climate change. Alpine meadows on the Qinghai-Tibet Plateau are sensitive to climate change. Although the temporal allocation of precipitation can vary, its intensity is expected to increase, and its frequency is expected to decrease in the future. In this study, a manipulative field experiment was conducted to investigate how carbon fluxes are altered in response to moderate and severe changes in the precipitation regime. Fluctuations in CH4 flux were large under a severely altered precipitation regime (range of −0.048–0.038 mg m−2 h−1). Severe changes in the precipitation regime significantly reduced soil CH4 uptake by approximately 54.3%. This was probably affected by the decrease in the dissolved organic carbon concentration and changes in the microbial community (mainly Gammaproteobacteria), which were induced by variation in soil water conditions under various precipitation regimes. Under moderate changes in the precipitation regime, the average value of CO2 fluxes (ecosystem respiration) was 698.21 ± 35.19 mg m−2 h−1, which was significantly decreased by 20.7% compared with the control. This likely stems from the suppression of enzyme activity (particularly α-1,4-glucosidase and β-1,4-glucosidase) and the alteration of microbial community structure in this treatment, which led to a decrease in organic matter breakdown and a reduction in the release of CO2 to the atmosphere. However, CO2 fluxes were slightly (i.e., not significantly) decreased under the severely altered precipitation regime. Such different responses of CO2 flux are probably driven by differences in microbial strategies. This study not only increases our understanding of the mechanisms underlying the adaptation of alpine meadow ecosystems to global climate change but also provides new insight into the carbon source/sink functions of alpine meadows.

Effect of carcass contamination on necrophagous invertebrate performance

BackgroundThe breakdown of dead organic matter is driven by a diverse array of organisms and is an important process increasingly impacted by a range of contaminants. While many studies have documented how contaminants affect food webs that are fueled by decaying plant litters, much less is known about how contaminants affect organisms that rely on dead animal material. Here, we begin to explore the effects of food contamination—using silver nanoparticles (AgNPs) as a model contaminant—on the carrion beetle Nicrophorus vespilloides that buries carcasses of small vertebrates in soils as food source and larval nursing grounds.ResultsOur data show that a single ingestion of a non-lethal dose of 1 μg mL−1 AgNPs by adult female beetles does not affect overall gut microbial activity but results in shifts in the gut microbial community composition towards pathogens including Alcaligenes, Morganella, and Pseudomonas. While no effects were observed in offspring clutch size, some reductions were visible in clutch weight, number of larvae, and number of eclosing pupae in exposed N. vespilloides in comparison with controls. Repeated ingestion of AgNPs over several weeks led to a decrease in survival of adult beetles, suggesting that more environmentally realistic exposure scenarios can directly affect the success of carcass-feeding animals.ConclusionsSub-lethal carcass contamination with a model pollutant can affect the gut microbial composition in female beetles and reduce offspring fitness. This encourages consideration of currently overlooked propagation routes of contaminants through necrophagous food webs and inherent consequences for ecological and evolutionary processes.

Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs.

Ectomycorrhizal (EcM) and saprotrophic fungi interact in the breakdown of organic matter, but the mechanisms underlying the EcM role on organic matter decomposition are not totally clear. We hypothesized that the ecological relations between EcM and saprotroph fungi are modulated by resources availability and accessibility, determining decomposition rates. We manipulated the amount of leaf litter inputs (No-Litter, Control Litter, Doubled Litter) on Trenched (root exclusion) and Non-Trenched plots (with roots) in a temperate deciduous forest of EcM-associated trees. Resultant shifts in soil fungal communities were determined by phospholipid fatty acids and DNA sequencing after 3 years, and CO2 fluxes were measured throughout this period. Different levels of leaf litter inputs generated a gradient of organic substrate availability and accessibility, altering the composition and ecological relations between EcM and saprotroph fungal communities. EcM fungi dominated at low levels of fresh organic substrates and lower organic matter quality, where short-distances exploration types seem to be better competitors, whereas saprotrophs and longer exploration types of EcM fungi tended to dominate at high levels of leaf litter inputs, where labile organic substrates were easily accessible. We were, however, not able to detect unequivocal signs of competition between these fungal groups for common resources. These results point to the relevance of substrate quality and availability as key factors determining the role of EcM and saprotroph fungi on litter and soil organic matter decay and represent a path forward on the capacity of organic matter decomposition of different exploration types of EcM fungi.

Abiotic predictors of fine sediment accumulation in lowland rivers

The delivery of excessive fine sediment (particles < 2 mm in diameter) to rivers can cause serious deleterious effects to aquatic ecosystems and is widely acknowledged to be one of the leading contributors to the degradation of rivers globally. Despite advances in using biological methods as a proxy, physical measures remain an important method through which fine sediment can be quantified. The aim of this study was to provide further insights into the environmental variables controlling sediment accumulation in lowland gravel bed rivers. We sampled 21 sites, during spring and autumn, selected to cover a gradient of excess fine sediment. Fine sediment was sampled using a range of methods including visual assessments, the disturbance method, and suspended sediment concentrations. A range of abiotic predictors was measured during sampling, and hydrological and antecedent flow indices were derived from local flow gauging station data. The results show reach scale visual estimates of fine sediment to be significantly and highly correlated with fully quantitative estimates of total surface sediment. Multivariate regression analysis showed that flow variables (regime, antecedent, and local flow characteristics) were strong predictors of deposited sediment metrics but poor predictors of suspended sediment. Organic content was shown to be relatively independent of total sediment quantity and is likely driven by other factors which influence the supply and breakdown of organic matter.

Body size affects lethal and sublethal responses to organic enrichment: Evidence of associational susceptibility for an infaunal bivalve

Eutrophication is an increasing problem worldwide and can disrupt ecosystem processes in which macrobenthic bioturbators play an essential role. This study explores how intraspecific variation in body size affects the survival, mobility and impact on sediment organic matter breakdown in enriched sediments of an infaunal bivalve. A mesocosm experiment was conducted in which monocultures and all size combinations of three body sizes (small, medium and large) of the Sydney cockle, Anadara trapezia, were exposed to natural or organically enriched sediments. Results demonstrate that larger body sizes have higher tolerance to enriched conditions and can reduce survival of smaller cockles when grown together. Also, large A. trapezia influenced sediment organic matter breakdown although a direct link to bioturbation activity was not clear. Overall, this study found that intraspecific variation in body size influences survival and performance of bioturbators in eutrophic scenarios.

Bacterial cell wall-degrading enzymes induce basidiomycete natural product biosynthesis.

Natural products play a vital role for intermicrobial interactions. In the basidiomycete arena an important representative is variegatic acid, a lactone natural product pigment whose ecological relevance stems from both inhibiting bacterial swarming and from indirect participation in breakdown of organic matter by brown-rotting fungi. Previous work showed that the presence of bacteria stimulates variegatic acid production. However, the actual external molecular trigger that prompts its biosynthesis in the mushroom hyphae remained unknown. Here, we report on the identification of Bacillus subtilis subtilisin E (AprE) and chitosanase (Csn) as primary inducers of pulvinic acid pigment formation. Using the established co-culture system of B. subtilis and Serpula lacrymans, we used activity-guided FPLC-based fractionation of B. subtilis culture supernatants and subsequent peptide fingerprinting to identify candidates, and their role was corroborated by means of a pigment production assay using heterologously produced chitosanase and subtilisin. B. subtilis mutants defective in either the aprE or the csn gene still triggered pigmentation, yet to a lower degree, which points to a multicausal scenario and suggests the combined activity of these cell wall polymer-attacking enzymes as true stimulus.