The Brazilian North Coast (BNC) encompasses the intersection of multiple oceanographic features such as strong currents, a large continental shelf under the influence of the Amazon River freshwater and sediment outflow, extensive muddy and sand bottom, as well as a mesophotic reef system. As a result, the BNC hosts a diverse fish fauna, consisting of estuarine and freshwater species, including species endemic to the region. These fish species are distributed across a mosaic of megahabitats within the region. Here, we present the first comprehensive effort to understand the distribution patterns of ray-finned fishes and cartilaginous fishes among these different megahabitats. On 1891 samples, we recorded 616 species from 147 families distributed across five distinct megahabitats. The Continental Slope megahabitat had the highest number of families and consisted primarily of pelagic species, indicating its close association with the open sea. The Sand and Mud megahabitats exhibited high species richness and shared similar generalist fish families in terms of habitat use. The Amazon Plume megahabitat was characterized by freshwater and marine euryhaline species, emphasizing the influence of the Amazon River on the BNC's ecological dynamics. The Reef megahabitat had species closely associated with consolidated substrates and shared many species with the Sand megahabitat. This study offers valuable insights into fish species distribution and composition in the BNC, contributing to biodiversity assessments and conservation efforts in the region.
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