Precise measurement of Higgs boson couplings is an important task for International Linear Collider (ILC) experiments and will facilitate the understanding of the particle mass generation mechanism. In this study, the measurement accuracies of the Higgs boson branching fractions to the $b$ and $c$ quarks and gluons, $\Delta Br(H\to b\bar{b},\sim c\bar{c},\sim gg)/Br$, were evaluated with the full International Large Detector model (\texttt{ILD\_00}) for the Higgs mass of 120 GeV at the center-of-mass (CM) energies of 250 and 350 GeV using neutrino, hadronic and leptonic channels and assuming an integrated luminosity of $250 {\rm fb^{-1}}$, and an electron (positron) beam polarization of -80% (+30%). We obtained the following measurement accuracies of the Higgs cross section times branching fraction ($\Delta (\sigma \cdot Br)/\sigma \cdot Br$) for decay of the Higgs into $b\bar{b}$, $c\bar{c}$, and $gg$; as 1.0%, 6.9%, and 8.5% at a CM energy of 250 GeV and 1.0%, 6.2%, and 7.3% at 350 GeV, respectively. After the measurement accuracy of the cross section ($\Delta\sigma/\sigma$) was corrected using the results of studies at 250 GeV and their extrapolation to 350 GeV, the derived measurement accuracies of the branching fractions ($\Delta Br/Br$) to $b\bar{b}$, $c\bar{c}$, and gg were 2.7%, 7.3%, and 8.9% at a CM energy of 250 GeV and 3.6%, 7.2%, and 8.1% at 350 GeV, respectively.
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