Boundary effects play an interesting role in finite-size physical systems. In this work, we study the boundary-induced properties of 1+1-dimensional critical systems driven by inhomogeneous Möbius-like quenches. We focus on the entanglement entropy in BCFTs with a large central charge and a sparse spectrum of low-dimensional operators. We find that the choice of boundary conditions leads to different scenarios of dynamical phase transitions. We also derive these results in a holographic description in terms of intersecting branes in AdS3, and find a precise match.