Body Depth Research Articles

Using shear wave elasticity in normal terminal ileum of a healthy southwest Chinese population: a pilot study of reference elasticity ranges.

Elastography has not been widely applied to the gastrointestinal tract. The bowel wall's normal elasticity values are still unknown and are necessary for studies of gastrointestinal diseases. This study explores the feasibility of using shear wave elastography (SWE) to measure the terminal ileum wall stiffness in healthy subjects and establish the corresponding normal ranges of elasticity values. This observational study recruited 139 healthy adult volunteers from April to July 2020. All examinations were performed in the anterior terminal ileum wall. Shear wave velocity (SWV) and Young's modulus (E) values were measured in the midline on longitudinal sections and replicated different operators' obtained data. Also, bowel wall thickness (BWT) and depth were recorded. Subgroups were classified according to the volunteers' gender, age, body mass index (BMI), BWT, and depth. The intra-class correlation coefficient was calculated to analyze inter- and intra-operator consistency, and independent t-tests and one-way analysis of variance were used to explore the differences in variables. The inter- and intra-operator agreements were good to excellent by different operators and in the replicated measurements (intra-operator consistency: 0.963; inter-operator consistency: 0.842). In all volunteers, the mean SWV was 1.08±0.25 m/s, the mean E value was 3.84±1.84 kPa, and the median BWT was 2 mm. SWV and E did not show significant differences according to gender (P=0.589), age (P=0.738), BMI (P=0.678), depth (P=0.375), or BWT (P=0.410). BWT did not show significant differences according to age (P=0.142), BMI (P=0.863), or depth (P=0.368). SWE can be used in terminal ileum wall stiffness measurements with good reliability, and the SWE values do not appear to vary significantly according to different physiological factors. The corresponding elasticity ranges of the terminal ileum in normal adults were acquired.

Evidence on Otolith Structure and some Ecological Features of Three Small Foraging Species along the Southern Black Sea Coast

In this study, we aimed to describe otoliths to provide information about the stomach contents of three small foraging species and to contribute to the currently limited biological and ecological evidence about the species. Seasonal experimental bottom trawl surveys were conducted along the shelf areas of the Kızılırmak-Yeşilırmak and Melet Rivers to collect investigation materials which were abundant in the bycatch composition of the target catch. The information about body size measurements, abundance values, depth, season, and locality of samplings was recorded for further evaluations. Otolith shapes were defined as discoidal to ovate for the Aphia minuta, discoidal for the Pomatoschistus marmoratus, and square for the Arnoglossus kessleri. The mean length and weight values of the Aphia minuta, which was abundant along shallow coastal waters (0-30 m), were significantly different between localities and sampling season, but no difference was found between depth ranges. Pomatoschistus marmoratus, whose distribution varied significantly between depths and seasons had dense distributions along with the depth range of 30-60 m. Arnoglossus kessleri was most abundant along with the depth range of 0-30 m and had no samples in depths of over 60 m. It was found that the mean values of length and weight of this species were only significantly different among seasons but similar over the depth ranges and localities.

Interaction Between the Intestinal Microbial Community and Transcriptome Profile in Common Carp (Cyprinus carpio L.).

In a previous study, we found that the growth performance of the new strain of Huanghe carp is related to gene expression and bacterial community in the gut. In order to better understand the relationship between the gene expression level and bacterial abundance in the gut, we studied the growth performance, gut bacterial structure, and transcriptome profile in the 4th generation of the new carp strain (selection group) at harvesting time, and compared them with the control line (traditional Huanghe carp). Body weight, depth, width, and length increased 14.58, 7.14, 5.04, and 5.07%, respectively. The gut microbiome of the selection group also exhibited significantly higher species diversity parameters (Shannon, Simpson, and chao1). Both PCA and phylogenetic analyses divided all gut samples into two parts: control and selection group. Aeromonas was the dominant taxon in the control group, followed by Firmicutes and Roseomonas; in the selection group, Roseomonas was the dominant taxon, followed by Firmicutes and then Aeromonas. Among the 249 significantly differentially expressed genes, 194 were downregulated and 55 were upregulated. Functional GO annotation produced 13 terms in the biological process, 8 in the cellular component, and 7 in the molecular function categories. KEGG annotation indicated that most of these genes were associated with the immune-related pathways. A total of 2,892 pairs of genes (245) and baceterial genera (256) were analyzed using Pearson’s correlation analysis. Most of the identified associations were mapped to the immune system, bacterial community, and cell differentiation categories. The top-10 bacterial genera identified by these analyses were Methylocystis, Ohtaekwangia, Roseomonas, Shewanella, Lutispora, GpVI, Desulfovibrio, Candidatus_Berkiella, Bordetella, and Azorhizobium. Genes paired with bacteria flora were divided into four functional categories: immune, growth, adipocyte differentiation, and nerve regulation. These genes may be related to the comparatively fast growth and high muscle polyunsaturated fatty acid content of the Huanghe carp new strain. Meanwhile, nerve regulation-related genes may be a reflection of the microbiota-gut-brain axis. These results illustrate that gut bacterial community structure is associated with the growth performance and gene expression in the Huanghe carp new strain.

Evaluation of the image quality and dose reduction in digital radiography with an advanced spatial noise reduction algorithm in pediatric patients.

To evaluate whether the advanced spatial noise reduction (ASNR) algorithm installed in a digital radiography system generates acceptable images at a lower dose than a conventional denoising algorithm in pediatric patients. Nine sets of 30 images of pediatric patients, classified under three protocols and three age groups, were retrospectively selected. Different levels of low-dose image sets of these 270 images were generated by a noise simulation tool after validation testing using phantoms. Each image set was obtained with both the ASNR and conventional algorithm, and grouped randomly and blinded. Three experienced pediatric radiologists were asked to pick the "image with optimum dose" among images of different dose levels with an ALARA (as low as reasonably achievable) perspective. Dose reduction rates for each protocol and age group were calculated, and entrance skin exposure (ESE) was calculated using the values of kVp and mAs, assuming a standard body depth for each age group. With the ASNR algorithm, estimated dose reduction rates were highest for abdominal radiographs (45.0%, 27.3%, and 24.3% in infants, children, and adolescents, respectively, p < 0.001). The mean dose reductions for all age groups in the abdominal, chest, and skull radiographs were 32.8%, 12.9%, and 23.2%, respectively (p < 0.001). Average of the calculated ESE was lower with the ASNR algorithm than with the conventional algorithm group (p < 0.001). The ASNR algorithm facilitated optimization of image quality with a higher reduction in radiation dose than the conventional algorithm, making it more acceptable for use in pediatric patients. •ASNR algorithm in DR system improves image quality via enhanced contrast and noise removal by estimating actual noise distribution based on a multi-scale noise covariance and frequency processing. •Noise simulation tool (NST) generating images of different dose levels can be used for evaluation of the optimum dose without unnecessary additional radiation exposure to pediatric patients. •Retrospective clinical study using NST showed that the ASNR algorithm enabled a higher reduction in radiation dose than the conventional algorithm in pediatric patients.

Researching 100 t cows: An innovative approach to identify intrinsic cows factors associated with a high lifetime milk production

Longevity is an important trait both from an economic and social perspective. Modern dairy cows are criticized for their short productive lifespan: only a minority of animals survives to a fourth lactation, implying that most cows are culled before reaching their maximal potential. In contrast, the population of 100 t cows (HT), reaching the threshold of 100,000 kg lifetime milk yield, is growing rapidly. As these cows combine a long lifespan with high functionality, a better understanding of their intrinsic characteristics might help us to improve the overall lifespan and lifetime production in dairy cows. The aim of the present research was to compare HT with their less-producing herd mates in order to identify intrinsic cow factors associated with longevity and high lifetime production. Therefore, we matched 26,248 HT with 691,597 herd mates, born in the same year in the same herd. Data were provided by Coöperatie rundveeverbetering (CRV) and contained birth dates, calving dates, milk yield and dam information. In addition, scores for conformation traits based on classifications in the first lactation and breeding values (for milk yield, fertility, udder health and claw health) were provided. Multivariable conditional logistic regression models were built to identify factors associated with reaching a lifetime milk yield of 100,000 kg. Results revealed cows born in September and born out of heifers to have the highest odds to become a HT. When cows received a score ≥ 83 (population average 80) for udder and feet & legs conformation, they had higher odds of reaching the 100,000 kg threshold. While a greater body condition and larger rump angle increased the odds of becoming a HT, this was decreased in cows with a large body depth. Finally, breeding values for milk yield, fertility, udder health and claw health were positively associated with the likelihood of reaching a lifetime milk yield of 100,000 kg. In conclusion, to increase lifetime milk yield in dairy herds, farmers should select heifers with high scores for conformation traits like udder and feet & legs and high breeding values for milk yield, fertility and udder health. Furthermore, our data suggest that being born in September out of a heifer potentially contributes to reaching a high lifetime milk yield.

Did I Hit the Door? Effects of Self-Avatars and Calibration in a Person-Plus-Virtual-Object System on Perceived Frontal Passability in VR.

The availability of new and improved display, tracking and input devices for Virtual Reality experiences has facilitated the use of partial and full body self-avatars in interaction with virtual objects in the environment. However, scaling the avatar to match the user's body dimensions remains to be a cumbersome process. Moreover, the effect of body-scaled self-avatars on size perception of virtual handheld objects and related action capabilities has been relatively unexplored. To this end, we present an empirical evaluation investigating the effect of the presence or absence of body-scaled self-avatars and visuo-motor calibration on frontal passability affordance judgments when interacting with virtual handheld objects. The self-avatar's dimensions were scaled to match the participant's eyeheight, arms length, shoulder width and body depth along the mid section. The results indicate that the presence of body-scaled self-avatars produce more realistic judgments of passability and aid the calibration process when interacting with virtual objects. Also, participants rely on the visual size of virtual objects to make judgments even though the kinesthetic and proprioceptive feedback of the object is missing or mismatched.

Morphometric and physical characteristics distinguishing adult Patagonian lamprey, Geotria macrostoma from the pouched lamprey, Geotria australis.

The pouched lamprey, Geotria australis Gray, 1851, has long been considered monotypic in the Geotriidae family with a wide southern temperate distribution across Australasia and South America. Recent studies have provided molecular and morphological evidence for a second Geotria species in South America; Geotria macrostoma (Burmeister, 1868). The aim of this study was to determine morphometric and physical characteristics of adult G. macrostoma that further differentiate this re-instated species of Geotriidae from G. australis. The diagnostic features discriminating immature adult G. macrostoma from G. australis when entering fresh water, are distinct differences in dentition, oral papillae and fimbriae counts and differences in coloration. In addition, G. macrostoma display greater growth of the prebranchial region and oral disc and has a deeper body depth and higher condition factor. All current ecological knowledge of the genus Geotria is based on Australasian populations, which may not be applicable to G. macrostoma. To ensure the conservation and protection of the Patagonian lamprey as a re-identified species, further investigations are needed to understand its life history, biology and ecology throughout its range.

Economic evaluation of rock oil project based on AHP algorithm

In order to reveal the characteristics of oil shale, the distribution of oil shale and the potential of resources in Jianchang Basin. The selection evaluation model and index system of oil shale development are established in this process. The weight of each layer evaluation index is determined, and a unified scoring system is established to obtain the index value. The weighted summation obtains the comprehensive score of each target area. The results show that the most important factors affecting the assessment of oil shale development are the geological and resource conditions of oil shale ore spots and the key parameters are oil shale oil content, ore body depth, and shale oil resources. By using AHP to evaluate 5 oil shale exploration areas in Jianchang Basin, it can be determined that Daqingshan and Chaoyang Qidaoquanzi exploration areas in Aohan Banner have the highest score, the best exploration prospect, the stable profitability, and the strong profitability of the project. Strong ability to resist risks.

A new arrowtooth eel of genus emMeadia/em (Synaphobranchidae: Ilyophinae) from Vietnam, South China Sea.

Meadia minor sp. nov., a scaless ilyophine eel, is described on the basis of 10 specimens collected from off Quy Nhon, central coast of Vietnam. It can be distinguished from its congeners in having a relatively long trunk (21.3-25.0% TL) which is longer than head length; a short and blunt snout (21.4-23.7% HL); gill opening close to pectoral-fin base; interbranchial space broad (20.7-26.2% HL); dorsal-fin origin above posterior third of pectoral fin; body depth 24-28 times in TL; total vertebrae 118-122; mean vertebral formula 7-33-121; and a small body size, reaching 330 mm TL. The generic status of the new species is discussed. Short descriptions of two congeners are provided.

Indirect predator effects influence behaviour but not morphology of juvenile coral reef Ambon damselfish Pomacentrus amboinensis.

A 6-week laboratory experiment exposed juvenile Ambon damselfish Pomacentrus amboinensis to visual and chemical cues of either a predator, a herbivore or a null control (sea water) and found no effect of predator cues on prey morphology (proportion of ocellus to eye diameter, body depth, standard length and fin area). Nonetheless, behaviour was significantly affected by predator presence, with prey less active and taking half as many feeding strikes when exposed to predators compared to fish from the null control. The presence of a herbivore also affected prey behaviour similar to that of the predator, suggesting that the presence of a non-predator may have important effects on development.

Two new annual fishes (Cyprinodontiformes: Rivulidae) unexpectedly discovered in the highlands of southern Brazil.

Two new species of Austrolebias are described based on specimens collected from temporary pools located in natural grassland landscape within the Araucaria Forest domain at exceptionally high altitudes (~1000 meters a.s.l.). Austrolebias botocudo sp. n. and Austrolebias nubium sp. n. occur, respectively, in drainages of upper rio Apuaê-Inhandava (upper rio Uruguay basin) and upper rio Taquari-Antas (upper rio Jacuí, Laguna dos Patos basin), in the Meridional Plateau of southern Brazil. Despite an intensive survey conducted in the area, only two populations of each species were recorded. Both new species occurs at altitudes that are among the higher recorded for species of the genus, and both are assigned to the subgenus Acrolebias. The new species described herein are easily distinguished for its congeners by the colour pattern of males, by presence of melanophores irregularly distributed in different parts of the body, contact organs cover the body and anal fins, position of fins related with vertebrae, by preopercular and mandibular series of neuromasts united, by a series of morphometric features and by larger maximum standard length. Austrolebias botocudo and A. nubium are distinguished from each other by colour pattern of males, length of contact organs in the flank and number of contact organs in scales of lateral line, dorsal profile of head, number of neuromasts in the preopercular + mandibular series, body depth in females, and by basihyal cartilage length. Additionally, we discuss the conservation status of the new species, and provided an identification key for the species of the subgenus Acrolebias.

Prediction of genetic merit for live weight and body condition score in dairy cows using routinely available linear type and carcass data

Accurate estimates of genetic merit for both live weight and body condition score (BCS) could be useful additions to both national- and herd-breeding programs. Although recording live weight and BCS is not technologically arduous, data available for use in routine genetic evaluations are generally lacking. The objective of the present study was to explore the usefulness of routinely recorded data, namely linear type traits (which also included BCS but only assessed visually) and carcass traits in the pursuit of genetic evaluations for both live weight and BCS in dairy cows. The data consisted of on-farm records of live weight and BCS (assessed using both visual and tactile cues) from 33,242 dairy cows in 201 commercial Irish herds. These data were complemented with information on 6 body-related linear type traits (i.e., stature, angularity, chest width, body depth, BCS, and rump width) and 3 cull cow carcass measures (i.e., carcass weight, conformation, and fat cover) on a selection of these animals plus close relatives. (Co)variance components were estimated using animal linear mixed models. The genetic correlation between the type traits stature, angularity, body depth, chest width, rump width, and visually-assessed BCS with live weight was 0.68, -0.28, 0.43, 0.64, 0.61, and 0.44, respectively. The genetic correlation between angularity and BCS measured on farm (based on both visual and tactile appraisal) was -0.79; the genetic and phenotypic correlation between BCS assessed visually as part of the linear assessment with BCS assessed by producers using both tactile and visual cues was 0.90 and 0.27, respectively. The genetic (phenotypic) correlation between cull cow carcass weight and live weight was 0.81 (0.21), and the genetic (phenotypic) correlation between cull cow carcass fat cover and BCS assessed on live cows was 0.44 (0.12). Estimated breeding values (EBV) for live weight and BCS in a validation population of cows were generated using a multitrait evaluation with observations for just the type traits, just the carcass traits, and both the type traits and carcass traits; the EBV were compared with the respective live weight and BCS phenotypic observations. The regression of phenotypic live weight on its EBV from the multitrait evaluations was 1.00 (i.e., the expectation) when the EBV was generated using just linear type trait data, but less than 1 (0.83) when using just carcass data. However, the regression changed across parities and stages of lactation. The partial correlation (after adjusting for contemporary group, parity by stage of lactation, heterosis, and recombination loss) between phenotypic live weight and EBV for live weight estimated using the 3 different scenarios (i.e., type only, carcass only, type plus carcass) ranged from 0.38 to 0.43. Although the prediction of phenotypic BCS from its respective EBV was relatively good when using just the linear type trait data (regression coefficient of 0.83 with a partial correlation of 0.22), the predictive ability of BCS EBV based on just carcass data was poor and should not be used. Overall, linear type trait data are a useful source of information to predict live weight and BCS with minimal additional predictive value from also including carcass data. Nonetheless, in the absence of linear type trait data, information on carcass traits can be useful in predicting genetic merit for mature cow live weight. Prediction of cow BCS from cow carcass data is not recommended.

Developmental morphology and growth in early stages of laboratory-reared Cirrhinus molitorella and C. microlepis (Cypriniformes: Cyprinidae)

The morphological developments in laboratory-reared larval and juvenile Cirrhinus molitorella and larval C. microlepis were described, and ontogenies (including yolk sizes and absorptions, fin-ray and myomere numbers, allometric changes in the snout, upper jaw, head and pre-anal lengths, maximum body depth, eye diameter and melanophore distributions) were compared. Body lengths (BL) just after hatching were smaller in C. molitorella [3.3 ± 0.1 (mean ± SD) mm] than in C. microlepis (4.4 ± 0.1 mm), and subsequent increase in body lengths were slower in C. molitorella than in C. microlepis. Yolk sizes just after hatching were correspondingly smaller in C. molitorella than in C. microlepis and the yolks were completely absorbed by ca. 95 hours after hatching in the former and ca. 118 hours in the latter. In C. molitorella, fin-rays started appearing at a smaller size than in C. microlepis, with full complements attained by 14.4 mm BL (day 35) in the former, while they did not attain by 16.4 mm BL (day 20) in the latter. Allometric changes started in smaller sizes in C. molitorella than in C. microlepis. Total myomeres were 38–41 in C. molitorella and 39–43 in C. microlepis. Melanophore distributions progressed similarly in both species, except for a darker deposition on the caudal peduncle of C. molitorella of ca. 7–10 mm BL. Larvae of these species were identifiable mainly by differences in fin-ray numbers and allometries by size.

First genomic prediction and genome-wide association for complex growth-related traits in Rock Bream (Oplegnathus fasciatus).

Rock Bream (Oplegnathus fasciatus) is an important aquaculture species for offshore cage aquaculture and fish stocking of marine ranching in East Asia. Genomic selection has the potential to expedite genetic gain for the key target traits of a breeding program, but has not yet been evaluated in Oplegnathus. The purposes of the present study were to explore the performance of genomic selection to improve breeding value accuracy through real data analyses using six statistical models and to carry out genome‐wide association studies (GWAS) to dissect the genetic architecture of economically vital growth‐related traits (body weight, total length, and body depth) in the O. fasciatus population. After quality control, genotypes for 16,162 SNPs were acquired for 455 fish. Heritability was estimated to be moderate for the three traits (0.38 for BW, 0.33 for TL, and 0.24 for BD), and results of GWAS indicated that the underlying genetic architecture was polygenic. Six statistic models (GBLUP, BayesA, BayesB, BayesC, Bayesian Ridge‐Regression, and Bayesian LASSO) showed similar performance for the predictability of genomic estimated breeding value (GEBV). The low SNP density (around 1 K selected SNP based on GWAS) is sufficient for accurate prediction on the breeding value for the three growth‐related traits in the current studied population, which will provide a good compromise between genotyping costs and predictability in such standard breeding populations advanced. These consequences illustrate that the employment of genomic selection in O. fasciatus breeding could provide advantages for the selection of breeding candidates to facilitate complex economic growth traits.

Embryonic and larval development in the freshwater angelfish &lt;em&gt;(Pterophyllum scalare)&lt;/em&gt;

The freshwater angelfish, Pterophyllum scalare like many other cichlids show parental care of embryos and larvae. This study was carried out to investigate the embryonic development of P. scalare, which shows biparental care and substrate brooding. During the study adult reproductive behavior and parental care was observed. Once the eggs were fertilized upon spawning, the early and later embryonic stages were observed, documented and various embryo length measurements were analyzed to characterize the developmental pattern in this species. Whole mounts and bone and cartilage measurements of acid free double stained larvae were analyzed to further understand the developmental rates in the hatched larvae. The developmental events were compared with those of other documented cichlid species as well as with the zebrafish, Danio rerio (Family Cyprinidae), which does not show parental care. After fertilization, cleavage division of the P. scalare embryo starts 1.30 hours post fertilization (hpf). On average, cleavage, blastula, gastrula, segmentation and pharyngula periods of embryogenesis are observed for approximately 3 ½, 11 ½, 9 ½, 36 and 12 hours respectively. Ultimately, P. scalare embryos hatched around 72 (hpf). Head Length, dorsal, caudal and anal fins show positive allometric growth while body depth and digestive tract show almost isometric growth. The study highlights that similar to a few other studied cichlids, P. scalare embryogenesis and larval development occur at a slower rate of development compared to D. rerio. In cichlids including P. scalare, parental care may allow these embryos the luxury of developing at a slower rate whereas the lack thereof for D. rerio embryos may necessitate faster development.

Effects of wave-driven water flow on the fast-start escape response of juvenile coral reef damselfishes.

Fish often evade predators with a fast-start escape response. Studies typically examine this behaviour in still water despite water motion being an inherent feature of aquatic ecosystems. In shallow habitats, waves create complex flows that likely influence escape performance, particularly in small fishes with low absolute swimming speeds relative to environmental flows. I examined how wave-driven water flow affects the behaviour and kinematics of escape responses in juveniles of three coral reef damselfishes (Pomacentridae) with different body morphologies. Tropical damselfishes have similar fin and body shapes during early development, with the exception of body depth, a trait deemed important for postural control and stability. Wave-driven flow increased response latency in two of the three species tested: fish with a fusiform body responded 2.9 times slower in wave-driven flow than in still water, whereas this difference was less pronounced in fish with an intermediate body depth (1.9 times slower response) and absent in fish with a laterally compressed body. The effect of wave-driven flow on swimming performance (cumulative escape distance and turning rate) was variable and depended on the timing and trajectory of escape responses in relation to the wave phase. Given intense predation pressure on juvenile coral reef fishes during settlement, interspecific differences in how wave-driven flow affects their ability to escape predators could influence the distribution and abundance of species across spatial and temporal scales.

The crucian carp biological characteristics in the ichthyofauna of Belgorod water storage reservoir

The authors carried out a comprehensive study of crucian carp population in the initial spawning period in the ichthyofauna of the Belgorod water storage reservoir, located on the territory of two regions with different ecological situations and anthropogenic load, with the third class of water quality (moderately polluted) in terms of hydrobiological and hydrochemical indicators. It was found that in terms of such linear-dimensional indicators as total body length, body length from the snout to the end of the scale covering, head length, length of the trunk, body depth and girth, crucian carps were characterized as normally developed. At the same time, there was a prevalence of juvenile animals in the catch over the old ones, females over males with their normal ratio, with well-developed reproductive products (hard roe and milt), immune organs (gills, liver, spleen), fatness corresponding to the standard, high yield of carcasses, with no evidence of any diseases during visual morpho-pathological examination, which indicated a favorable habitat for the crucian carp.

Revision of the resurrected deepwater scorpionfish genus Lythrichthys Jordan and Starks 1904 (Setarchidae), with descriptions of two new species

Lythrichthys Jordan and Starks 1904 (Setarchidae), previously regarded as a junior synonym of Setarches Johnson 1862, is recognized as valid, despite sharing some diagnostic characters with the latter, both genera differing from others in the family in having III, 4–6 (usually 5) anal-fin rays, the body depth at the pelvic-fin origin and interorbital width at the vertical midline of the eye 29.1–42.9% and 7.4–12.9% of standard length, respectively, snout, dorsal and ventral surface of the head naked, first lacrimal spine well developed and of similar length to the second and third spines, intestine and pyloric caeca black or grey, and swimbladder well developed. Lythrichthys differs from Setarches in having the second preopercular spine short or rudimentary (vs. well developed, of similar length to the first and third spines in Setarches), the thoracic and abdominal scales embedded (vs. exposed), the tip of the first lacrimal spine reaching the upper lip (vs. not reaching, except in juveniles), and 9 abdominal vertebrae (vs. 10). In addition, examination of all nominal species included in Setarchidae showed that five were best placed in Lythrichthys, viz. Lythrichthys longimanus (Alcock 1894), Lythrichthys eulabes Jordan and Starks 1904, Lythrichthys cypho (Fowler 1938), Lythrichthys dentatus sp. nov. and Lythrichthys grahami sp. nov., with Setarches including only Setarches guentheri Johnson 1862.

Accounting for Genetic Differences Among Unknown Parents in Bubalus bubalis: A Case Study From the Italian Mediterranean Buffalo.

The use of genetic evaluations in the Water Buffalo by means of a Best Linear Unbiased Prediction (BLUP) animal model has been increased over the last two-decades across several countries. However, natural mating is still a common reproductive strategy that can increase the proportion of missing pedigree information. The inclusion of genetic groups in variance component (VC) and breeding value (EBV) estimation is a possible solution. The aim of this study was to evaluate two different genetic grouping strategies and their effects on VC and EBV for composite (n = 5) and linear (n = 10) type traits in the Italian Mediterranean Buffalo (IMB) population. Type traits data from 7,714 buffalo cows plus a pedigree file including 18,831 individuals were provided by the Italian National Association of Buffalo Breeders. VCs and EBVs were estimated for each trait fitting a single-trait animal model and using the official DNA-verified pedigree. Successively, EBVs were re-estimated using modified pedigrees with two different proportion of missing genealogies (30 or 60% of buffalo with records), and two different grouping strategies, year of birth (Y30/Y60) or genetic clustering (GC30, GC60). The different set of VCs, estimated EBVs and their standard errors were compared with the results obtained using the original pedigree. Results were also compared in terms of efficiency of selection. Differences among VCs varied according to the trait and the scenario considered. The largest effect was observed for two traits, udder teat and body depth in the GC60 genetic cluster, whose heritability decreased by −0.07 and increased by +0.04, respectively. Considering buffalo cows with record, the average correlation across traits between official EBVs and EBVs from different scenarios was 0.91, 0.88, 0.84, and 0.79 for Y30, CG30, Y60, and CG60, respectively. In bulls the correlations between EBVs ranged from 0.90 for fore udder attachment and udder depth to 0.96 for stature and body length in the GC30 scenario and from 0.75 for udder depth to 0.90 for stature in the GC60 scenario. When a variable proportion of missing pedigree is present using the appropriate strategy to define genetic groups and including them in VC and EBV is a worth-while and low-demanding solution.

Predator community and resource use jointly modulate the inducible defense response in body height of crucian carp.

Phenotypic plasticity can be expressed as changes in body shape in response to environmental variability. Crucian carp (Carassius carassius), a widespread cyprinid, displays remarkable plasticity in body morphology and increases body depth when exposed to cues from predators, suggesting the triggering of an antipredator defense mechanism. However, these morphological changes could also be related to resource use and foraging behavior, as an indirect effect of predator presence. In order to determine whether phenotypic plasticity in crucian carp is driven by a direct or indirect response to predation threat, we compared twelve fish communities inhabiting small lakes in southeast Norway grouped by four categories of predation regimes: no predator fish, or brown trout (Salmo trutta), perch (Perca fluviatilis), or pike (Esox lucius) as main piscivores. We predicted the body shape of crucian carp to be associated with the species composition of predator communities and that the presence of efficient piscivores would result in a deeper body shape. We use stable isotope analyses to test whether this variation in body shape was related to a shift in individual resource use—that is, littoral rather than pelagic resource use would favor the development of a specific body shape—or other environmental characteristics. The results showed that increasingly efficient predator communities induced progressively deeper body shape, larger body size, and lower population densities. Predator maximum gape size and individual trophic position were the best variables explaining crucian carp variation in body depth among predation categories, while littoral resource use did not have a clear effect. The gradient in predation pressure also corresponded to a shift in lake productivity. These results indicate that crucian carp have a fine‐tuned morphological defense mechanism against predation risk, triggered by the combined effect of predator presence and resource availability.