Emissive BODIPY Research Articles

Photoswitchable Fluorescent Dyads Incorporating BODIPY and [1,3]Oxazine Components

We designed and synthesized three compounds incorporating a BODIPY fluorophore and an oxazine photochrome within the same molecular skeleton and differing in the nature of the linker bridging the two functional components. The [1,3]oxazine ring of the photochrome opens in less than 6 ns upon laser excitation in two of the three fluorophore-photochrome dyads. This process generates a 3H-indolium cation with a quantum yield of 0.02-0.05. The photogenerated isomer has a lifetime of 1-3 μs and reverts to the original species with first-order kinetics. Both photochromic systems tolerate hundreds of switching cycles with no sign of degradation. The visible excitation of the dyads is accompanied by the characteristic fluorescence of the BODIPY component. However, the cationic fragment of their photogenerated isomers can accept an electron or energy from the excited fluorophore. As a result, the photoinduced transformation of the photochromic component within each dyad results in the effective quenching of the BODIPY emission. Indeed, the fluorescence of these photoswitchable compounds can be modulated on a microsecond time scale with excellent fatigue resistance under optical control. Thus, our operating principles and choice of functional components can ultimately lead to the development of valuable photoswitchable fluorescent probes for the super-resolution imaging of biological samples.

Near-infrared emissive BODIPY polymeric and copolymeric dyes

Novel near-Infrared emissive BODIPY polymeric dyes (polymers A and B) were prepared by Sonogashira cross-coupling reaction of 2,6-diiodo BODIPY dyes bearing one and two styryl groups at 3,5 positions (5, 6) with 2,6-diethynyl BODIPY dye, respectively. These polymeric dyes (A and B) display absorption maxima at 697 and 738 nm, and emission maxima at 715 and 760 nm, respectively. These polymeric dyes exhibit significant red shifts in absorption and emission maxima due to their extended π-conjugation systems compared with their BODIPY monomeric dyes. The thin films of polymers A and B display further red shift with emission maxima 764 and 810 nm, respectively. Near-infrared BODIPY copolymeric dye (C) was prepared by Sonogashira polymerization of 2,6-diiodo BODIPY dye bearing two styryl groups with 2,5-diethynyl-3-decylthiophene. For comparison in optical properties, deep-red and red emissive BODIPY copolymeric dyes (D and E) were prepared by Sonogashira polymerization of 2,6-diiodo BODIPY dye bearing monostyryl group and 2,6-diiodo BODIPY dye with 2,5-diethynyl-3-decylthiothene, respectively. These polymers display their absorption maxima at 649 nm and 634 nm, and emission maxima at 694 nm and 669 nm, respectively. All the polymers displayed good thermal stability and solubility in dichloromethane, and their lifetimes ranged from 0.7 to 3.4 ns.

Hybrid complexes: Pt(ii)-terpyridine linked to various acetylide-bodipy subunits

By tailoring the chemistry of the 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (bodipy) core in order to change its spectroscopic properties, we linked some modified bodipy dyes to Pt(ii)-terpyridine centers thereby preparing three novel hybrid complexes. In one of such species, two pyrene subunits are also present. The absorption spectra and luminescence properties (both at room temperature in acetonitrile solution and at 77 K in butyronitrile rigid matrix) of the new hybrid complexes and of their bodipy parent species have been investigated, and compared with those of previously studied compounds. Absorption spectra showed that the different chromophoric subunits roughly keep their own features in the multicomponent systems, indicating the supramolecular nature of the compounds. Efficient photoinduced intercomponent energy transfer takes place in the various hybrid Pt(ii)-terpyridine-bodipy compounds, by taking advantage of different mechanisms: at room temperature in fluid solution very efficient energy transfer from the (3)MLCT state(s) of the Pt residue to the lowest-lying (3)bodipy is mediated by a charge transfer state via a two-step electron transfer process. Direct energy transfer from (3)MLCT state(s) to the (3)bodipy states takes place at 77 K, most likely via the Dexter mechanism. When two pyrene fragments are grafted to the boron, cascade energy transfer from the pyrene to the (1)bodipy also occurs by the Förster mechanism. For one of the new compounds, (3)bodipy emission with a maximum at 738 nm is also observed at cryogenic temperature.

Synthesis and Optical Properties of Red and Deep-Red Emissive Polymeric and Copolymeric BODIPY Dyes

Deep-red emissive polymeric BODIPY dyes (polymers A and B), poly(2,6-BODIPY-ethynylene)s, were prepared by palladium-catalyzed Sonogashira polymerization of 2,6-diiodo-functionalized BODIPY monomers with 2,6-diethynyl-functionalized BODIPY monomers. Poly(2,6-BODIPY-ethynylene)s emit in the deep-red region with emission spectral maxima at around 680 nm and exhibit significant red shifts (up to 163 and 172 nm) of both absorption and emission maxima compared with their initial BODIPY dyes due to significant extension of π-conjugation. Red emissive copolymeric BODIPY dyes (polymers C, D, and E) were also prepared by palladium-catalyzed Sonogashira polymerization of a diethynyl-functionalized BODIPY monomer with 9,9-bis(6′-(hexylthio)hexyl)-2,7-diiodo-9H-fluorene, 1,4-diiodo-2,5-didecyloxybenzene, and 2,5-diiodo-3-decylthiophene, respectively. Incorporation of different band gap monomer units into poly(2,6-BODIPY-ethynylene)s resulted in copolymers with a range of emission wavelengths from 641 to 664 nm. The fluorescence lifetimes of these polymers (polymers A−D) are from 2.8 to 3.8 ns except the copolymer with thiophene moieties (polymer E), which displays a much shorter lifetime of 0.23 ns with low fluorescence quantum yield due to efficient intersystem crossing induced by the heavy atom effect of sulfur.

Solid-State Emissive BODIPY Dyes with Bulky Substituents As Spacers

Bright fluorescence of the BODIPY dyes, just like most other fluorophores, is quenched in the solid state due to reabsorption and self-quenching. However, introduction of bulky tert-butyl substituents on the meso-phenyl groups result in more spaced packing in the solid state, resulting in highly luminescent powders and films.

Conformational dynamics in the F/G segment of CYP51 from Mycobacterium tuberculosis monitored by FRET

A cysteine was introduced into the FG-loop (P187C) of CYP51 from Mycobacterium tuberculosis (MT) for selective labeling with BODIPY and fluorescence energy transfer (FRET) analysis. Förster radius for the BODIPY–heme pair was calculated assuming that the distance between the heme and Cys187 in solution corresponds to that in the crystal structure of ligand free MTCYP51. Interaction of MTCYP51 with azole inhibitors ketoconazole and fluconazole or the substrate analog estriol did not influence the fluorescence, but titration with the substrate lanosterol quenched BODIPY emission, the effect being proportional to the portion of substrate bound MTCYP51. The detected changes correspond to ∼10Å decrease in the calculated distance between BODIPY-Cys187 and the heme. The results confirm (1) functional importance of conformational motions in the MTCYP51 F/G segment and (2) applicability of FRET to monitor them in solution.

Ganglioside Partitioning and Aggregation in Phase-Separated Monolayers Characterized by Bodipy GM1 Monomer/Dimer Emission

The distribution of Bodipy GM1 in monolayers of binary and ternary lipid mixtures with coexisting fluid and ordered phases has been examined using a combination of atomic force microscopy and near-field scanning optical microscopy. Monolayers deposited at high (30 mN/m) and low (5 or 10 mN/m) surface pressures were examined and compared to those containing the same concentration of unlabeled ganglioside. Measurements of monomer and dimer Bodipy emission were used to distinguish aggregated from dilute ganglioside levels. For binary DPPC/DOPC monolayers, Bodipy GM1 is distributed throughout both the fluid and ordered phases at low surface pressures, and both labeled and unlabeled gangliosides result in a reduction in the size of ordered DPPC domains at 0.4% and the appearance of small aligned ganglioside-rich domains at 4%. In agreement with earlier studies, GM1 is heterogeneously distributed in small islands in the condensed DPPC domains at high surface pressure. By contrast, Bodipy GM1 causes the disappearance of large DPPC domains at 0.4% and the formation of a new GM1-rich phase at 4%. The addition of both gangliosides leads to a comparable loss of large ordered domains at low surface pressure and the appearance of a new GM1-rich phase at 30 mN/m for ternary lipid mixtures containing cholesterol. The results demonstrate the complexity of GM1 partitioning and illustrate the utility of complementary AFM and high spatial resolution two-color fluorescence experiments for understanding Bodipy GM1 aggregation and distribution.

Molecular interactions in ribose transport: the binding protein module symmetrically associates with the homodimeric membrane transporter.

The Escherichia coli high-affinity ribose transporter is composed of the periplasmic ribose-binding protein (RBP or RbsB), the membrane component (RbsC) and the ATP-binding protein (RbsA). In order to dissect the molecular interactions initiating the transport process, RbsC suppressors for transport-defective rbsB mutations were isolated. These suppressors are localized in two regions of RbsC, which are allele-specific to N- or C-terminal domain mutations of RBP, suggesting that there are two distinct regions of RbsC, each interacting with one of the two domains of RBP. To demonstrate that these two regions provide a homodimeric binding surface for RBP we constructed a dimeric rbsC in which two genes are joined tandemly from head to tail with the addition of a linker. The dimeric RbsC protein is stable and functional in growth and ribose uptake. By exploiting the allele specificity between the domain-specific mutations and their suppressors, we generated all mutation-suppressor combinations in a single rbsB plus the dimeric rbsC genes. Their phenotypes are consistent with the proposal that the binding protein module interacts symmetrically with homodimeric RbsC. The mode of association proposed here for the ribose transport components could be extended to other ABC transporters with similar structural organizations.