Understanding metabolic activities involved in bloom formation during a single-species algal bloom has improved greatly. However, little is known about metabolic activities during a multi-species algal bloom. Here, we investigated protein expression profiles at different bloom stages of a mixed dinoflagellate bloom caused by Karenia mikimotoi and Prorocentrum obtusidens (syn. Prorocentrum donghaiense) using a metaproteomic approach. Our results indicated that both P. obtusidens and K. mikimotoi cells highly expressed proteins associated with essential cellular metabolisms such as cell growth and nutrient acquisition before their respective bloom occurrence. P. obtusidens preferentially enhanced uptake and utilization of ammonium, amino acid and organophosphorus-like phospholipid at the early bloom stage, and expressed highly abundant chloroplast peridinin-chlorophyll a-binding protein at the early and the P. obtusidens-dominated bloom stages, indicating their important roles in preferential occurrence and maintenance of P. obtusidens bloom. While absorption and utilization of nutrients, especially ammonium, urea, cyanate, phospholipid, and nucleotide, as well as endocytosis, in K. mikimotoi cells, were enhanced. Notably, both species increased photosynthesis, energy generation, cell proliferation, cell motility and cell defense before their respective blooms, which were beneficial to dealing with adverse external stresses, enabling them to be more competitive and advantageous in complex environments. Interestingly, diatom groups (Skeletonema, Pseudo-nitzschia, and Thalassiosira) decreased uptake and utilization of ambient nutrients and cell proliferation during the bloom period. This study demonstrates that niche differentiation and functional complementarity among phytoplankton species regulate bloom formation and succession during the mixed bloom.
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