Background: The present study is carried out for the detection of Hepatozoon canis organism from naturally infected dogs in Andhra Pradesh, South India. Methods: A total of 97 dogs blood samples were analyzed by microscopy and conventional PCR and the amplicons of H. canis were sequenced and compared with the sequences deposited at GenBank database. Result: Blood smear examination could detect infection with Hepatozoon canis pathogens in two dogs with 2.06 prevalence, while conventional PCR assay revealed that 9 dogs were positive for H. canis with 9.28 prevalence rate. All the positive samples were further subjected to conventional PCR and amplified 18S rRNA gene of H. canis (737 bp), without any non-specific amplification. DNA sequences of the conventional PCR amplicons were subjected to Boot strap analysis and confirmed as H. canis. Of 97 dogs examined, 8.71% of dogs were infested by ticks and were identified as Rhipicephalus sanguineus. The conventional PCR assay could detect more natural infections of Hepatozoon spp. in dogs emphasizing the need of the assay in epidemiological studies.
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