Blight Resistant Potato Research Articles

Allele Mining in Solanum Germplasm: Cloning and Characterization of RB-Homologous Gene Fragments from Late Blight Resistant Wild Potato Species

The late blight disease can be managed by introduction of resistance (R) genes from the wild Solanum species into the cultivated potato. The R genes are mostly comprised of the nucleotide binding site-leucine rich repeat (NBS-LRR) domains and share nucleotide sequence homology in the crop species. In this study, we used potato R gene-specific primers to amplify homologous genes from wild species. A total of 39 wild species were tested for late blight resistance by challenge inoculation of Phytophthora infestans under controlled conditions. Of these, only 15 species were highly resistant (HR) and these were PCR (polymerase chain reaction) amplified by 53 primers representing 21 R genes of potato. Further, only single, distinct, and reproducible gene fragments were cloned and sequenced. Following sequence processing and analysis, 17 non-redundant sequences of RB-homologous genes were identified with uninterrupted open reading frames (ORFs) and nucleotide sequence homologies to known late blight R genes. Finally, 17 RB-homologous gene fragments amplified by the primers of the RB gene were isolated from 11 wild species. The isolation and characterization of 17 RB-homologous gene fragments from wild potato species may serve as an important genomic resource for the novel gene discovery in late blight resistance breeding programs.

The Potato ERF Transcription Factor StERF3 Negatively Regulates Resistance to Phytophthora infestans and Salt Tolerance in Potato.

Ethylene response factors (ERFs) are unique to the plant kingdom and play crucial roles in plant response to various biotic and abiotic stresses. We show here that a potato StERF3, which contains an ERF-associated amphiphilic repression (EAR) motif in its C-terminal region, negatively regulates resistance to Phytophthora infestans and salt tolerance in potato. The StERF3 promoter responds to induction by salicylic acid, ABA ethylene and NaCl, as well as P. infestans, the causal agent of potato late blight disease. StERF3 could bind to the GCC box element of the HIS3 promoter and activate transcription of HIS3 in yeast cells. Importantly, silencing of StERF3 in potato produced an enhanced foliage resistance to P. infestans and elevated plant tolerance to NaCl stress accompanied by the activation of defense-related genes (PR1, NPR1 and WRKY1). In contrast, StERF3-overexpressing plants showed reduced expression of these defense-related genes and enhanced susceptibility to P. infestans, suggesting that StERF3 functions as a negative regulator of downstream defense- and/or stress-related genes in potato. StERF3 is localized to the nucleus. Interestingly, yeast two-hybrid assay and a bimolecular fluorescence complementation (BiFC) test clarified that StERF3 could interact with other proteins in the cytoplasm which may lead to its re-localization between the nucleus and cytoplasm, revealing a novel means of StERF3 regulation. Taken together, these data provide new insights into the mechanism underlying how StERF3 negatively regulates late blight resistance and abiotic tolerance in potato and may have a potential use in engineering late blight resistance in potato.

Review article: Complexity of late blight resistance in potato and its potential in cultivar improvement

Late blight disease caused by Phytophthora infestans is one of the most destructive diseases of potato. In the host an arsenal of genes may contribute to the resistance against the pathogen. In the presently available cultivars besides the so called field resistance which is conditioned by an unknown number of minor genes, race specific resistance genes were introgressed. Recently, broad spectrum resistance genes were identified, isolated and incorporated in breeding programs. The inbreeding depression that is characteristic for potato and the different sexual crossability problems associated with the potential resistance gene sources further complicate the development of cultivars with durable late blight resistance. The task to produce genotypes with resistance is challenged also by the recent occurrence of rapidly changing genotypes of the pathogen which are able to reproduce also sexually nowadays worldwide. Due to its importance, the genetic background of late blight resistance is intensively studied. The growing number of isolated major resistance genes and other genes involved in resistance response, as well as the identified QTLs allow the development of molecular tools which may be effectively used in breeding. In this review the complex status of resistance in potato to P. infestans and the breeding aspects of it is discussed.

Fear and food security

Fear and food security

Effect of Potato Virus S Infection on Late Blight Resistance in Potato

Late blight, caused by Phytophthora infestans , is a destructive disease of potato. Defender is the only cultivar in the U.S. with foliar and tuber resistance to this disease. However, this cultivar exhibits susceptibility to infection by Potato virus S (PVS) and severe symptoms appeared on leaves after infection with PVS. PVS is widespread in potato fields in the U.S. To investigate potential interactions between P. infestans and PVS, detached leaves of Defender and Ranger Russet (susceptible to late blight), that were either PVS-infected or non-infected, were inoculated with P. infestans BF-05. The amount of sporulation and the extent of lesion expansion on inoculated leaves were measured to estimate late blight severity. When inoculated with P. infestans only, as expected, Defender exhibited discrete, relatively small, dark purple to black hypersensitive reaction-like spots and on an average had twenty times fewer sporangia compared to Ranger Russet. However, in Defender plants infected with PVS, lesion expansion and sporulation increased significantly compared to PVS-free Defender. The increased severity of late blight in PVS-infected Defender suggests that PVS negatively impacts late blight resistance in this cultivar. This study demonstrates that late blight resistance in cultivars to be released should be screened for PVS susceptibility.

Effects of Early and Late Harvest on Agronomic Performance and Stability of Late Blight Resistant (R-gene Free) Potato Genotypes

Late blight is an important constraint to potato production and genotype resistance is an effective disease control mesure. Ten late blight resistant potato genotypes (R-gene free) were assessed for yield performance and stability at early (90 days) and late harvest (120 days) at two locations in Kenya during two years. Significant differences (P ≤ 0.05) in area under disease progress curves (AUDPC) were detected among potato genotypes. Resistant genotypes free of R-genes had significantly (P ≤ 0.05) higher yield at late than early harvest, perhaps due to increased tuber bulking period. The rank of genotypes for AUDPC, late blight resistance, and tuber yield varied across seasons and locations (environment). Additive main effects and multiplicative interaction (AMMI) analysis of tuber yield and late blight resistance resulted in significant (P ≤ 0.05) effects of genotypes (G) and environments (E). The proportion of genotypic variance was larger than the environmental variance and the G × E interactions. For tuber yield, the G, E, and G × E interactions accounted for 42.9, 39.6 and 17.5%; and 53.4, 29.7, and 16.9% at early and late harvests, respectively. For AUDPC, G, E, and G × E accounted for 80.2, 5.0, and 14.8%; as well as 82.3, 4.6, and 13% for early and late harvests, respectively. The resistance of potato genotypes without R-genes varied. Selective deployment of resistant genotypes can improve potato tuber yield.

Development of late blight resistant potatoes by cisgene stacking.

BackgroundPhytophthora infestans, causing late blight in potato, remains one of the most devastating pathogens in potato production and late blight resistance is a top priority in potato breeding. The introduction of multiple resistance (R) genes with different spectra from crossable species into potato varieties is required. Cisgenesis is a promising approach that introduces native genes from the crops own gene pool using GM technology, thereby retaining favourable characteristics of established varieties.ResultsWe pursued a cisgenesis approach to introduce two broad spectrum potato late blight R genes, Rpi-sto1 and Rpi-vnt1.1 from the crossable species Solanum stoloniferum and Solanum venturii, respectively, into three different potato varieties. First, single R gene-containing transgenic plants were produced for all varieties to be used as references for the resistance levels and spectra to be expected in the respective genetic backgrounds. Next, a construct containing both cisgenic late blight R genes (Rpi-vnt1.1 and Rpi-sto1), but lacking the bacterial kanamycin resistance selection marker (NPTII) was transformed to the three selected potato varieties using Agrobacterium-mediated transformation. Gene transfer events were selected by PCR among regenerated shoots. Through further analyses involving morphological evaluations in the greenhouse, responsiveness to Avr genes and late blight resistance in detached leaf assays, the selection was narrowed down to eight independent events. These cisgenic events were selected because they showed broad spectrum late blight resistance due to the activity of both introduced R genes. The marker-free transformation was compared to kanamycin resistance assisted transformation in terms of T-DNA and vector backbone integration frequency. Also, differences in regeneration time and genotype dependency were evaluated.ConclusionsWe developed a marker-free transformation pipeline to select potato plants functionally expressing a stack of late blight R genes. Marker-free transformation is less genotype dependent and less prone to vector backbone integration as compared to marker-assisted transformation. Thereby, this study provides an important tool for the successful deployment of R genes in agriculture and contributes to the production of potentially durable late blight resistant potatoes.

In silicoidentification of late blight susceptibility genes inSolanum tuberosum

Late blight of potato, caused by Phytophthora infestans, is responsible for high economic loss world-wide. The expression of late blight susceptibility genes (S-genes) in potato cultivars during the infection often favours the pathogenicity. Thus, the identification of the host S-genes, required to enhance susceptibility towards the pathogens under compatible interaction, is highly essential to control the infection. However, to our limited knowledge, fewer late blight S-genes have been identified in potato till date. Therefore, an attempt was made here to identify such genes through a two step classification approach using the primary and derived sequence information of potato proteins. The results revealed that WRKY transcription factor 6, Catalase protein, Shaggy-Like protein kinase NtK-1 and OTU-Like Cysteine protease were found closer to the candidate susceptibility proteins (S-proteins). These proteins were also classified into susceptible category when validated through the computer intensive techniques like Support Vector Machine, Random Forest and Artificial Neural Network. The EST database search for the above proteins has confirmed their expression under the compatible interaction. Besides, the chromosomal locations of the genes encoding these proteins were also identified, so that, the information can be utilized to develop the resistant cultivars. Thus, the predicted S-genes can be used as potential effector targets for late blight resistance in potato.

Microtuberization, minitubers formation and in vitro shoot regeneration from bud sprout of potato (Solanum tuberosum L.) cultivar K. badshah

Kufri badshah is one of the important medium maturing, blight resistant potato varieties with round to oblong tubers; it has yellowish skin, shallow eye and white pulp. This variety is popular among farmers. The study on development of tissue culture protocol was carried out using sprout as an explant for initiation of culture in MS media supplemented with eleven different combinations of growth hormones: indole butyric acid (IBA), kinetin, naphthalene acetic acid (NAA) and 2,4-dichlorophenoxy acetic acid (2,4-D). The response for growth proliferation was observed. The treatment involving a combination of IBA, kinetin, NAA and 2,4-D gave good response for growth of shoot. The resultant shoots were subcultured further using nodal cutting as explants in same media for further multiplication. The developed plantlets were hardened in green house. Hardened plants were transplanted in the soil for further growth and development. The plants yielded 3-17 healthy minitubers. For microtuber production, high level of sucrose (8%) gave promising results than low level of sucrose (3%). Keywords: Kufri badshah , explants, indole butyric acid (IBA), kinetin, naphthalene acetic acid (NAA), 2,4-dichlorophenoxy acetic acid (2,4-D) and microtuber. African Journal of Biotechnology Vol. 12(38), pp. 5640-5647

Conditional QTL underlying resistance to late blight in a diploid potato population

A large number of quantitative trait loci (QTL) for resistance to late blight of potato have been reported with a "conventional" method in which each phenotypic trait reflects the cumulative genetic effects for the duration of the disease process. However, as genes controlling response to disease may have unique contributions with specific temporal features, it is important to consider the phenotype as dynamic. Here, using the net genetic effects evidenced at consecutive time points during disease development, we report the first conditional mapping of QTL underlying late blight resistance in potato under five environments in Peru. Six conditional QTL were mapped, one each on chromosome 2, 7 and 12 and three on chromosome 9. These QTL represent distinct contributions to the phenotypic variation at different stages of disease development. By comparison, when conventional mapping was conducted, only one QTL was detected on chromosome 9. This QTL was the same as one of the conditional QTL. The results imply that conditional QTL reflect genes that function at particular stages during the host-pathogen interaction. The dynamics revealed by conditional QTL mapping could contribute to the understanding of the molecular mechanism of late blight resistance and these QTL could be used to target genes for marker development or manipulation to improve resistance.

Palisade Russet: A Late Blight Resistant Potato Cultivar Having a Low Incidence of Sugar Ends and High Specific Gravity

Palisade Russet is a medium-late maturing, lightly russeted potato cultivar notable for its resistance to late blight (Phytophthora infestans) infection of foliage and tuber. Palisade Russet is suitable for processing with low tuber glucose concentrations observed following long-term storage at a temperature as low as 5.6°C with consistently acceptable fry color scores (USDA value ≤2.0) following storage at temperatures of 5.6 to 8.9°C. Reducing sugars are also maintained uniformly throughout the tuber, resulting in a low incidence of sugar ends in French fries relative to standard processing cultivars such as Russet Burbank and Ranger Russet. Palisade Russet has shown high specific gravities in western production regions of the U.S. which may limit its acceptance by the western processing industry. However, in potato production regions with inherently low specific gravities, Palisade Russet could have potential as a processing cultivar. In full-season trials conducted in Idaho, Oregon, and Washington over a 5 year period, the average total yield of Palisade Russet across all three states was very similar to yields observed for Ranger Russet and Russet Burbank. However, the U.S. No. 1 yield of Palisade Russet was 3% and 31% higher relative to Ranger Russet and Russet Burbank, respectively. In addition to late blight, Palisade Russet is also resistant to Verticillium wilt, black dot, and pink rot, and has a moderate level of resistance to net necrosis, PVY, and early blight of both the foliage and tuber. The disease resistances of Palisade Russet make it a good candidate for organic production, or for use by growers seeking reduced pesticide inputs. Palisade Russet displays a low incidence of second growth and growth cracks, especially relative to Russet Burbank, and is intermediate between Ranger Russet and Russet Burbank for incidence of hollow heart/brown center. Blackspot bruise expression for Palisade Russet is less pronounced than for either Ranger Russet or Russet Burbank, however it is slightly more susceptible to shatter bruise. Palisade Russet was released in 2011 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon, and Washington, and is a product of the Pacific Northwest Potato Variety (Tri-State) Development Program.

Exploiting Knowledge of Pathogen Effectors to Enhance Late Blight Resistance in Potato

Late blight disease of potato, caused by Phytophthora infestans, is the most serious disease of this crop on a global scale and is thus a threat to food security. Use of resistant potato cultivars to prevent late blight does not have a very successful history, as P. infestans genotypes have overcome the deployed resistances. Thus, there is a need to identify more durable resistances, or identify and develop novel forms of resistance that exploit vulnerabilities in the biology of P. infestans. Application of molecular biology tools in P. infestans research has recently culminated in the identification of several avirulence effectors matching specific resistances in potato, the sequencing of the P. infestans genome and identification of hundreds of candidate translocated pathogen ‘RXLR’ effector proteins that may promote disease progression. Strategies for prioritising these effectors for further research are revealing those that are highly expressed during infection, difficult for the pathogen to alter rapidly, essential for P. infestans pathogenesis and recognized by resistant accessions of Solanum spp. These effector characteristics are being used to identify and characterise resistances from Solanum germplasm that may prove more durable. In addition to RXLR effectors, P. infestans also produces a broad spectrum of additional secreted proteins. These are exposed to plant cells and may potentially act to trigger resistance, either as broad spectrum pathogen-associated molecular patterns or as specific effectors of resistance. Alternatively, conserved secreted proteins may be attractive targets for novel agrichemical development. We have silenced a diverse selection of these candidate secreted proteins in P. infestans and demonstrated their effects on late blight disease development. Results from these studies are aiding a deeper understanding of P. infestans disease development and identifying potential pathogen weaknesses for exploitation in future control measures.

Qualified for Evaluation? A GM Potato and the Orders of Rural Worth

This paper examines a small-scale attempt to support collective evaluation of a transgenic potato variety. By mobilizing Laurent Thevenot’s ideas on the connectedness of the ontological and normative, it investigates how the controversial object was associated with coordinating perspectives or “orders of worth” in two focus groups. In these groups, the GM potato qualified for evaluation in relation to deterministic market forces. However, it was unclear whether the potato would operate as a beneficial market asset or merely as an accelerator of ever tougher competition. The innovation also had a tendency to disappear out of sight or to receive capacities as a transgenic application of whatever kind. Hence, it was only with effort that the discussions delved into the specific realities and circumstances of the Finnish potato production. When they did, some particular demands posed by the blight resistant potato became visible and discussable. These scripts concerned the counterparts of contract production, possibly favoring the reorganization of producers into larger associations of highly specialized professionals. However, since practical implications and possibilities received little attention, the paper suggests that more attention needs to be put into organization and preparation of multi-stakeholder evaluations. The emergence of learning potential greatly depends on the abilities and willingness of the participants to engage with speculative experiments or reality tests. This is a risky strategy for anyone who hopes that a meeting will remain within a particular scope or that it will reach a particular conclusion.

Genetic diversity among late blight resistant and susceptible potato genotypes

RAPD polymerase chain reaction analysis was used to study the genetic diversity among a wild potato variety Solanum demissum (very resistant to late blight) and six potato cultivars (Hanna, Lady-Olympia, Lady-Rosetta, Spunta, Diamant and Cara) varied in their resistance to Phytophthora infestans. Cluster analysis of six potato genotypes showed that, all tested genotypes were separated into two clusters (1 and 2). Cluster 1, included only the wild potato variety ( S. demissum), whereas cluster 2 divided into two groups (G1 and G2). Late blight high resistant cultivars Hanna and Cara were grouped in G1. Group 2 included the moderate resistant cultivar Spunta and the susceptible cultivars Diamant, Lady-Rosetta and Lady-Olympia. The potato cultivars that showed highest genetic similarity to the wild potato variety were the resistant cultivars Hanna and Cara. Lowest genetic similarity was obtained with the susceptible cultivars Lady-Rosetta, Diamant and Lady-Olympia. RAPD primer K17 yielded a band with molecular weight of 936 bp found in all susceptible potato cultivars (Lady-Rosetta, Lady-Olympia and Diamant). On the other hand, band with molecular weight of 765 bp were detected in the wild potato and the resistant cultivars Hanna and Cara. Results of this study suggested that, the RAPD marker technique could be beneficial for revealing the genetic variability of different genotypes of potato varied in their resistibility to late blight.

Debate on the Exploitation of Natural Plant Diversity to Create Late Blight Resistance in Potato

This paper reports on a debate on intriguing propositions relating to the scientific, agronomic, societal and economic impact of the BIOEXPLOIT project, focusing on late blight resistance in potato. It discusses (i) whether identifying pathogen effectors will facilitate selecting durable R genes, (ii) whether breeding for durable late blight resistance requires deploying Rpi (for Resistance to Phytophthorainfestans) genes, (iii) whether breeding strategies and cultural practices determine the durability of new resistance genes, (iv) whether marker-assisted breeding for Phytophthora infestans resistance is already in the stage of adoption, (v) to what extent genetically-modified organism technology can advance realizing late-blight resistant potato cultivars, and (vi) whether modifying R genes will result in novel broad spectrum resistance.

RESEARCH EXPERIENCE ON POTATO LATE BLIGHT DISEASE MANAGEMENT IN BANGLADESH

Potato is an important commercial crop in Bangladesh. Unfortunately, potato suffers from many destructive diseases, of which late blight, caused by Phytophthora infestans is the most important one. In Bangladesh, late blight causes serious yield loss in potato every year. Late blight was first reported in Bangladesh in 1922. In recent years more than 300 varieties, 2050 germplasm lines and 250 true potato seed (TPS) progenies were evaluated for resistance to major diseases under field conditions. Screening for late blight resistance was carried out under both natural and artificial conditions. So far more than 300 germplasm (exotic and local) and TPS progenies were screened through artificial inoculation. Of these only three lines (CIP-607, CIP-272 and CIP-616) were found to be tolerant to late blight. Some of the field resistant TPS progenies are: TS-6 × TS-9, HPS-7/67, HPS-II/13, TS-5 × TS, LM × 501, 501 × 9, 801000 and 300999. A set of 15 late blight resistant germplasm lines received from CIP, Peru in 2005 was evaluated under natural conditions of which 6-7 were found to be resistant to the disease. Attempts were made to develop late blight resistant transgenic potato varieties by transforming the RB resistance gene into two commercial varieties. Twenty races of P. infestans have so far been identified in Bangladesh. The frequency of races differed greatly with maximum occurrence of race 2. Existence of metalaxyl resistant strains of P. infestans have been identified which might be due to indiscriminate spraying of metalaxyl (Ridomil) fungicide. Both fungicide management and farmer training with farmer field schools are discussed.

Relevance of genetically modified crops in light of future environmental and legislative challenges to the agri‐environment

AbstractA key challenge for countries like Ireland up to 2030 is to produce sufficient supplies of food, feed and fuel, without compromising on public health or negatively impacting the environment. As we progress through the technology era, certain agricultural technologies [e.g. genetically modified (GM) crops] have been championed to maximise production while minimising environmental impact. Yet, multiple arguments have been made to counter such a claim, which has led to a polarisation of opinions and a plethora of generic commentaries being made in regard to the impact of this technology. Yet, few studies within the European Union (EU) have conducted a critical needs analysis to assess the potential of specific GM traits in light of issues, such as climate change, increased environmental legislation (e.g. EU Water Framework, Nitrates Directive, proposed reform to the Pesticide Directive and Common Agricultural Policy reform), mitigating biodiversity loss and sustainable biofuel production. The goal of this study is to collate a register of GM traits such that a list of potential GM crops could be prioritised against the backdrop of the challenges facing the tillage sector. Clearly, the crops with the most significant potential for genetic modification are those that are grown widely and/or receive high applications of pesticides and fertilisers (e.g. potato, wheat, barley and maize). GM traits with significant agronomic potential include late blight resistant potato, Fusarium head blight resistant wheat and Septoria resistant wheat and herbicide‐tolerant winter oilseed rape and maize. Following on from these, crops with enhanced nitrogen‐use efficiency could provide significant input to the tillage sector in light of EU‐based restrictions on nitrogen usage, crops with elevated protein content could offset the costs of imported animal feed and crops with modified oil content/lignocellulose composition could assist in biodiesel/bioenergy production at a regional level. This study is relevant to other European countries that cultivate similar crops and like Ireland, are facing multiple challenges to their tillage sector in the near future.

Correlation Between Transcript Abundance of the RB Gene and the Level of the RB-Mediated Late Blight Resistance in Potato

Numerous disease-resistance genes have been cloned and characterized in various plant species. Only a few of these reported genes were transcriptionally induced or had enhanced transcription upon pathogen infection. Here, we report that transcription of the RB gene, which was cloned from the wild potato species Solanum bulbocastanum and confers resistance to potato late blight, was significantly increased after inoculation with the late blight pathogen Phytophthora infestans. Different RB transgenic lines showed different levels of resistance, which were correlated with the amounts of RB transcript in the transgenic plants. Different transgenic lines also showed different patterns of RB transcription 1, 3, and 5 days after P. infestans inoculation. Interestingly, the RB gene showed a higher basal level of transcription and a more dramatic transcriptional increase upon inoculation in S. bulbocastanum than in all potato transgenic lines. Our results revealed a predictive correlation between transcript abundance of the RB gene and the level of the RB-mediated late blight resistance. High level of resistance was associated with a combination of rapid RB transcript induction immediately after pathogen infection followed by the steady production of RB transcript. Thus, the transcription level of the RB gene provides a valuable marker for selecting and deploying RB-containing potato lines for late blight control.

Evaluation of the effect of late blight-resistant potato plants on the structure of bacterial associations in soil

We studied the compositions of microbial associations isolated from soils where nontransgenic and transgenic late blight-resistant lines of potato varieties Lugovskoi, Charodei, and Golubizna had been grown. The analysis was based on denaturing gradient gel electrophoresis of total amplificates of 16S rRNA gene fragments and analysis of libraries of nifH gene fragments. Neither method revealed significant differences in the structure of the microbial associations isolated from soils with control or transgenic plants. The minor differences detected in the microflora ranges were no greater than those in the rhizospheres of different nontransgenic potato varieties.

Effector genomics accelerates discovery and functional profiling of potato disease resistance and phytophthora infestans avirulence genes.

Potato is the world's fourth largest food crop yet it continues to endure late blight, a devastating disease caused by the Irish famine pathogen Phytophthora infestans. Breeding broad-spectrum disease resistance (R) genes into potato (Solanum tuberosum) is the best strategy for genetically managing late blight but current approaches are slow and inefficient. We used a repertoire of effector genes predicted computationally from the P. infestans genome to accelerate the identification, functional characterization, and cloning of potentially broad-spectrum R genes. An initial set of 54 effectors containing a signal peptide and a RXLR motif was profiled for activation of innate immunity (avirulence or Avr activity) on wild Solanum species and tentative Avr candidates were identified. The RXLR effector family IpiO induced hypersensitive responses (HR) in S. stoloniferum, S. papita and the more distantly related S. bulbocastanum, the source of the R gene Rpi-blb1. Genetic studies with S. stoloniferum showed cosegregation of resistance to P. infestans and response to IpiO. Transient co-expression of IpiO with Rpi-blb1 in a heterologous Nicotiana benthamiana system identified IpiO as Avr-blb1. A candidate gene approach led to the rapid cloning of S. stoloniferum Rpi-sto1 and S. papita Rpi-pta1, which are functionally equivalent to Rpi-blb1. Our findings indicate that effector genomics enables discovery and functional profiling of late blight R genes and Avr genes at an unprecedented rate and promises to accelerate the engineering of late blight resistant potato varieties.