Bleached Region Research Articles

Fluorescence Imaging Reveals the Nuclear Behavior of Peroxisome Proliferator-activated Receptor/Retinoid X Receptor Heterodimers in the Absence and Presence of Ligand*♦

In a global approach combining fluorescence recovery after photobleaching (FRAP), fluorescence correlation spectroscopy (FCS), and fluorescence resonance energy transfer (FRET), we address the behavior in living cells of the peroxisome proliferator-activated receptors (PPARs), a family of nuclear receptors involved in lipid and glucose metabolism, inflammation control, and wound healing. We first demonstrate that unlike several other nuclear receptors, PPARs do not form speckles upon ligand activation. The subnuclear structures that may be observed under some experimental conditions result from overexpression of the protein and our immunolabeling experiments suggest that these structures are subjected to degradation by the proteasome. Interestingly and in contrast to a general assumption, PPARs readily heterodimerize with retinoid X receptor (RXR) in the absence of ligand in living cells. PPAR diffusion coefficients indicate that all the receptors are engaged in complexes of very high molecular masses and/or interact with relatively immobile nuclear components. PPARs are not immobilized by ligand binding. However, they exhibit a ligand-induced reduction of mobility, probably due to enhanced interactions with cofactors and/or chromatin. Our study draws attention to the limitations and pitfalls of fluorescent chimera imaging and demonstrates the usefulness of the combination of FCS, FRAP, and FRET to assess the behavior of nuclear receptors and their mode of action in living cells.

Targeting of voltage-gated potassium channel isoforms to distinct cell surface microdomains

Voltage-gated potassium (Kv) channels regulate action potential duration in nerve and muscle; therefore changes in the number and location of surface channels can profoundly influence electrical excitability. To investigate trafficking of Kv2.1, 1.4 and 1.3 within the plasma membrane, we combined the expression of fluorescent protein-tagged Kv channels with live cell confocal imaging. Kv2.1 exhibited a clustered distribution in HEK cells similar to that seen in hippocampal neurons, whereas Kv1.4 and Kv1.3 were evenly distributed over the plasma membrane. Using FRAP, surface Kv2.1 displayed limited mobility; approximately 40% of the fluorescence recovered within 20 minutes of photobleach (M(f)=0.41+/-0.04). Recovery occurred not by diffusion from adjacent membrane but probably by transport of nascent channel from within the cell. By contrast, the Kv1 family members Kv1.4 and Kv1.3 were highly mobile, both showing approximately 80% recovery (Kv 1.4 M(f)=0.78+/-0.07; Kv1.3 M(f)=0.78+/-0.04; without correction for photobleach); unlike Kv2.1, recovery was consistent with diffusion of channel from membrane adjacent to the bleach region. Studies using PA-GFP-tagged channels were consistent with the FRAP results. Following photoactivation of a small region of plasma membrane PA-GFP-Kv2.1 remained restricted to the photoactivation ROI, while PA-GFP-Kv1.4 rapidly diffused throughout the cell surface. Additionally, PA-GFP-Kv2.1 moved into regions of the cell membrane not adjacent to the original photoactivation ROI. Sucrose density gradient analysis indicated that half of Kv2.1 is part of a large, macromolecular complex while Kv1.4 sediments as predicted for the tetrameric channel complex. Disruption of membrane cholesterol by cyclodextrin minimally altered Kv2.1 mobility (M(f)=0.32+/-0.03), but significantly increased surface cluster size by at least fourfold. By comparison, the mobility of Kv1.4 decreased following cholesterol depletion with no change in surface distribution. The mobility of Kv1.3 was slightly increased following cyclodextrin treatment. These results indicate that (1) Kv2.1, Kv1.4 and Kv1.3 exist in distinct compartments that exhibit different trafficking properties, (2) membrane cholesterol levels differentially modulate the trafficking and localization of Kv channels and (3) Kv2.1 expressed in HEK cells exhibits a surface distribution similar to that seen in native cells.

PH-dependent Intraluminal Organization of Mucin Granules in Live Human Mucous/Goblet Cells

To study the mechanism of gel-forming mucin packaging within mucin granules, we generated human mucous/goblet cells stably expressing a recombinant MUC5AC domain fused to green fluorescent protein (GFP). The fusion protein, named SHGFP-MUC5AC/CK, accumulated in the granules together with native MUC5AC. Inhibition of protein synthesis or disorganization of the Golgi complex did not result in diminished intragranular SHGFP-MUC5AC/CK signals, consistent with long-term storage of the fusion protein. However, SHGFP-MUC5AC/CK was rapidly discharged from the granules upon incubation of the cells with ATP, an established mucin secretagogue. Several criteria indicated that SHGFP-MUC5AC/CK was not covalently linked to endogenous MUC5AC. Analysis of fluorescence recovery after photobleaching suggested that the intragranular SHGFP-MUC5AC/CK mobile fraction and mobility were significantly lower than in the endoplasmic reticulum lumen. Incubation of the cells with bafilomycin A1, a specific inhibitor of the vacuolar H+-ATPase, did not alter the fusion protein mobility, although it significantly increased (approximately 20%) the intragranular SHGFP-MUC5AC/CK mobile fraction. In addition, the granules in bafilomycin-incubated cells typically exhibited a heterogeneous intraluminal distribution of the fluorescent fusion protein. These results are consistent with a model of mucin granule intraluminal organization with two phases: a mobile phase in which secretory proteins diffuse as in the endoplasmic reticulum lumen but at a lower rate and an immobile phase or matrix in which proteins are immobilized by noncovalent pH-dependent interactions. An intraluminal acidic pH, maintained by the vacuolar H+-ATPase, is one of the critical factors for secretory protein binding to the immobile phase and also for its organization.

Preparation of a Photobleacheable Dye Capsule Nanocomposite for Reusable Recording Media

A new photobleacheable nanocomposite was developed as a reusable recording media. It is composed of polymer dye capsules containing TiO2 nanoparticles, leuco dyes, and a developer. The polymer dye capsules were prepared using the convenient one-step mini-emulsion polymerization. The morphology of the resultant polymer dye capsules were examined through a scanning electron microscopy (SEM), to show the capsule structure, which averaged 30~ 500 nm in size. The leuco dye was originally colorless, but it acquired color when it reacted with the developer. The blue colored dye capsule solution was stable under ambient conditions and could thus be utilized as a recording composition. The color of the recorded part, by coating the dye capsule solution on to a piece of white paper, was persistent. However, the recorded mark was bleached upon exposure to a UV light. Capsule morphology was not detected in the bleached region as examined by a SEM, indicating that titanium dioxide in the film acted as a photocatalyst to decompose the capsule structure. The bleaching was irreversible so that the recording media was reusable. The bleaching efficiency in photobleaching was shown to be higher than 75%.

TDP1 Overexpression in Human Cells Counteracts DNA Damage Mediated by Topoisomerases I and II

Tyrosyl DNA phosphodiesterase 1 (TDP1) is a repair enzyme that removes adducts, e.g. of topoisomerase I from the 3'-phosphate of DNA breaks. When expressed in human cells as biofluorescent chimera, TDP1 appeared more mobile than topoisomerase I, less accumulated in nucleoli, and not chromosome-bound at early mitosis. Upon exposure to camptothecin both proteins were cleared from nucleoli and rendered less mobile in the nucleoplasm. However, with TDP1 this happened much more slowly reflecting most likely the redistribution of nucleolar structures upon inhibition of rDNA transcription. Thus, a steady association of TDP1 with topoisomerase I seems unlikely, whereas its integration into repair complexes assembled subsequently to the stabilization of DNA.topoisomerase I intermediates is supported. Cells expressing GFP-tagged TDP1 > 100-fold in excess of endogenous TDP1 exhibited a significant reduction of DNA damage induced by the topoisomerase I poison camptothecin and could be selected by that drug. Surprisingly, DNA damage induced by the topoisomerase II poison VP-16 was also diminished to a similar extent, whereas DNA damage independent of topoisomerase I or II was not affected. Overexpression of the inactive mutant GFP-TDP1(H263A) at similar levels did not reduce DNA damage by camptothecin or VP-16. These observations confirm a requirement of active TDP1 for the repair of topoisomerase I-mediated DNA damage. Our data also suggest a role of TDP1 in the repair of DNA damage mediated by topoisomerase II, which is less clear. Since overexpression of TDP1 did not compromise cell proliferation, it could be a pleiotropic resistance mechanism in cancer therapy.

Mdc1 couples DNA double-strand break recognition by Nbs1 with its H2AX-dependent chromatin retention.

Mdc1/NFBD1 controls cellular responses to DNA damage, in part via interacting with the Mre11-Rad50-Nbs1 complex that is involved in the recognition, signalling, and repair of DNA double-strand breaks (DSBs). Here, we show that in live human cells, the transient interaction of Nbs1 with DSBs and its phosphorylation by ATM are Mdc1-independent. However, ablation of Mdc1 by siRNA or mutation of the Nbs1's FHA domain required for Mdc1 binding reduced the affinity of Nbs1 for DSB-flanking chromatin and caused aberrant pan-nuclear dispersal of Nbs1. This occurred despite normal phosphorylation of H2AX, indicating that lack of Mdc1 does not impair this DSB-induced chromatin change, but rather precludes the sustained engagement of Nbs1 with these regions. Mdc1 (but not Nbs1) became partially immobilized to chromatin after DSB generation, and siRNA-mediated depletion of H2AX prevented such relocalization of Mdc1 and uncoupled Nbs1 from DSB-flanking chromatin. Our data suggest that Mdc1 functions as an H2AX-dependent interaction platform enabling a switch from transient, Mdc1-independent recruitment of Nbs1 to DSBs towards sustained, Mdc1-dependent interactions with the surrounding chromosomal microenvironment.

Increased Diffusional Mobility of CFTR at the Plasma Membrane after Deletion of Its C-terminal PDZ Binding Motif

The cystic fibrosis transmembrane conductance regulator (CFTR) protein is a cAMP-regulated Cl- channel expressed at the apical plasma membrane. It has been proposed that the C-terminal PDZ binding motif of CFTR is required for its apical membrane targeting and that PDZ-domain interactions may tether CFTR to the actin cytoskeleton via soluble proteins including EBP50/NHERF1 and ezrin. We measured the diffusional mobility of human CFTR in the plasma membrane of Madin-Darby canine kidney cells by photobleaching of green fluorescent protein (GFP)-CFTR chimeras. After bleaching by a focused laser beam, GFP-CFTR fluorescence in the bleached membrane region recovered to approximately 90% of its initial level, indicating that nearly all of the CFTR was mobile. The GFP-CFTR diffusion coefficient (D) was 0.99 +/- 0.09 x 10(-10) cm2/s at 37 degrees C, similar to that of other membrane proteins. GFP-CFTR diffusion was not altered by protein kinase A or C activators but was blocked by paraformaldehyde and filipin. CFTR mutants lacking functional PDZ-binding domains (GFPCFTR-DeltaTRL and GFP-CFTR-DeltaTRA) were also mobile with D significantly increased by approximately 60% compared with GFP-CFTR. However, GFP-CFTR, GFP-CFTR-Delta TRL, and GFP-CFTR-DeltaTRA had similar mobilities (D approximately 12 x 10(-10) cm2/s) at the endoplasmic reticulum in brefeldin A-treated cells. Agents that modulate the actin cytoskeleton (cytochalasin D and jasplakinolide) altered the plasma membrane mobility of CFTR but not CFTR- DeltaTRL. EBP50 (NHERF1), a PDZ domain-containing protein that interacts with the C terminus of CFTR, diffused freely in the cytoplasm with a diffusion coefficient of 0.9 +/- 0.1 x 10(-7) cm2/s. EBP50 diffusion increased by approximately 2-fold after deletion of its ezrin-binding domain. These results indicate that wild-type CFTR is not tethered statically at the plasma membrane but that its diffusion is dependent on PDZ-domain interactions and an intact actin skeleton. PDZ-domain interactions of CFTR are thus dynamic and occur on a time scale of seconds or faster.

Rapid intermittent movement of axonal neurofilaments observed by fluorescence photobleaching.

Observations on naturally occurring gaps in the axonal neurofilament array of cultured neurons have demonstrated that neurofilament polymers move along axons in a rapid, intermittent, and highly asynchronous manner. In contrast, studies on axonal neurofilaments using laser photobleaching have not detected movement. Here, we describe a modified photobleaching strategy that does permit the direct observation of neurofilament movement. Axons of cultured neurons expressing GFP-tagged neurofilament protein were bleached by excitation with the mercury arc lamp of a conventional epifluorescence microscope for 12-60 s. The length of the bleached region ranged from 10 to 60 microm. By bleaching thin axons, which have relatively few neurofilaments, we were able to reduce the fluorescent intensity enough to allow the detection of neurofilaments that moved in from the surrounding unbleached regions. Time-lapse imaging at short intervals revealed rapid, intermittent, and highly asynchronous movement of fluorescent filaments through the bleached regions at peak rates of up to 2.8 microm/s. The kinetics of movement were very similar to our previous observations on neurofilaments moving through naturally occurring gaps, which indicates that the movement was not impaired by the photobleaching process. These results demonstrate that fluorescence photobleaching can be used to study the slow axonal transport of cytoskeletal polymers, but only if the experimental strategy is designed to ensure that rapid asynchronous movements can be detected. This may explain the failure of previous photobleaching studies to reveal the movement of neurofilament proteins and other cytoskeletal proteins in axons.

Fast repetition rate (FRR) fluorometry: variability of chlorophyll a fluorescence yields in colonies of the corals, Montastraea faveolata (w.) and Diploria labyrinthiformes (h.) recovering from bleaching.

Recently, an underwater version of a fast repetition rate fluorometer (FRRF) was developed for the non-destructive study of fluorescence yields in benthic photoautotrophs. We used an FRRF to study bleached colonies of the corals, Montastraea faveolata and Diploria labyrinthiformes at sites surrounding Lee Stocking Island, Exuma, Bahamas, to assess their recovery from bleaching ( approximately 1 year after the initial bleaching event) induced by elevated temperatures. The steady state quantum yields of chlorophyll a fluorescence (DeltaF'/F'(m)) from photosystem II (PSII) within coral colonies were separated into three categories representing visibly distinct degrees of bleaching ranging from no bleaching to completely bleached areas. Differences in DeltaF'/F'(m) were significantly different from bleached to unbleached regions within colonies. Dark, unbleached regions within colonies exhibited significantly higher DeltaF'/F'(m) values (0.438+/-0.019; mean+/-S.D.) when compared to lighter regions, and occupied a majority of the colonies' surface area (46-73%). Bleached regions exhibited significantly lower DeltaF'/F'(m) (0.337+/-0.014) and covered only 7-25% of the colonies' surface area. The observations from this study suggest that zooxanthellae in bleached regions of a colony exhibit reduced photosynthetic activity as long as one year after a bleaching event and that in situ fluorescence techniques such as FRRF are an effective means of studying coral responses and recovery from natural or anthropogenic stress in a non-destructive manner.

Measurement of Molecular Diffusion in Solution by Multiphoton Fluorescence Photobleaching Recovery

Multiphoton fluorescence photobleaching recovery (MP-FPR) is a technique for measuring the three-dimensional (3D) mobility of fluorescent molecules with 3D spatial resolution of a few microns. A brief, intense flash of mode-locked laser light pulses excites fluorescent molecules via multiphoton excitation in an ellipsoidal focal volume and photobleaches a fraction. Because multiphoton excitation of fluorophores is intrinsically confined to the high-intensity focal volume of the illuminating beam, the bleached region is restricted to a known, three-dimensionally defined volume. Fluorescence in this focal volume is measured with multiphoton excitation, using the attenuated laser beam to measure fluorescence recovery as fresh unbleached dye diffuses in. The time course of the fluorescence recovery signal after photobleaching can be analyzed to determine the diffusion coefficient of the fluorescent species. The mathematical formulas used to fit MP-FPR recovery curves and the techniques needed to properly utilize them to acquire the diffusion coefficients of fluorescently labeled molecules within cells are presented here. MP-FPR is demonstrated on calcein in RBL-2H3 cells, using an anomalous subdiffusion model, as well as in aqueous solutions of wild-type green fluorescent protein, yielding a diffusion coefficient of 8.7 × 10 −7 cm 2s −1 in excellent agreement with the results of other techniques.

Photobleaching in a g-Ge 0.27Sn 0.03Se 0.7 thin film

Photobleaching was observed by optical transmission measurements performed using constant 655 nm (sub-band gap) illumination of a g-Ge 0.27Sn 0.03Se 0.7 thin (<2 μm) film sample deposited by thermal evaporation of bulk starting materials on silica. The threshold power density for destroying the film was 2.7 kW cm −2 for a film thickness of 1.75 μm. The effective thermal conductivity was calculated and the temperature increase in the illuminated spots was estimated. A little below the destruction threshold photobleaching may be attributed to band gap increase with thermal annealing. But photobleaching is also observed at low power densities inducing spot temperatures well below the glass transition. No noticeable crystallization of the bleached film region was observed either optically or by X-ray diffraction.

Technical aspects of an efficient multiple solvent suppression pulse sequence

The technical aspects of the excitation sculpting sequence with modification for multiple solvent suppression are analyzed in detail. Proper choice of parameters for these experiments yields spectra with almost complete absence of solvent signals. The bleached regions centered at the solvent resonances are minimized by an appropriate selection of shape and length for the soft 180° shifted laminar pulses. Novel variants of the basic experiment with improved performance for analysis of compounds dissolved in water–alcohol mixtures are reported. Application of these schemes to a 2 mM solution of α-yohimbine in H 2O–CH3CN and H2O–EtOH and to a few μM solution derived from a natural product extract in H2O–CH3OH are presented. © 1999 John Wiley & Sons, Ltd.

Femtosecond time-resolved measurements of terthiophene: fast singlet–triplet intersystem crossing

Femtosecond time-resolved studies using pump–probe spectroscopy were performed on 2,2′:5′,2″-terthiophene in solution. Optical density changes ΔD were observed in the bleaching region at different excitation wavelengths. The decay curves could be described using a bi-exponential fitting procedure. A fast decay time of 2 ps and a slower one varying with excitation wavelengths (400 nm: 126 ps; 385 nm: 74 ps; 374 nm: 51 ps) were determined. To explain this time behavior we suggest a model with two channels for intersystem crossing starting from different vibronic states in the singlet system into suitable states of the triplet manifold. Experimental data, as well as the applied model, indicate that we observed a fast two-channel intersystem crossing process.

Direct Measurement of the Effective Rate Constant for Primary Charge Separation in Isolated Photosystem II Reaction Centers

Transient absorption measurements of the pheophytin a anion band and Qx band bleach region using preferential excitation of P680 are performed on isolated photosystem II reaction centers to determine the effective rate constant for charge separation. A novel analysis of the Qx band bleach region explicitly takes the changing background into account in order to directly measure the rate of growth of the bleach. Both spectral regions reveal biphasic kinetics, with a ca. (8 ps)-1 rate constant for the faster component, and a ca. (50 ps)-1 rate constant for the slower component. We propose that the faster component corresponds to the effective rate constant for charge separation from within the equilibrated reaction center core and provides a lower limit for the intrinsic rate constant for charge separation. The slower component corresponds to charge separation that is limited by slow energy transfer from a long-wavelength accessory chlorophyll a.

Synaptic Vesicle Movements Monitored by Fluorescence Recovery after Photobleaching in Nerve Terminals Stained with FM1-43

We used the fluorescence recovery after photobleaching technique to monitor movements of synaptic vesicles in top views of living frog motor nerve terminals that had been prestained with the fluorescent dye FM1-43. In each experiment, a small portion of a single stained vesicle cluster was bleached with a laser and monitored subsequently for signs of recovery as neighboring, unbleached vesicles moved into the bleached region. In resting terminals, little or no recovery from photobleaching occurred. Repetitive nerve stimulation, which caused all fluorescent spots to grow dim as dye was released from exocytosing vesicles, did not promote recovery from photobleaching. Pretreatment with botulinum toxin (type A, C, or D) blocked exocytosis and destaining, but intense nerve stimulation still did not cause significant recovery in bleached regions. These results suggest that lateral movements of synaptic vesicles are restricted severely in both resting and stimulated nerve terminals. We tested for laser-induced photodamage in several ways. Bleached regions could be restained fully with FM1-43, and these restained regions could be destained fully by nerve stimulation. Partially bleached regions could be destained, although the rate of destaining was lower than normal. Brisk recovery from photobleaching occurred after treatment with okadaic acid, which disrupts synaptic vesicle clusters and causes vesicles to spread throughout the nerve terminal. These results suggest that vesicle translocation and recycling machinery was intact in photobleached regions.

Photophysics and dynamics of the lowest excited singlet state in long substituted polyenes with implications to the very long-chain limit

In this paper we explore the intramolecular relaxation processes within two long carotenoids, namely decapreno-β-carotene (M15) and dodecapreno-β-carotene (M19) with 15 and 19 conjugated double bonds (N), respectively. Amplified 200 fs pulses at 590 nm were used to excite the optically allowed S0→S2 (1 1Ag→1 1Bu) transition of the two carotenoids. The excited state dynamics were probed by continuum light between 400–890 nm in solvents with different polarizabilities. The transient absorption spectra consist of a bleaching region, due to loss of ground state absorption, and of an excited state absorption region at longer wavelengths, due to the S1→Sn transition. The Sn state was assigned to an n 1Bu state. The overall wavelength dependence of the measured kinetics could be well described by introducing three decay time constants. One reflects the S1 lifetime (τ1) and was determined to 1.1 and 0.5 ps for M15 and M19, respectively. A second lifetime, between 5 and 15 ps, was attributed to vibrational cooling in the ground state. A third decay time was in the subpicosecond range, and was ascribed to the vibrational redistribution and relaxation of the S1 potential surface after being populated by the subpicosecond S2–S1 internal conversion. No significant change of the decay constants was observed for M15 embedded in a 77 K matrix. This shows that the relaxation rates are only influenced by intramolecular processes. The S2 lifetime was shorter than the pulse duration and was estimated to be in the order of 100 fs. The S0→S2 transition of M15 in the liquid phase exhibits a 0.39 anisotropy at short times, while the S1→Sn transition has an initial value of only 0.31. This corresponds to an angle of 23° between the transition dipoles. The measured S1 rate constants were analyzed, together with decay constants of shorter carotenes, in terms of the energy gap law. When going from the shortest (N=5) to the longest (N=19) polyene, τ1 decreases about 6000 times, i.e., from 3 ns to 0.5 ps. By using an empirical form of the energy gap law the 0–0 transition of S1(2 1Ag)→S0 was estimated to be located at 11 300 and 10 200±1 000 cm−1 for M15 and M19, respectively. By fitting the excitation energies of all carotenes in the series (3≤N≤19) with a truncated two or three term expansion of a power series in 1/N the long-chain limit values were extrapolated to be 11 000 and 3 500 cm−1 for the 1 1Bu and 2 1Ag state, respectively. The implication of these limit values on the electronic structure of polyacetylene are discussed.

Analysis of the steady-state dynamics of organelle motion in cultured neurites: putative indicator of neurotoxic effect.

1. The objective of this study was to develop a physiologically based method to evaluate the neurotoxic potential of drug candidates in vitro. Rat embryo midbrain cells were grown in micromass culture, and the movement of mitochondria labelled with the fluorescent dye rhodamine 123 was quantified in fasciculated neurites, using a laser cytometer. 2. The rhodamine 123 signal in a defined region of fascicle was quantified and photobleached with the laser. A series of post-photobleach scans revealed the movement of fluorescent-labelled mitochondria into the bleached region from adjacent unbleached regions. Recovery of fluorescence is a measure of the size of the mobile pool of mitochondria relative to the total (moving plus stationary) pool. 3. The steady-state levels of fluorescence recovery was dependent on intracellular calcium and magnesium concentrations, energy status (ATP), and microtubule integrity (post taxol or vinblastine treatment). 4. This technique may be a useful indicator of neurotoxic effect.

Genetically Programmed Chloroplast Dedifferentiation as a Consequence of Plastome-Genome Incompatibility in Oenothera.

Comparision of chloroplast from plants with one of four plastome types (I, II, III, IV) in the nuclear background of Oenothera elata strain Johansen addressed the effects of plastome-genome incompatibility with respect to leaf pigmentation, plastid ultrastructure, chlorophyll a/chlorophyll b ratio, and photosynthetic electron transport. Previous observations of plastomes I, II, and IV in this nuclear background have revealed no indications of incompatibility, but the studies reported here demonstrate that chloroplasts of plastome IV have subtle alterations in their photosynthetic abilities, in particular, deficiencies in photosystem II. The well-characterized "hybrid bleaching" of plants with the AA genotype and plastome III involves leaves that become bleached in the center while remaining green at the tips, edges, and veins. Electron transport assays performed on fractionated bleached and green tissue from the same plants show photosynthetic defects in both the green and bleached regions, although defects in the latter are more severe. Ultrastructural studies show that chloroplasts in the bleached areas enlarge, thylakoid membranes become swollen and vesiculated, and production of new thylakoids is blocked, with chloroplasts appearing to undergo a programmed senescence. A time course revealed that the senescence is actually a reversible dedifferentiation. Alterations in the composition of medium to which AA/III seedlings were transferred showed that the presence of auxin can prevent the development of the typical incompatibility response, with leaf tissue remaining green rather than bleaching. It is proposed that differences in concentrations of plant growth regulators may be responsible for the persistence of normal chloroplasts near the vascular tissue and leaf blade edges and that seasonal fluctuations in auxin levels could explain the periodic bleaching that occurs in older plants.

Microtubule behavior in PC12 neurites: Variable results obtained with photobleach technology

We have examined the effects of various means of photobleaching on the recovery of fluorescence, movement, and morphology of the microtubules in the neurites of rhodamine-tubulin-injected PC12 cells. We find that, depending on power of and time of exposure to the bleaching beam, we can generate at least three different patterns of fluorescence recovery in regenerating PC12 neurites. If bleaching is performed with a relatively low-power beam for an extended period, fluorescence in polymer recovers very little after 1 hour. Under these conditions, however, tubulin immunostaining is seen extending through the bleach zone, and microtubules are present through the bleached zone in thin section electron micrographs. If bleaching is performed with a high-power laser, for 0.5-5 seconds, fluorescence recovery also is quite slow, but electron microscopic observations reveal that no microtubules extend through the bleached region of the neurite, and the uranyl acetate-stained cytoplasm appears more electron lucent than in the unbleached neurite. Finally, if bleaching is performed by very brief exposure to a high-intensity laser beam, resulting in an incomplete reduction of fluorescence intensity through the bleach zone, fluorescence recovery occurs within 20-30 minutes, and immunostained microtubules appear intact through the bleach zone; electron microscopy confirms that microtubules extend through the bleached zone of such neurites. In all three cases, movement of the bleach zone is observed in approximately half of the experimental neurites. These results indicate that highly variable microtubule behaviors can be obtained with photobleach technology, presumably due to different levels and pathways of photodamage generated by different bleach protocols. Nevertheless, it is clear that both turnover and movement of microtubules occur in PC12 neurites, and both are likely to be involved in neurite maintenance and growth.

Spatial Fourier analysis of video photobleaching measurements. Principles and optimization

The major use of the fluorescence recovery after photobleaching (FRAP) technique is to measure the translational motion of the molecular components in various condensed media. In a conventional laser spot photobleaching experiment, a photomultiplier is used to measure the total brightness levels of the bleached region in the sample, so no spatial information can be directly obtained. In video-FRAP, a series of images after photobleaching is acquired, allowing the spatial character of the recovery to be determined; this permits direct detection of both anisotropic diffusion and flow. To utilize all of the available image data to determine the transport coefficients, a two-dimensional spatial Fourier transform analysis of the images after photobleaching was employed. The change in the transform between two time points reflects the action of diffusion during the interim. An important advantage of this method, which involves taking the ratio of image transforms at different time points, is that it does not require a specific initial condition to be created by laser photobleaching. The ability of the analysis to extract transport coefficients from computer-simulated diffusional recovery is assessed in the presence of increasing amounts of noise. Experimental data analysis from the diffusion of proteins in viscous solutions and from the diffusion of protein receptors on cell surfaces demonstrate the feasibility of the Fourier analysis to obtain transport coefficients from the video FRAP measurement.