Black-tailed Deer Research Articles

Identifying individual ungulates from fecal DNA: a comparison of field collection methods to maximize efficiency, ease, and success

Non-invasive genetic sampling can facilitate the identification of individual animals across a landscape, with applications to management and conservation. Fecal material is a readily available source of DNA, and various methods exist for collecting fecal samples for DNA preservation. In particular, swab methods offer considerable promise, but their utility in real-world field contexts remains relatively untested. We systematically compared multiple genetic fecal sampling methods across all stages of data collection and analysis, including sampling in the field, DNA extraction in the lab, and identification of individuals using microsatellite genotyping. We collected 112 fecal samples from black-tailed deer (Odocoileus hemionus columbianus) in the field in Mendocino County, California, across a range of sample conditions of unknown age. We systematically compared the efficiency, ease, and genotyping success of three methods for field collection and storage of ungulate fecal samples: whole pellets in ethanol, whole dry pellets in paper envelopes, and cotton swabs in buffer. Storage method, sample condition, and their interaction predicted genotyping success in the top binomial GLMMs. We found that swabbing pellets resulted in the greatest percentage of individually identifiable genotypes (81%, compared to 60% for dry samples and 56% for ethanol), despite lower DNA concentrations. While swabbing pellets requires a greater time investment in the field, the samples are easier and safer to store and transport, and subsequent labwork is more efficient as compared to whole-pellet collection methods. We, therefore, recommend the swab method for most contexts. We provide additional recommendations and field protocols based on subsequent collection of 2284 swab samples for a larger monitoring study of the deer population, given that this large number of samples spanned a range of sample conditions and time spent in storage.

Visualizing Connectivity for Wildlife in a World Without Roads

Roads are not the only determining factor for wildlife movement across the landscape, but due to the extensive distribution of the road network their impact can be dramatic. Although it has been well documented that roads decrease habitat connectivity for wildlife due to animal-vehicle collisions, habitat fragmentation, and avoidance behavior, approaches for identifying connectivity across the landscape often do not fully examine the barrier effect of roads. Here, we explored the extent of the impact of roadways on wildlife connectivity by using Omniscape to model connectivity including and without the barrier effect of roads, then evaluating the difference between these two models. We created these connectivity models for three organisms that represent different taxa, movement types, and habitat requirements: northern red-legged frog, Pacific-slope flycatcher, and Columbian black-tailed deer. We found that roads had a strong impact on connectivity for all three species. Change in flow was most pronounced on the roads, especially where they ran through permeable habitat for a species. Roads also influenced connectivity well beyond the footprint of the roadway, affecting flows intersecting the roads and diffusely around them. The extent and nature of this impact depended on the species, road density, and surrounding habitat. The different effects across species highlight the importance of considering different taxa simultaneously while planning. Moreover, the ability to assess modeled wildlife habitat connectivity in the absence of existing widespread linear infrastructure allows for critical evaluation of where mitigation activities, such as wildlife crossing structures and fencing, may be most beneficial. Hence, this novel approach has practical application for increasing connectivity for wildlife across roads.

Ecology of Ixodes pacificus Ticks and Associated Pathogens in the Western United States.

Lyme disease is the most important vector-borne disease in the United States and is increasing in incidence and geographic range. In the Pacific west, the western black-legged tick, Ixodes pacificus Cooley and Kohls, 1943 is an important vector of the causative agent of Lyme disease, the spirochete, Borrelia burgdorferi. Ixodes pacificus life cycle is expected to be more than a year long, and all three stages (larva, nymph, and adult) overlap in spring. The optimal habitat consists of forest cover, cooler temperatures, and annual precipitation in the range of 200–500 mm. Therefore, the coastal areas of California, Oregon, and Washington are well suited for these ticks. Immature stages commonly parasitize Western fence lizards (Sceloporus occidentalis) and gray squirrels (Sciurus griseus), while adults often feed on deer mice (Peromyscus maniculatus) and black-tailed deer (Odocoileus h. columbianus). Ixodes pacificus carry several pathogens of human significance, such as Borrelia burgdorferi, Bartonella, and Rickettsiales. These pathogens are maintained in the environment by many hosts, including small mammals, birds, livestock, and domestic animals. Although a great deal of work has been carried out on Ixodes ticks and the pathogens they transmit, understanding I. pacificus ecology outside California still lags. Additionally, the dynamic vector–host–pathogen system means that new factors will continue to arise and shift the epidemiological patterns within specific areas. Here, we review the ecology of I. pacificus and the pathogens this tick is known to carry to identify gaps in our knowledge.

Mitochondrial capture and subsequent genetic divergence generates a novel haplogroup: evidence from ancient and ongoing hybridization in mule and white-tailed deer

AbstractOdocoileus virginianus (white-tailed deer) and O. hemionus (mule deer) are sympatric across much of North America. Molecular evidence suggests that up to 24% of individuals in some populations are a product of hybrid ancestry. Several studies have alluded to ancient and recent introgression between Odocoileus spp.; however, no divergence dates were proposed. Herein, phylogenetic analyses of DNA sequences obtained from the mitochondrial Cytochrome b gene in 690 individuals identified three clades corresponding to black-tailed deer, white-tailed deer, or a unique combination of both white-tailed deer and mule deer. White-tailed deer and mule deer diverged from a common ancestor of approximately 3.13 mya followed by an ancient hybridization event of approximately 1.32 mya, in which the white-tailed deer mitochondrial genome was “captured” by mule deer. This hybridization event produced a novel haplogroup for white-tailed deer and mule deer located west of the Appalachian Mountains and east of the Cascade Range, south to Veracruz, Mexico, and north to the Yukon Territory, Canada. The ancestral mule deer-like mitochondrial genome appears to be restricted to black-tailed deer distributed along the western portion of the Cascade and Sierra Nevada Ranges of the United States and Canada, whereas the ancestral white-tailed deer-like mitochondrial genome is restricted to the eastern United States and portions of Latin America and Caribbean regions. The “captured mitochondrial genome” has continued on an independent evolutionary trajectory and represents a unique and broadly distributed haplogroup that is 7.25% and 2.84% different from the ancestral mule deer and ancestral white-tailed deer haplogroups, respectively.

Plant community succession following ungulate exclusion in a temperate rainforest

AbstractEcosystem structure and processes of coastal temperate rainforests of the Pacific Northwest are thought to be strongly influenced by herbivory primarily of Roosevelt elk (Cervus elaphus roosevelti) and secondarily of Columbian black‐tailed deer (Odocoileus hemionus columbianus). Two large (0.5‐ha) exclosures were built in old‐growth coniferous rainforest communities in Olympic National Park, Washington, during 1979 to study these effects. Cover of shrubs, ferns, herbs, and graminoids and numbers of tree seedlings were described over 36 yr. Results show a sequence following ungulate exclusion of early release of shrubs, ferns, and herbs followed by eventual dominance of shrubs as other vegetation layers become shaded. Short‐term responses of individual species reflected functional traits related to ability to avoid or tolerate herbivory. Over the longer term, effects reflected changing competitive relationships among vegetation layers and other ecosystem dynamics such as the provision of fallen trees in the appropriate decay class to serve as establishment substrate for tree seedlings. In aggregate, vegetation composition shifted after 36 yr from a system dominated by herbaceous cover with a major graminoid component to one dominated by shrubs (5‐ to 6‐fold absolute increase) and ferns (5–7% increase in absolute cover), less absolute herb cover (15–20% loss), and almost no graminoids (<1.5% cover remaining in any plot) after 36 yr. These changes represented a substantial loss in plant community diversity with a loss of 46 of 74 species. Elk abundance outside of the exclosures began to decline in the 1990s leading to parallel changes in plant community trajectories outside of exclosures to those initially seen inside. While this suggests plant community responses inside the exclosures were also driven by elk exclusion, the strength of this response depends on elk abundance.

Contrasting patterns of risk from human and non-human predators shape temporal activity of prey.

Spatiotemporal variation in predation risk arises from interactions between landscape heterogeneity, predator densities and predator hunting mode, generating landscapes of fear for prey species that can have important effects on prey behaviour and ecosystem dynamics. As widespread apex predators, humans present a significant source of risk for hunted animal populations. Spatiotemporal patterns of risk from hunters can overlap or contrast with patterns of risk from other predators. Human infrastructure can also reshape spatial patterns of risk by facilitating or impeding hunter or predator movement, or deterring predators that are themselves wary of humans. We examined how anthropogenic and natural landscape features interact with hunting modes of rifle hunters and mountain lions Puma concolor to generate spatiotemporal patterns of risk for their primary prey. We explored the implications of human-modified landscapes of fear for Columbian black-tailed deer Odocoileus hemionus columbianus in Mendocino County, California. We used historical harvest records, hunter GPS trackers and camera trap records of mountain lions to model patterns of risk for deer. We then used camera traps to examine deer spatial and temporal activity patterns in response to this variation in risk. Hunters and mountain lions exhibited distinct, contrasting patterns of spatiotemporal activity. Risk from rifle hunters, who rely on long lines of sight, was highest in open grasslands and near roads and was confined to the daytime. Risk from mountain lions, an ambush predator, was highest in dense shrubland habitat, farther from developed areas, and during the night and crepuscular periods. Areas of human settlement provided a refuge from both hunters and mountain lions. We found no evidence that deer avoided risk in space at the scale of our observations, but deer adjusted their temporal activity patterns to reduce the risk of encounters with humans and mountain lions in areas of higher risk. Our study demonstrates that interactions between human infrastructure, habitat cover and predator hunting mode can result in distinct spatial patterns of predation risk from hunters and other predators that may lead to trade-offs for prey species. However, distinct diel activity patterns of predators may create vacant hunting domains that reduce costly trade-offs for prey. Our study highlights the importance of temporal partitioning as a mechanism of predation risk avoidance.

Site fidelity and behavioral plasticity regulate an ungulate's response to extreme disturbance.

With rapid global change, the frequency and severity of extreme disturbance events are increasing worldwide. The ability of animal populations to survive these stochastic events depends on how individual animals respond to their altered environments, yet our understanding of the immediate and short‐term behavioral responses of animals to acute disturbances remains poor. We focused on animal behavioral responses to the environmental disturbance created by megafire. Specifically, we explored the effects of the 2018 Mendocino Complex Fire in northern California, USA, on the behavior and body condition of black‐tailed deer (Odocoileus hemionus columbianus). We predicted that deer would be displaced by the disturbance or experience high mortality post‐fire if they stayed in the burn area. We used data from GPS collars on 18 individual deer to quantify patterns of home range use, movement, and habitat selection before and after the fire. We assessed changes in body condition using images from a camera trap grid. The fire burned through half of the study area, facilitating a comparison between deer in burned and unburned areas. Despite a dramatic reduction in vegetation in burned areas, deer showed high site fidelity to pre‐fire home ranges, returning within hours of the fire. However, mean home range size doubled after the fire and corresponded to increased daily activity in a severely resource‐depleted environment. Within their home ranges, deer also selected strongly for patches of surviving vegetation and woodland habitat, as these areas provided forage and cover in an otherwise desolate landscape. Deer body condition significantly decreased after the fire, likely as a result of a reduction in forage within their home ranges, but all collared deer survived for the duration of the study. Understanding the ways in which large mammals respond to disturbances such as wildfire is increasingly important as the extent and severity of such events increases across the world. While many animals are adapted to disturbance regimes, species that exhibit high site fidelity or otherwise fixed behavioral strategies may struggle to cope with increased climate instability and associated extreme disturbance events.

Using LiDAR and Random Forest to improve deer habitat models in a managed forest landscape

Conservation strategies are hindered by a lack of accurate maps of important habitat for many wildlife species, but especially for species inhabiting managed forest landscapes. Prioritizing restoration efforts on Alaska’s Tongass National Forest from past extensive clearcut logging is extremely challenging given the difficulty in accurately mapping its remote, rugged temperate rainforest landscapes. We tested the application of airborne light detection and ranging (LiDAR) technology to build a winter habitat model for Sitka black-tailed deer (Odocoileus hemionus sitkensis), the primary herbivore in the coastal temperate rainforest. We analyzed the importance of geomorphometric and forest structure characteristics as predictors of deer winter habitat selection using Random Forest applied to a 3-year GPS relocation dataset collected from 40 adult female deer. The LiDAR-based habitat model had a predictive performance of 94% (Out-of-bag error = 6%), a 10% lower model error compared to air-photo interpreted polygons and modeled plot data. Random Forest also outperformed analogous resource selection function models based on a comprehensive k-fold cross-validation. Deer habitat selection patterns in the LiDAR-based model were nonlinear across geomorphometric and forest structure predictive variables, and generally supported existing studies of deer habitat selection. Besides improving deer conservation and management on the Tongass National Forest, our approach could greatly enhance the accuracy and resolution of habitat maps used for conservation and restoration planning across large managed forest landscapes.

Deer exclusion unveils abiotic filtering in forest understorey plant assemblages.

The role of deer (family Cervidae) in ecosystem functioning has traditionally been neglected by forest ecologists due to the animal's scarcity in most parts of the northern hemisphere. However, the dramatic rebound in deer populations throughout the 20th century has brought deer browsing to the forefront of forest ecological questioning. Today there is ample evidence that deer affect tree regeneration, understorey plant and animal diversity, and even litter decomposition. However, the mechanisms underlying the effects of deer on forest ecosystems remain unclear. Among others, the relative role of abiotic factors versus biotic interactions (e.g. herbivory) in shaping plant assemblages remains largely unknown. We used a large-scale experiment with exclosures distributed along abiotic gradients to understand the role of black-tailed deer (Odocoileus hemionus sitchensis) on the forest understorey on the Haida Gwaii archipelago (western Canada), a unique context where most of the key ecological effects of deer presence have already been intensively studied. Our results demonstrate that 20 years of deer exclusion resulted in a clear increase in vascular plant richness, diversity and cover, and caused a decline in bryophyte cover. Exclusion also unveiled abiotic (i.e. soil water availability and fertility) filtering of plant assemblages that would otherwise have been masked by the impact of abundant deer populations. However, deer exclusion did not lead to an increase in beta diversity, probably because some remnant species had a competitive advantage to regrow after decades of over browsing. We demonstrated that long-term herbivory by deer can be a dominant factor structuring understorey plant communities that overwhelms abiotic factors. However, while exclosures prove useful to assess the overall effects of large herbivores, the results from our studies at broader scales on the Haida Gwaii archipelago suggest that exclosure experiments should be used cautiously when inferring the mechanisms at work.

Resource use by an apex mesocarnivore, Pacific marten, in a highly modified forested island ecosystem

Apex mesocarnivores can have a large influence on the functioning of plant and animal communities. Such effects can be more pronounced in relatively depauperate island ecosystems, especially in the context of a legacy of landscape change and introduced species. One such ecosystem is Haida Gwaii, British Columbia, Canada, where a long history of introduced species and forest harvesting has greatly influenced the composition of the plant and animal communities. Most notably, Sitka black-tailed deer (Odocoileus hemionus sitkensis), an introduced and unchecked invasive species, has interacted with forest harvesting to greatly change the understory structure and composition of those temperate rainforests. Little is known of the habitat ecology of Pacific marten (Martes caurina), the small-bodied apex predator on those islands. We used camera traps to monitor the distribution and habitat ecology of marten across 2 winters. We used mixed-effects logistic regression to test 14 a priori hypotheses represented by statistical models formulated at two spatial scales (100 and 1000 m), with four categories of explanatory factors: sampling bias, forest structure, topography, and human disturbance. Relationships between detections and covariates from the top models revealed that at the 100-m scale, marten were more likely to use habitat that was closer to streams and marine shorelines and that contained a small area of forest harvesting. Marten detections were associated with habitat containing some component of forest edge and road, suggesting foraging behavior adapted to invasive deer, an important source of carrion for marten during winter. The broad use of habitats by Pacific marten suggests that intraguild competition and predation might occur with several species at risk including the endemic Haida ermine (Mustela ermine haidarum). Those two species would likely overlap in diet and distribution when co-occurring across low-elevation coastal habitats. Conservation planning on Haida Gwaii should consider measures that decrease the potential for competition or predation between marten and species at risk.

Spatial and temporal variability in the diet of Pacific marten (Martes caurina) on Haida Gwaii: an apex predator in a highly modified ecosystem

Knowledge of the diet ecology of apex predators in insular island ecosystems has direct applications to the conservation of endemic species at risk of extinction. We used stable isotopes of carbon and nitrogen to infer resource-use strategies of an indigenous predator, the Pacific marten (Martes caurina (Merriam, 1890)), in a highly modified ecosystem on Haida Gwaii, British Columbia, Canada. We used Bayesian isotopic mixing models to estimate the relative contributions of different food sources to marten diet across seasons and during overall lifetime, and to determine how diet varied with different levels of access to marine resources. Isotopes of carbon and nitrogen measured in hair and muscle tissue suggested that marten consumed salmon (3%–17%) and berries (25%–37%) seasonally; these diet groups were relatively minor components of the lifetime diet. Analysis of bone collagen suggested that terrestrial fauna — including birds, deer, small mammals, and invertebrates — contributed the most to diet (41%–55%), and marine invertebrates (38%–48%), not salmon (0%–3%), were the main allochthonous marine nutrient subsidy to lifetime diet. Plasticity in foraging ecology, combined with a broad dietary niche, introduced prey, notably the invasive Sitka black-tailed deer (Odocoileus hemionus sitkensis Merriam, 1898), as well as abundant marine resources, may allow marten to outcompete other indigenous and endemic carnivores on Haida Gwaii.

Can't bear the competition: Energetic losses from kleptoparasitism by a dominant scavenger may alter foraging behaviors of an apex predator

The interspecific interactions of apex predators are integral to the function of ecological communities, but most studies have focused on understanding their top down effects. Kleptoparasitism (the stealing of procured food) by dominant scavengers can have negative effects on populations and behaviors of apex predators. We captured 7 pumas (Puma concolor) and fitted them with GPS collars to investigate potential kill sites (n = 352), some of which we monitored with camera traps (n = 58). We analyzed whether observed kleptoparasitism by American black bears (Ursus americanus) affected puma energetics and foraging behavior. We found that black bears were the most frequent scavenger of puma kills (72.4%), and we documented bears scavenging puma kills during every month. The top model for bear detection of puma kills included prey size, temperature, and canopy cover, with bears more likely to scavenge from adult black-tailed deer (Odocoileus hemionus columbianus) carcasses in warmer temperatures and under dense canopy cover. When black bear scavenging occurred, pumas spent 22% less time at their kill and incurred energetic losses. In response, pumas shortened their inter-kill intervals by 1.3 days thus increasing their kill rates. Our results demonstrate how a dominant scavenger directly mediates the foraging behavior of an apex predator. These results suggest that community interactions do not necessarily start at the top in top-down systems, and the effects of predators on prey populations can only be understood within their respective ecological communities.

Scavenging of Animal Carcasses by Gumaga nigricula (Sericostomatidae, Trichoptera), an Apparent Herbivore

Caddisflies within the genus Gumaga are generally considered shredders (i.e., consumers of leaf litter) or grazers (i.e., consumers of algae). We report on observations of Gumaga nigricula scavenging animal carcasses within and adjacent to isolated pools along intermittent reaches of Coyote Creek, Santa Clara County, California, USA. In particular, during the summer of 2018, we observed G. nigricula scavenging fish carcasses within isolated pools as well as bits of flesh from the bones of a black-tailed deer (Odocoileus hemionus columbianus) deposited on the stream bank. To the best of our knowledge, our observations represent the first published record of Gumaga spp. scavenging animal carcasses. Our observations also highlight how deteriorating conditions within isolated pools create a late-summer resource pulse for scavengers.

The Importance of Environmental Variability and Transient Population Dynamics for a Northern Ungulate

The pathways through which environmental variability affects population dynamics remain poorly understood, limiting ecological inference and management actions. Here, we use matrix-based population models to examine the vital rate responses to environmental variability and individual traits, and subsequent transient dynamics of the population in response to the environment. Using Sitka black-tailed deer (Odocoileus hemionus sitkensis) in Southeast Alaska as a study system, we modeled effects of inter-annual process variance of covariates on female survival, pregnancy rate, and fetal rate, and summer and winter fawn survival. To examine the influence of environmental variance on population dynamics, we compared asymptotic and transient perturbation analysis (elasticity analysis, a life-table response experiment, and transience simulation). We found that summer fawn survival was primarily determined by black bear (Ursus americanus) predation and was positively influenced by mass at birth and female sex. Winter fawn survival was determined by malnutrition in deep-snow winters and was influenced by an interaction between date of birth and snow depth, with late-born fawns at greater risk in deep-snow winters. Adult female survival was the most influential vital rate based on classic elasticity analysis, however, elasticity analysis based on process variation indicated that winter and summer fawn survival were most variable and thus most influential to variability in population growth. Transient dynamics produced by non-stable stage distributions produced realized annual growth rates different from predicted asymptotic growth rates in all years, emphasizing the importance of winter perturbations to population dynamics of this species.

Deer slow down litter decomposition by reducing litter quality in a temperate forest

Litter decomposition is a key process that allows the recycling of nutrients within ecosystems. In temperate forests, the role of large herbivores in litter decomposition remains a subject of debate. To address this question, we used two litterbag experiments in a quasiexperimental situation resulting from the introduction of Sitka black-tailed deer Odocoileus hemionus sitkensis on forested islands of Haida Gwaii (Canada). We investigated the two main pathways by which deer could modify litter decomposition: change in litter quality and modification of decomposer communities. We found that deer presence significantly reduced litter mass loss after 1 yr, mainly through a reduction in litter quality. This mass loss reflected a 30 and 28% lower loss of carbon (C) and nitrogen (N), respectively. The presence of deer also reduced the ability of decomposers to break down carbon, but not nitrogen. Indeed, litter placed on an island with deer lost 5% less carbon after 1 yr of decomposition than did litter decomposing on an island without deer. This loss in ability to decompose litter in the presence of deer was outweighed by the differences in mass loss associated with the effect of deer on litter quality. Additional effects of feces deposition by deer on the decomposition process were also significant but minor. These results suggest that the effects dramatic continental-scale increases in deer populations may have on broad-scale patterns of C and N cycling deserve closer attention.

Molecular Ecological Network Analyses: An Effective Conservation Tool for the Assessment of Biodiversity, Trophic Interactions, and Community Structure

Global biodiversity is threatened by the anthropogenic restructuring of animal communities, rewiring species interaction networks in real-time as individuals are extirpated or introduced. Conservation science and adaptive ecosystem management demand more rapid, quantitative, and non-invasive technologies for robustly capturing changing biodiversity and quantifying species interactions. Here we develop molecular ecological network analyses (MENA) as an ecosystem assessment tool to address these needs. To construct the ecological network, we used environmental DNA from feces to identify the plant and mammal diet of two carnivores: puma (Puma concolor) and bobcat (Lynx rufus); two omnivores: coyote (Canis latrans) and gray fox (Urocyon cinereoargenteus); and two herbivores: black-tailed deer (Odocoileus hemionus) and black-tailed jackrabbit (Lepus californicus) in a well-studied Californian reserve. To evaluate MENA as a comprehensive biodiversity tool, we applied our framework to identify the structure of the network, patterns of trophic interactions, key species, and to assess its utility in capturing the biodiversity of the area. The high dietary taxonomic resolution enabled the assessment of species diversity, niche breadth and overlap. The network analysis revealed a dense ecological network with a high diversity of weakly connected species and a community that is highly modular and non-nested. The significant prevalence of tri-trophic chain and exploitative competition patterns indicates (i) the removal or reintroduction of a top predator would trigger a trophic cascade within this community, directly affecting their prey and indirectly the plant communities, and (ii) the potential impact of indirect effects between two predators that consume the same prey. These results suggest that the recent resurgence of puma in the study area may impact the herbaceous and woody vegetation and the population size of other predators. This effect of fluctuating predator populations and plant communities could be predicted through MENA’s fine-scale assessment of the diet selection and the identified keystone species. Although just using a subset of species, MENA more rapidly, accurately, and effectively captured the broader biodiversity of the area in comparison to other methodologies. MENA reconstructed and unveiled the hidden complexity in trophic structure and interaction networks within the community, providing a promising toolkit for biodiversity and ecosystem management.

Failure To Detect Prion Infectivity in Ticks following Prion-Infected Blood Meal.

Chronic wasting disease (CWD) is an emerging and fatal contagious prion disease that affects cervids, including mule deer, white-tailed deer, black-tailed deer, red deer reindeer, elk, and moose. CWD prions are widely distributed throughout the bodies of CWD-infected animals and are found in the nervous system, lymphoid tissues, muscle, blood, urine, feces, and antler velvet. The mechanism of CWD transmission in natural settings is unknown. Potential mechanisms of transmission include horizontal, maternal, or environmental routes. Due to the presence of prions in the blood of CWD-infected animals, the potential exists for invertebrates that feed on mammalian blood to contribute to the transmission of CWD. The geographic range of the Rocky Mountain Wood tick, Dermancentor andersoni, overlaps with CWD throughout the northwest United States and southwest Canada, raising the possibility that D. andersoni parasitization of cervids may be involved in CWD transmission. We investigated this possibility by examining the blood meal of D. andersoni that fed upon prion-infected hamsters for the presence of prion infectivity by animal bioassay. None of the hamsters inoculated with a D. andersoni blood meal that had been ingested from prion-infected hamsters developed clinical signs of prion disease or had evidence for a subclinical prion infection. Overall, the data do not demonstrate a role for D. andersoni in the transmission of prion disease.IMPORTANCE Chronic wasting disease (CWD) is an emerging prion disease that affects cervids, including mule deer, white-tailed deer, black-tailed deer, red deer reindeer, elk, and moose. The mechanism of CWD transmission in unknown. Due to the presence of prions in the blood of CWD-infected animals, it is possible for invertebrates that feed on cervid blood to contribute to the transmission of CWD. We examined the blood meal of D. andersoni, a tick with a similar geographic range as cervids, that fed upon prion-infected hamsters for the presence of prion infectivity by animal bioassay. None of the D. andersoni blood meals that had been ingested from prion-infected hamsters yielded evidence of prion infection. Overall, the data do not support a role of D. andersoni in the transmission of prion disease.

Small mammals and ungulates respond to and interact with revegetation processes following dam removal

Terrestrial wildlife communities are often overlooked as components of ecosystem restoration following dam removal. However, a diverse mammalian fauna colonizes habitat on dewatered reservoirs and may influence restoration processes. We studied mammalian colonization and ungulate herbivory from 2014 to 2018 following the removal of two large dams on the Elwha River in Washington, USA. Specifically, we examined (1) small mammal colonization and (2) Roosevelt elk (Cervus elaphus roosevelti) and Columbian black-tailed deer (Odocoileus hemionus columbianus) distribution and browsing pressure in association with revegetation efforts. We live-trapped small mammals on two former reservoir beds and monitored deer and elk use by conducting pellet group counts and quantifying ungulate herbivory at plots throughout the former reservoir beds and an adjacent reference site. We found that the proportion of deciduous riparian species on plots best predicted occupancy for mice, shrews, and voles. Small mammal species diversity was best explained by the proportion of logs and conifers on study plots. Roosevelt elk presence and browsing intensity on willows (Salix spp.) and black cottonwood (Populus balsamifera ssp. trichocarpa) varied both spatially and temporally, affecting the stature and potentially the growth trajectories of these species. Early seral restoration of these terrestrial habitats has included the presence of a diversity of granivores, insectivores, and herbivores, with elk demonstrating the strongest influence over portions of the study area. Small mammal colonization complements revegetation succession and demonstrates restoration of ecological processes, while large ungulates may be playing a more substantial role in shaping revegetation.

Genetic and evolutionary considerations of the Chronic Wasting Disease – Human species barrier

Transmissible spongiform encephalopathies can jump species barriers. In relatively few cases is the possible route of transmission thought to be known, mostly involving humans, cattle and sheep. It is thought that sheep might be the cause of Bovine Spongiform Encephalopathy (BSE) and Chronic Wasting Disease (CWD) in cervids, and that humans might have gotten prion disease (e.g., vCJD) from eating meat from BSE+ cows. A looming societal question is whether humans will acquire a prion disease from ingesting prions from CWD+ deer. On an evolutionary tree of the PRNP gene in mammals, deer, sheep and cow are relatively closely related, whereas these three species are relatively distant from humans. If a prion disease jumped the species barrier from cow to humans, the phylogenetic gap from deer to humans is no greater, and sheer evolutionary distance alone cannot explain a CWD species barrier in humans. Aspects of the PRNP gene were compared among these species to search for genetic differences that might influence the permeability of the species barrier. Human prion disease has been associated with having more than four copies of the octarepeat unit (PHGGGWG), whereas deer, sheep and cow all have three copies. Two amino acid positions in the metal-binding region (96 and 97) have been implicated in species barriers (Breydo and Uversky, 2011), whereas no variation was detected in white-tailed deer and mule deer with and without CWD, or in black-tailed deer, Key deer or Coues deer. Four out of 10 differences between deer and human in the β2-α2 loop might preclude CWD prions from converting human PrPC to PrPSc because of disruption of a steric zipper. The reasons for a CWD species barrier between deer and humans, if there is one, is still unresolved.

Long-term and interactive effects of different mammalian consumers on growth, survival, and recruitment of dominant tree species.

Throughout the world, numerous tree species are reported to be in decline, either due to increased mortality of established trees or reduced recruitment. The situation appears especially acute for oaks, which are dominant features of many landscapes in the northern hemisphere. Although numerous factors have been hypothesized to explain reductions in tree performance, vertebrate herbivores and granivores may serve as important drivers of these changes. Here, using data from 8‐ and 14‐year‐old exclosure experiments, we evaluated the individual and interactive effects of large and small mammalian herbivores on the performance of three widespread oak species in California—coast live oak (Quercus agrifolia), California black oak (Q. kelloggii), and Oregon white oak (Q. garryana). Although impacts varied somewhat by species and experiment, herbivory by black‐tailed deer (Odocoileus hemionus columbianus) reduced the height and survival of juvenile coast live oaks and altered their architecture, as well as reduced the abundance of black oak seedlings, the richness of woody species and the cover of nonoak woody species. Small mammals (Microtus californicus and Peromyscus maniculatus) had even more widespread effects, reducing the abundance of black oak seedlings and the height and cover of all three oak species. We also detected numerous interactions between small mammals and deer, with one herbivore having positive or negative effects on oak abundance and cover when the other herbivore was either present or absent. For example, deer often had negative effects on seedling abundance only when, or even more so when, small mammals were present. In summary, mammalian consumers play crucial roles in limiting oak recruitment by reducing seedling abundance, maintaining trees in stunted states, and preventing them from reaching sapling stages and becoming reproductive. Interactions between large and small mammals can also alter the intensity and direction of their effects on trees.