Natural and anthropogenic disturbances lead to degradation of (soil organic carbon) SOC content black soil in northeast china. Goethite (α-FeO (OH)) as widely distributed mineral, has a sequestration effect on SOC. With the diversification of crop cultivation in northeast china, various water management are becoming important. However, SOC sequestration mechanism by goethite under varying water management conditions is still unclear. In our study, we set up 3 groups of experiments: 1) 60% water-holding capacity (60% WHC), 60% water-holding capacity with goethite (60% WHCG), 2), waterlogging (W), waterloggin with goethite (WG), 3) alternation of wetting and drying (AWD), alternation of wetting and drying with goethite (AWDG) to elucidate the sequestration mechanism of SOC by goethite under three water management conditions. Results shows introducing goethite can sequester SOC under three water management conditions, with WG SOC sequestration capacity more than AWDG and 60% WHCG. The main sequestration mechanism of SOC has two aspects, on the one hand, goethite introduction increased significantly SOC functional groups, Fe-bound OC, iron molar ratio and Fe-bound OC/SOC, made SOC was bound to goethite by adsorption and co-precipitation. On the other hand, goethite introduction increased the diversity and abundance of bacteria and fungi by affecting soil pH, iron morphology and valence, induced the enrichment of Bryobacter, Gemmatimonas, Conexibacter, Streptomyces, Gaiella, Rubrobacter and Talaromyces potential carbon sequestrating microorganisms, further contributing to SOC sequestration. This study offers a significant theoretical foundation for elucidating the SOC sequestration mechanism of northeastern black soil.